MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 96784 bp
Accession: NZ_CP006820 Location: 1011592..1108375 Organism: Helicobacter pylori oki102 Replicon: chromosome
Accession: NZ_CP006820 Location: 1011592..1108375 Organism: Helicobacter pylori oki102 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI102_RS04725 () | 1007373..1007750 | - | 378 | WP_025276119.1 | RidA family protein | - |
| HPOKI102_RS04750 () | 1008657..1010147 | + | 1491 | WP_025276120.1 | Na+/H+ antiporter NhaC family protein | - |
| HPOKI102_RS04755 () | 1010462..1010824 | + | 363 | WP_025276121.1 | hypothetical protein | - |
| HPOKI102_RS04765 () | 1011371..1012384 | - | 1014 | WP_025276122.1 | LapA family protein | - |
| HPOKI102_RS04770 () | 1012394..1012846 | - | 453 | WP_001203904.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| HPOKI102_RS04775 () | 1012860..1013729 | - | 870 | WP_000505042.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| HPOKI102_RS04780 () | 1013810..1014424 | + | 615 | WP_025276123.1 | recombination protein RecO | - |
| HPOKI102_RS04785 () | 1014435..1015091 | + | 657 | WP_025276124.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| HPOKI102_RS04790 () | 1015094..1015660 | - | 567 | WP_025276125.1 | hypothetical protein | - |
| HPOKI102_RS04795 () | 1015726..1016358 | - | 633 | WP_025276126.1 | NAD(P)H-dependent oxidoreductase | - |
| HPOKI102_RS04800 () | 1016355..1017209 | - | 855 | WP_025276127.1 | prolipoprotein diacylglyceryl transferase | - |
| HPOKI102_RS04805 () | 1017219..1017947 | - | 729 | WP_025276128.1 | RluA family pseudouridine synthase | - |
| HPOKI102_RS04810 () | 1017959..1019140 | - | 1182 | WP_025276129.1 | 3-deoxy-D-manno-octulosonic acid transferase | VF |
| HPOKI102_RS04815 () | 1019141..1019905 | - | 765 | WP_025276130.1 | zinc ribbon domain-containing protein | - |
| HPOKI102_RS04820 () | 1019915..1020646 | - | 732 | WP_025276131.1 | GTP cyclohydrolase I | - |
| HPOKI102_RS04825 () | 1020648..1021544 | - | 897 | WP_025276132.1 | glycine--tRNA ligase subunit alpha | - |
| HPOKI102_RS04830 () | 1021558..1022496 | - | 939 | WP_000401702.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| HPOKI102_RS04835 () | 1022635..1024530 | - | 1896 | WP_025276133.1 | dynamin family protein | - |
| HPOKI102_RS08095 () | 1024527..1026859 | - | 2333 | Protein_924 | dynamin family protein | - |
| HPOKI102_RS04855 () | 1026861..1028456 | - | 1596 | WP_049818356.1 | dynamin family protein | - |
| HPOKI102_RS04860 () | 1028726..1029013 | - | 288 | WP_025276134.1 | virulence factor | - |
| HPOKI102_RS04865 () | 1029083..1029364 | - | 282 | WP_000880314.1 | DUF3240 family protein | - |
| HPOKI102_RS04870 () | 1029375..1032434 | - | 3060 | WP_025276135.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| HPOKI102_RS04875 () | 1032434..1033507 | - | 1074 | WP_025276136.1 | sodium:proton antiporter | - |
| HPOKI102_RS04880 () | 1033504..1034802 | - | 1299 | WP_025276137.1 | TolC family protein | - |
| HPOKI102_RS04885 () | 1034792..1036897 | - | 2106 | WP_025276138.1 | glycine--tRNA ligase subunit beta | - |
| HPOKI102_RS04890 () | 1037010..1038086 | + | 1077 | WP_025276139.1 | hypothetical protein | - |
