MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 147730 bp
Accession: NZ_CP006947 Location: 2338447..2486176 Organism: Vibrio cholerae O1 str. KW3 Replicon: chromosome
Accession: NZ_CP006947 Location: 2338447..2486176 Organism: Vibrio cholerae O1 str. KW3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N900_RS10655 () | 2334214..2334738 | + | 525 | WP_001226222.1 | inosine/xanthosine triphosphatase | - |
| N900_RS10660 () | 2334816..2335127 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| N900_RS10665 () | 2335182..2337128 | - | 1947 | WP_000197615.1 | murein transglycosylase | - |
| N900_RS10670 () | 2337490..2339157 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| N900_RS10675 () | 2339328..2339699 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| N900_RS10680 () | 2339766..2340893 | - | 1128 | WP_000257629.1 | T-protein | VF |
| N900_RS10685 () | 2340906..2341979 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| N900_RS10690 () | 2342221..2343897 | + | 1677 | WP_000364257.1 | Sensor histidine kinase BtsS | VF |
| N900_RS10695 () | 2343907..2344620 | + | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| N900_RS10700 () | 2344647..2345639 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| N900_RS10705 () | 2345745..2346857 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| N900_RS10710 () | 2346875..2347798 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| N900_RS10715 () | 2347822..2349618 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| N900_RS10720 () | 2349637..2349978 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| N900_RS10725 () | 2350231..2351715 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| N900_RS10730 () | 2351852..2352814 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| N900_RS10735 () | 2352849..2353283 | - | 435 | WP_001068088.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| N900_RS10740 () | 2353446..2353961 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| N900_RS10745 () | 2353977..2356826 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| N900_RS10750 () | 2356857..2357825 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| N900_RS10755 () | 2357894..2359456 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| N900_RS10760 () | 2359714..2359974 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| N900_RS10765 () | 2360043..2360345 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| N900_RS10770 () | 2360568..2361458 | - | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| N900_RS10775 () | 2361853..2363001 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| N900_RS10780 () | 2363094..2363945 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| N900_RS10785 () | 2363955..2364770 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| N900_RS10790 () | 2364799..2365593 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| N900_RS10795 () | 2365603..2367849 | - | 2247 | WP_000952226.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| N900_RS10800 () | 2367852..2368370 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| N900_RS10810 () | 2369001..2369666 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| N900_RS10815 () | 2369883..2370917 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| N900_RS10820 () | 2370955..2371206 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| N900_RS10825 () | 2371784..2373118 | - | 1335 | WP_000107102.1 | Transcriptional regulatory protein ZraR | VF |
| N900_RS10830 () | 2373392..2374924 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| N900_RS10840 () | 2376223..2377536 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| N900_RS10845 () | 2377845..2378567 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| N900_RS10850 () | 2378655..2379926 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| N900_RS10855 () | 2380048..2381637 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| N900_RS10860 () | 2381894..2382541 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| N900_RS10865 () | 2382659..2382910 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| N900_RS10870 () | 2382966..2383835 | + | 870 | WP_001205850.1 | hypothetical protein | - |
| N900_RS10875 () | 2383876..2384484 | + | 609 | WP_001918295.1 | hypothetical protein | - |
| N900_RS10880 () | 2384471..2385019 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| N900_RS10885 () | 2385016..2385315 | + | 300 | WP_000210564.1 | flagellar transcriptional regulator FlhD | - |
| N900_RS10890 () | 2385312..2385845 | + | 534 | WP_000566755.1 | hypothetical protein | - |
| N900_RS10895 () | 2385903..2386334 | + | 432 | WP_000183214.1 | hypothetical protein | - |
