MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 35937 bp
Accession: NZ_CP006821 Location: 1051752..1087688 Organism: Helicobacter pylori oki112 Replicon: chromosome
Accession: NZ_CP006821 Location: 1051752..1087688 Organism: Helicobacter pylori oki112 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI112_RS04940 () | 1047423..1048886 | + | 1464 | WP_025309890.1 | peptidylprolyl isomerase | - |
| HPOKI112_RS04945 () | 1048886..1050382 | + | 1497 | WP_162471594.1 | cell division protein FtsA | - |
| HPOKI112_RS04950 () | 1050517..1051674 | + | 1158 | WP_025309892.1 | cell division protein FtsZ | - |
| HPOKI112_RS04955 () | 1052039..1052932 | - | 894 | WP_025276145.1 | hypothetical protein | - |
| HPOKI112_RS04960 () | 1052914..1053446 | - | 533 | Protein_951 | hypothetical protein | - |
| HPOKI112_RS04965 () | 1053611..1054435 | - | 825 | WP_025276146.1 | mechanosensitive ion channel family protein | - |
| HPOKI112_RS08265 () | 1054649..1054772 | - | 124 | Protein_953 | DNA adenine methylase | - |
| HPOKI112_RS04970 () | 1055042..1055328 | - | 287 | Protein_954 | hypothetical protein | - |
| HPOKI112_RS04975 () | 1055379..1055936 | - | 558 | WP_001900775.1 | hypothetical protein | - |
| HPOKI112_RS04985 () | 1056623..1057696 | + | 1074 | WP_025276147.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HPOKI112_RS04990 () | 1057776..1058459 | - | 684 | WP_025276148.1 | hypothetical protein | - |
| HPOKI112_RS04995 () | 1058531..1059793 | - | 1263 | WP_025309894.1 | P-type conjugative transfer protein TrbL | - |
| HPOKI112_RS08355 () | 1059933..1060073 | - | 141 | WP_162966674.1 | hypothetical protein | - |
| HPOKI112_RS05005 () | 1060125..1061523 | - | 1399 | Protein_960 | hypothetical protein | - |
| HPOKI112_RS05010 () | 1061527..1063710 | - | 2184 | WP_025309895.1 | hypothetical protein | - |
| HPOKI112_RS05015 () | 1063749..1065146 | - | 1398 | WP_025276151.1 | hypothetical protein | - |
| HPOKI112_RS05020 () | 1065153..1066166 | - | 1014 | WP_025276152.1 | DUF1738 domain-containing protein | - |
| HPOKI112_RS08360 () | 1066159..1066305 | - | 147 | WP_162966675.1 | hypothetical protein | - |
| HPOKI112_RS05025 () | 1066469..1073107 | + | 6639 | Protein_965 | DEAD/DEAH box helicase family protein | - |
| HPOKI112_RS05030 () | 1073184..1073402 | + | 219 | WP_000906664.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| HPOKI112_RS05035 () | 1073395..1073589 | + | 195 | WP_001114660.1 | type II toxin-antitoxin system HicA family toxin | - |
| HPOKI112_RS05040 () | 1073586..1074224 | + | 639 | WP_025276154.1 | IS607 family transposase ISCbo10 | Transposase |
| HPOKI112_RS05045 () | 1074211..1075440 | + | 1230 | WP_025309897.1 | IS607 family transposase ISTvo1 | Transposase |
| HPOKI112_RS08105 () | 1075512..1077287 | + | 1776 | Protein_970 | helicase | - |
| HPOKI112_RS05060 () | 1077554..1078210 | + | 657 | WP_025276156.1 | ParA family protein | - |
| HPOKI112_RS05065 () | 1078292..1078576 | + | 285 | WP_000394639.1 | hypothetical protein ; Integrase | Integrase |
| HPOKI112_RS05070 () | 1078608..1079792 | + | 1185 | WP_025276157.1 | hypothetical protein | - |
| HPOKI112_RS05075 () | 1079817..1081704 | - | 1888 | Protein_974 | relaxase/mobilization nuclease domain-containing protein | - |
| HPOKI112_RS05080 () | 1081963..1082277 | + | 315 | WP_025276158.1 | hypothetical protein | Antitoxin Detail |
| HPOKI112_RS05085 () | 1082270..1082551 | + | 282 | WP_015086299.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HPOKI112_RS05090 () | 1082822..1084549 | - | 1728 | WP_025276159.1 | hypothetical protein | VF |
| HPOKI112_RS05095 () | 1084550..1085107 | - | 558 | WP_025277016.1 | hypothetical protein | - |
| HPOKI112_RS05100 () | 1085108..1085398 | - | 291 | WP_000159826.1 | hypothetical protein | - |
| HPOKI112_RS05105 () | 1085395..1085850 | - | 456 | WP_025276161.1 | hypothetical protein | - |
| HPOKI112_RS05110 () | 1085911..1086786 | - | 876 | WP_025309898.1 | hypothetical protein | VF |
| HPOKI112_RS05115 () | 1086786..1087085 | - | 300 | WP_025309899.1 | hypothetical protein | - |
| HPOKI112_RS05120 () | 1087082..1087345 | - | 264 | WP_025276164.1 | hypothetical protein | - |
| HPOKI112_RS05125 () | 1087338..1087631 | - | 294 | WP_025276165.1 | hypothetical protein | - |
| HPOKI112_RS05130 () | 1087701..1088966 | - | 1266 | WP_025309900.1 | DNA type IV secretion system protein ComB10 | - |
| HPOKI112_RS05135 () | 1088966..1090483 | - | 1518 | WP_025277017.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| HPOKI112_RS08365 () | 1090483..1091652 | - | 1170 | Protein_987 | virB8 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|