| HPOKI102_RS04895 () | 1038099..1039574 | + | 1476 | WP_025276140.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| HPOKI102_RS04900 () | 1039589..1039870 | + | 282 | WP_025276141.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| HPOKI102_RS04905 () | 1039967..1041286 | - | 1320 | WP_025276142.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| HPOKI102_RS04910 () | 1041416..1042879 | + | 1464 | WP_025276143.1 | peptidylprolyl isomerase | - |
| HPOKI102_RS04915 () | 1042895..1044376 | + | 1482 | WP_025276144.1 | cell division protein FtsA | - |
| HPOKI102_RS04920 () | 1044507..1045664 | + | 1158 | WP_000233623.1 | cell division protein FtsZ | - |
| HPOKI102_RS04925 () | 1046022..1046915 | - | 894 | WP_025276145.1 | hypothetical protein | - |
| HPOKI102_RS04930 () | 1046897..1047429 | - | 533 | Protein_940 | hypothetical protein | - |
| HPOKI102_RS04935 () | 1047594..1048418 | - | 825 | WP_025276146.1 | mechanosensitive ion channel family protein | - |
| HPOKI102_RS08275 () | 1048632..1048755 | - | 124 | Protein_942 | DNA adenine methylase | - |
| HPOKI102_RS04940 () | 1049025..1049311 | - | 287 | Protein_943 | hypothetical protein | - |
| HPOKI102_RS04945 () | 1049362..1049919 | - | 558 | WP_001900775.1 | hypothetical protein | - |
| HPOKI102_RS04955 () | 1050619..1051692 | + | 1074 | WP_025276147.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HPOKI102_RS04960 () | 1051772..1052455 | - | 684 | WP_025276148.1 | hypothetical protein | - |
| HPOKI102_RS04965 () | 1052527..1053789 | - | 1263 | WP_025276149.1 | P-type conjugative transfer protein TrbL | - |
| HPOKI102_RS08360 () | 1053929..1054069 | - | 141 | WP_162966674.1 | hypothetical protein | - |
| HPOKI102_RS04975 () | 1054121..1055519 | - | 1399 | Protein_949 | hypothetical protein | - |
| HPOKI102_RS04980 () | 1055523..1057706 | - | 2184 | WP_025276150.1 | hypothetical protein | - |
| HPOKI102_RS04985 () | 1057745..1059142 | - | 1398 | WP_025276151.1 | hypothetical protein | - |
| HPOKI102_RS04990 () | 1059149..1060162 | - | 1014 | WP_025276152.1 | DUF1738 domain-containing protein | - |
| HPOKI102_RS08365 () | 1060155..1060301 | - | 147 | WP_162966675.1 | hypothetical protein | - |
| HPOKI102_RS04995 () | 1060465..1067103 | + | 6639 | Protein_954 | DEAD/DEAH box helicase family protein | - |
| HPOKI102_RS05000 () | 1067180..1067398 | + | 219 | WP_000906664.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| HPOKI102_RS05005 () | 1067391..1067585 | + | 195 | WP_001114660.1 | type II toxin-antitoxin system HicA family toxin | - |
| HPOKI102_RS05010 () | 1067582..1068220 | + | 639 | WP_025276154.1 | IS607 family transposase ISCbo10 | Transposase |
| HPOKI102_RS05015 () | 1068207..1069436 | + | 1230 | WP_025276155.1 | IS607 family transposase ISTvo1 | Transposase |
| HPOKI102_RS08105 () | 1069508..1071283 | + | 1776 | Protein_959 | helicase | - |
| HPOKI102_RS05030 () | 1071550..1072206 | + | 657 | WP_025276156.1 | ParA family protein | - |
| HPOKI102_RS05035 () | 1072288..1072572 | + | 285 | WP_000394639.1 | hypothetical protein ; Integrase | Integrase |
| HPOKI102_RS05040 () | 1072604..1073788 | + | 1185 | WP_025276157.1 | hypothetical protein | - |
| HPOKI102_RS05045 () | 1073813..1075700 | - | 1888 | Protein_963 | relaxase/mobilization nuclease domain-containing protein | - |
| HPOKI102_RS05050 () | 1075959..1076273 | + | 315 | WP_025276158.1 | hypothetical protein | Antitoxin Detail |