| N900_RS10900 () | 2386367..2389936 | - | 3570 | WP_000263683.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| N900_RS10905 () | 2389940..2391328 | - | 1389 | WP_000755289.1 | conjugal transfer protein TraH | - |
| N900_RS10910 () | 2391331..2392275 | - | 945 | WP_001260107.1 | thioredoxin family protein | - |
| N900_RS10915 () | 2392532..2393491 | - | 960 | WP_000198593.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| N900_RS10920 () | 2393779..2394252 | + | 474 | WP_000777554.1 | Dihydrofolate reductase type 1 | ARG |
| N900_RS10925 () | 2394387..2394782 | + | 396 | WP_000096366.1 | hypothetical protein | - |
| N900_RS10930 () | 2394980..2395390 | + | 411 | WP_000592337.1 | helix-turn-helix transcriptional regulator | - |
| N900_RS10935 () | 2395527..2395823 | + | 297 | WP_001919795.1 | DUF1801 domain-containing protein | - |
| N900_RS10940 () | 2395923..2396624 | + | 702 | WP_001901434.1 | helix-turn-helix transcriptional regulator | - |
| N900_RS19285 () | 2396621..2397025 | - | 405 | WP_000023761.1 | VOC family protein | - |
| N900_RS10950 () | 2397297..2398004 | - | 708 | WP_000989526.1 | hypothetical protein | - |
| N900_RS10955 () | 2398094..2399167 | - | 1074 | WP_001207590.1 | toprim domain-containing protein | - |
| N900_RS10960 () | 2399258..2399599 | - | 342 | WP_001081787.1 | hypothetical protein | - |
| N900_RS10965 () | 2399599..2400096 | - | 498 | WP_000797297.1 | DNA repair protein RadC | - |
| N900_RS10970 () | 2400181..2401836 | - | 1656 | WP_001016320.1 | VWA domain-containing protein | - |
| N900_RS10975 () | 2401906..2402346 | - | 441 | WP_001192023.1 | hypothetical protein | - |
| N900_RS10980 () | 2402408..2403361 | - | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| N900_RS10985 () | 2403460..2404227 | - | 768 | WP_000970189.1 | hypothetical protein | - |
| N900_RS10990 () | 2404227..2405186 | - | 960 | WP_000139695.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| N900_RS10995 () | 2405396..2406412 | - | 1017 | WP_000862956.1 | YqaJ viral recombinase family protein | - |
| N900_RS20315 () | 2406473..2406616 | - | 144 | WP_000167277.1 | hypothetical protein | - |
| N900_RS11000 () | 2406698..2407516 | - | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| N900_RS11005 () | 2407596..2408015 | - | 420 | WP_000795985.1 | single-stranded DNA-binding protein | - |
| N900_RS11010 () | 2408031..2408357 | - | 327 | WP_000455723.1 | hypothetical protein | - |
| N900_RS11015 () | 2408725..2409327 | + | 603 | WP_000035785.1 | hypothetical protein | - |
| N900_RS11020 () | 2409436..2410119 | + | 684 | WP_001082313.1 | endonuclease | - |
| N900_RS11025 () | 2410350..2411366 | + | 1017 | WP_001918293.1 | ATP-binding protein | - |
| N900_RS11030 () | 2411474..2412973 | + | 1500 | WP_001920874.1 | IS21 family transposase ISCte8 | Transposase |
| N900_RS11035 () | 2412963..2413718 | + | 756 | WP_000546748.1 | IS21 family transposase ISAlde2 | Transposase |
| N900_RS11040 () | 2413849..2415414 | + | 1566 | WP_001918292.1 | hypothetical protein | - |
| N900_RS11045 () | 2415505..2419197 | - | 3693 | WP_000805082.1 | conjugal transfer protein TraN | - |
| N900_RS11050 () | 2419200..2420228 | - | 1029 | WP_000735886.1 | TraU family protein | - |
| N900_RS11055 () | 2420212..2421336 | - | 1125 | WP_001189235.1 | hypothetical protein | - |
| N900_RS11060 () | 2421347..2421859 | - | 513 | WP_001166558.1 | S26 family signal peptidase | - |
| N900_RS11065 () | 2421843..2422190 | - | 348 | WP_001044650.1 | hypothetical protein | - |
| N900_RS11070 () | 2422183..2424582 | - | 2400 | WP_000648042.1 | type IV secretion system protein TraC | - |
| N900_RS11075 () | 2424582..2425274 | - | 693 | WP_001228926.1 | DsbC family protein | - |
| N900_RS11080 () | 2425406..2426344 | - | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| N900_RS11085 () | 2426337..2427128 | - | 792 | WP_000095578.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| N900_RS11090 () | 2427349..2427735 | - | 387 | WP_000180223.1 | hypothetical protein | - |
| N900_RS11095 () | 2427732..2428304 | - | 573 | WP_001944091.1 | type IV conjugative transfer system lipoprotein TraV | - |
| N900_RS11100 () | 2428379..2429668 | - | 1290 | WP_000647305.1 | TraB/VirB10 family protein | - |
| N900_RS11105 () | 2429671..2430567 | - | 897 | WP_001911237.1 | type-F conjugative transfer system secretin TraK | - |
| N900_RS11110 () | 2430551..2431177 | - | 627 | WP_000667170.1 | hypothetical protein | - |
| N900_RS11115 () | 2431174..2431455 | - | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| N900_RS11125 () | 2431744..2432331 | + | 588 | WP_001167482.1 | hypothetical protein | - |
| N900_RS11130 () | 2432358..2432993 | - | 636 | WP_000033757.1 | DUF4400 domain-containing protein | - |
| N900_RS11135 () | 2432980..2433540 | - | 561 | WP_000546514.1 | hypothetical protein | - |
