MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 44504 bp
Accession: NZ_CP006929 Location: 2826399..2870902 Organism: Dickeya zeae EC1 Replicon: chromosome
Accession: NZ_CP006929 Location: 2826399..2870902 Organism: Dickeya zeae EC1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| W909_RS12470 () | 2821957..2822613 | - | 657 | WP_020477017.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| W909_RS12475 () | 2823257..2823481 | + | 225 | WP_016940985.1 | DUF2594 family protein | - |
| W909_RS12485 () | 2824189..2825592 | + | 1404 | WP_016940986.1 | D-serine/D-alanine/glycine transporter | - |
| W909_RS12490 () | 2825691..2825954 | - | 264 | Protein_2464 | LysR family transcriptional regulator | - |
| W909_RS12500 () | 2826576..2827859 | + | 1284 | WP_016940987.1 | Prophage integrase IntS ; Integrase | Integrase |
| W909_RS12505 () | 2827929..2828240 | - | 312 | WP_016940988.1 | DUF736 domain-containing protein | - |
| W909_RS12515 () | 2829256..2830182 | + | 927 | WP_016940990.1 | hypothetical protein | - |
| W909_RS12520 () | 2830482..2830748 | - | 267 | WP_016940991.1 | type VI secretion system PAAR protein | - |
| W909_RS12525 () | 2830774..2831796 | - | 1023 | WP_016940992.1 | hypothetical protein | - |
| W909_RS12530 () | 2831811..2833355 | - | 1545 | WP_016940993.1 | hypothetical protein | - |
| W909_RS12535 () | 2833367..2834197 | - | 831 | WP_016940994.1 | DUF4123 domain-containing protein | - |
| W909_RS12540 () | 2834194..2836155 | - | 1962 | WP_016940995.1 | Actin cross-linking toxin VgrG1 | VF |
| W909_RS12545 () | 2836337..2836855 | - | 519 | WP_016940996.1 | Major exported protein | VF |
| W909_RS12550 () | 2837811..2838056 | + | 246 | WP_012769232.1 | helix-turn-helix transcriptional regulator | - |
| W909_RS12555 () | 2838406..2838675 | - | 270 | WP_012884169.1 | helix-turn-helix domain-containing protein | - |
| W909_RS12560 () | 2838809..2839087 | + | 279 | WP_016940997.1 | HTH-type transcriptional regulator Xre | VF |
| W909_RS12565 () | 2839201..2839458 | + | 258 | WP_016940998.1 | helix-turn-helix domain-containing protein | - |
| W909_RS12570 () | 2839954..2840148 | + | 195 | WP_012769228.1 | AlpA family transcriptional regulator | - |
| W909_RS12575 () | 2840165..2840749 | + | 585 | WP_016940999.1 | DUF2857 domain-containing protein | - |
| W909_RS12580 () | 2840739..2840948 | + | 210 | WP_014699379.1 | TraR/DksA family transcriptional regulator | - |
| W909_RS12585 () | 2841296..2842780 | + | 1485 | WP_016941000.1 | AAA family ATPase | - |
| W909_RS12590 () | 2842777..2843664 | + | 888 | WP_020477018.1 | hypothetical protein | - |
| W909_RS12595 () | 2844265..2844501 | + | 237 | WP_029456299.1 | hypothetical protein | - |
| W909_RS12600 () | 2844572..2845219 | + | 648 | WP_029456300.1 | Type IV secretion system protein virB1 | VF |
| W909_RS12605 () | 2845239..2845514 | + | 276 | WP_033581363.1 | hypothetical protein | VF |
| W909_RS12610 () | 2845524..2848271 | + | 2748 | WP_029456301.1 | Type IV secretion system protein virB4 | VF |
| W909_RS12615 () | 2848296..2849012 | + | 717 | WP_016941005.1 | type IV secretion system protein | - |
| W909_RS20275 () | 2849023..2849247 | + | 225 | WP_012769218.1 | EexN family lipoprotein | - |
| W909_RS12620 () | 2849259..2850266 | + | 1008 | Protein_2489 | type IV secretion system protein | - |
| W909_RS20920 () | 2850357..2850497 | + | 141 | WP_016941008.1 | hypothetical protein | - |
| W909_RS12625 () | 2850490..2851173 | + | 684 | WP_016941009.1 | Type IV secretion system protein PtlE | VF |
| W909_RS12630 () | 2851170..2852063 | + | 894 | WP_016941010.1 | P-type conjugative transfer protein VirB9 | - |
| W909_RS12635 () | 2852060..2853268 | + | 1209 | WP_016941011.1 | Type IV secretion system protein virB10 | VF |
| W909_RS12640 () | 2853258..2854274 | + | 1017 | WP_016941012.1 | Type IV secretion system protein VirB11 | VF |
| W909_RS12645 () | 2854315..2854617 | + | 303 | WP_016941013.1 | Killer protein | - |
| W909_RS12655 () | 2855313..2857076 | + | 1764 | WP_080578336.1 | TraM recognition domain-containing protein | - |
| W909_RS12660 () | 2857085..2857831 | + | 747 | WP_016941015.1 | hypothetical protein | - |
| W909_RS12665 () | 2858031..2858783 | + | 753 | WP_016941016.1 | hypothetical protein | - |
| W909_RS12670 () | 2858945..2859730 | - | 786 | WP_029456302.1 | hypothetical protein | - |
| W909_RS12675 () | 2859925..2860275 | - | 351 | Protein_2500 | transposase | - |
| W909_RS12680 () | 2860477..2861376 | + | 900 | WP_016941019.1 | Right origin-binding protein | VF |
| W909_RS12685 () | 2861582..2861896 | - | 315 | WP_016941020.1 | CcdB family protein | Toxin Detail |
| W909_RS12690 () | 2861899..2862135 | - | 237 | WP_016941021.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| W909_RS12695 () | 2862456..2863400 | - | 945 | WP_029456303.1 | DUF1738 domain-containing protein | - |
| W909_RS12700 () | 2863931..2865805 | + | 1875 | WP_016941023.1 | KAP family P-loop domain protein | - |
| W909_RS12705 () | 2866005..2866607 | + | 603 | WP_202799863.1 | hypothetical protein | - |
| W909_RS12710 () | 2866604..2867890 | + | 1287 | WP_016941025.1 | 7-cyano-7-deazaguanine synthase | - |
| W909_RS12715 () | 2867887..2868627 | + | 741 | WP_016941026.1 | TatD family hydrolase | - |
| W909_RS12720 () | 2868903..2869853 | - | 951 | WP_016941027.1 | reverse transcriptase family protein | - |
| W909_RS12725 () | 2869837..2870139 | - | 303 | WP_029456305.1 | helix-turn-helix domain-containing protein | - |
| W909_RS20925 () | 2870177..2870332 | - | 156 | WP_016941029.1 | hypothetical protein | - |
| W909_RS12730 () | 2871407..2872669 | + | 1263 | WP_029456306.1 | glycosyltransferase | - |
| W909_RS12735 () | 2872901..2874664 | + | 1764 | WP_016941032.1 | gamma-glutamyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|