| HPOKI102_RS05055 () | 1076266..1076547 | + | 282 | WP_015086299.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HPOKI102_RS05060 () | 1076818..1078545 | - | 1728 | WP_025276159.1 | Protein VirD4 | VF |
| HPOKI102_RS05065 () | 1078546..1079103 | - | 558 | WP_025276160.1 | hypothetical protein | - |
| HPOKI102_RS05070 () | 1079104..1079394 | - | 291 | WP_000159826.1 | hypothetical protein | - |
| HPOKI102_RS05075 () | 1079391..1079846 | - | 456 | WP_025276161.1 | hypothetical protein | - |
| HPOKI102_RS05080 () | 1079843..1080784 | - | 942 | WP_025276162.1 | Type IV secretion system protein VirB11 | VF |
| HPOKI102_RS05085 () | 1080784..1081083 | - | 300 | WP_025276163.1 | hypothetical protein | - |
| HPOKI102_RS05090 () | 1081080..1081343 | - | 264 | WP_025276164.1 | hypothetical protein | - |
| HPOKI102_RS05095 () | 1081336..1081629 | - | 294 | WP_025276165.1 | hypothetical protein | - |
| HPOKI102_RS05100 () | 1081699..1082964 | - | 1266 | WP_025276166.1 | Type IV secretion system protein virB10 | VF |
| HPOKI102_RS05105 () | 1082964..1084481 | - | 1518 | WP_025276167.1 | hypothetical protein | VF |
| HPOKI102_RS08370 () | 1084481..1085650 | - | 1170 | Protein_976 | hypothetical protein | VF |
| HPOKI102_RS05120 () | 1085767..1087800 | - | 2034 | WP_025276168.1 | type IA DNA topoisomerase | - |
| HPOKI102_RS05125 () | 1087803..1090166 | - | 2364 | Protein_978 | hypothetical protein | VF |
| HPOKI102_RS05130 () | 1090213..1090479 | - | 267 | WP_017284177.1 | hypothetical protein | - |
| HPOKI102_RS05135 () | 1090480..1090782 | - | 303 | WP_025276170.1 | hypothetical protein | - |
| HPOKI102_RS05140 () | 1090779..1092302 | - | 1524 | WP_025276171.1 | hypothetical protein | - |
| HPOKI102_RS05145 () | 1092309..1092602 | - | 294 | WP_025276172.1 | hypothetical protein | - |
| HPOKI102_RS05150 () | 1092622..1093401 | - | 780 | WP_025276173.1 | hypothetical protein | - |
| HPOKI102_RS05165 () | 1098246..1098686 | + | 441 | WP_000057808.1 | hypothetical protein | - |
| HPOKI102_RS05170 () | 1098727..1100559 | + | 1833 | WP_025275466.1 | DUF262 domain-containing HNH endonuclease family protein | - |
| HPOKI102_RS05175 () | 1100708..1101631 | + | 924 | WP_025276533.1 | hypothetical protein | - |
| HPOKI102_RS05180 () | 1101784..1102002 | + | 219 | WP_000906664.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| HPOKI102_RS05185 () | 1101995..1102189 | + | 195 | WP_001114660.1 | type II toxin-antitoxin system HicA family toxin | - |
| HPOKI102_RS05190 () | 1102263..1104110 | - | 1848 | WP_025276174.1 | arginine decarboxylase | - |
| HPOKI102_RS05195 () | 1104125..1105294 | - | 1170 | WP_025276175.1 | glycosyltransferase family 4 protein | - |
| HPOKI102_RS05200 () | 1105298..1105726 | - | 429 | WP_001158316.1 | PaaI family thioesterase | - |
| HPOKI102_RS05205 () | 1105741..1106526 | - | 786 | WP_025276176.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| HPOKI102_RS05210 () | 1106530..1107549 | - | 1020 | WP_025276177.1 | hypothetical protein | - |
| HPOKI102_RS05215 () | 1107550..1109502 | - | 1953 | WP_025276178.1 | methionine--tRNA ligase | - |
| HPOKI102_RS05220 () | 1109671..1110840 | + | 1170 | WP_025276179.1 | cyclopropane fatty acid synthase | - |
| HPOKI102_RS05225 () | 1110843..1112714 | - | 1872 | WP_015428076.1 | mechanosensitive ion channel family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|