| N900_RS11140 () | 2433550..2435370 | - | 1821 | WP_000661888.1 | conjugative transfer system coupling protein TraD | - |
| N900_RS11145 () | 2435419..2437569 | - | 2151 | WP_000475916.1 | TraI domain-containing protein | - |
| N900_RS11150 () | 2437691..2438506 | - | 816 | WP_001125250.1 | abortive infection family protein | - |
| N900_RS11155 () | 2438541..2439311 | - | 771 | WP_000158025.1 | hypothetical protein | - |
| N900_RS11160 () | 2439338..2441389 | - | 2052 | WP_000279702.1 | protease Lon-related BREX system protein BrxL | - |
| N900_RS11165 () | 2441428..2443731 | - | 2304 | WP_000567536.1 | PglZ domain-containing protein | - |
| N900_RS11170 () | 2443744..2447484 | - | 3741 | WP_000779609.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| N900_RS11175 () | 2447489..2451178 | - | 3690 | WP_000152592.1 | BREX system P-loop protein BrxC | - |
| N900_RS11180 () | 2451191..2451739 | - | 549 | WP_001115853.1 | hypothetical protein | - |
| N900_RS11185 () | 2451723..2452523 | - | 801 | WP_000653856.1 | DUF1819 family protein | - |
| N900_RS11190 () | 2452541..2453461 | - | 921 | WP_000180270.1 | WYL domain-containing protein | - |
| N900_RS11195 () | 2453779..2454078 | - | 300 | WP_000284114.1 | hypothetical protein | - |
| N900_RS11200 () | 2454166..2455071 | - | 906 | WP_000196209.1 | DNA polymerase III subunit epsilon | - |
| N900_RS11205 () | 2455455..2455712 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| N900_RS11210 () | 2455711..2456160 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| N900_RS11215 () | 2456168..2456401 | + | 234 | Protein_2154 | DNA polymerase V subunit UmuC | - |
| N900_RS11220 () | 2456590..2457090 | + | 501 | Protein_2155 | site-specific integrase | - |
| N900_RS11225 () | 2457151..2458362 | + | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| N900_RS11230 () | 2458463..2459674 | + | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| N900_RS11235 () | 2459711..2461018 | - | 1308 | Protein_2158 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| N900_RS11240 () | 2461490..2462305 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| N900_RS11245 () | 2462366..2463169 | + | 804 | WP_001082316.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| N900_RS11250 () | 2463169..2464005 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| N900_RS11255 () | 2464112..2464516 | - | 405 | Protein_2162 | IS91 family transposase ISPps1 | Transposase |
| N900_RS11260 () | 2464628..2464933 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| N900_RS11265 () | 2464961..2466175 | - | 1215 | WP_000214119.1 | Bicyclomycin resistance protein | ARG |
| N900_RS11270 () | 2466392..2467276 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| N900_RS11275 () | 2467307..2468800 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| N900_RS11285 () | 2469218..2472196 | - | 2979 | WP_000985631.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| N900_RS11290 () | 2472334..2472912 | - | 579 | Protein_2168 | Tn3 family transposase TnpA_IS3000 | Transposase |
| N900_RS11295 () | 2473316..2474359 | + | 1044 | Protein_2169 | translesion error-prone DNA polymerase V subunit UmuC | - |
| N900_RS11300 () | 2474370..2474813 | - | 444 | WP_000348524.1 | hypothetical protein | - |
| N900_RS11305 () | 2475278..2476252 | + | 975 | WP_000497807.1 | ParM/StbA family protein | - |
| N900_RS11310 () | 2476255..2476524 | + | 270 | WP_001995600.1 | hypothetical protein | - |
| N900_RS11315 () | 2476526..2477767 | + | 1242 | WP_001218618.1 | Prophage integrase IntS ; Integrase | Integrase |
| N900_RS11320 () | 2477897..2479915 | - | 2019 | WP_000211147.1 | ATP-binding protein | - |
| N900_RS11325 () | 2480061..2480249 | - | 189 | WP_000127615.1 | hypothetical protein | - |
| N900_RS11330 () | 2480990..2483047 | + | 2058 | WP_000160066.1 | putative signaling protein | VF |
| N900_RS11335 () | 2483036..2483485 | - | 450 | WP_000214238.1 | Ribosomal-protein-alanine acetyltransferase | VF |
| N900_RS11340 () | 2483482..2483889 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| N900_RS11345 () | 2484000..2484503 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| N900_RS11350 () | 2484487..2485014 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| N900_RS11355 () | 2485247..2487301 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| N900_RS11360 () | 2487409..2488422 | + | 1014 | WP_000421327.1 | U32 family peptidase | - |
| N900_RS11365 () | 2488434..2489312 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| N900_RS11370 () | 2489365..2490702 | - | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| N900_RS11375 () | 2490749..2491156 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|