MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 71522 bp
Accession: NZ_CP006753 Location: 1..71522 Organism: Yersinia pestis 3067 Replicon: plasmid pCD1
Accession: NZ_CP006753 Location: 1..71522 Organism: Yersinia pestis 3067 Replicon: plasmid pCD1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M482_RS00760 () | 271..1530 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| M482_RS00765 () | 1527..1727 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| M482_RS00770 () | 1728..1991 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| M482_RS00775 () | 1993..2340 | + | 348 | WP_011901822.1 | Putative Yop proteins translocation protein G | VF |
| M482_RS00780 () | 2337..2834 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| M482_RS00785 () | 2835..3182 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| M482_RS00790 () | 3189..3923 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| M482_RS00795 () | 3923..4552 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| M482_RS00800 () | 4498..5163 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| M482_RS00805 () | 5388..5735 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| M482_RS23790 () | 6283..7144 | + | 862 | Protein_11 | IS3 family transposase | - |
| M482_RS00825 () | 7268..8290 | + | 1023 | WP_011906282.1 | IS21 family transposase IS100kyp | Transposase |
| M482_RS00830 () | 8290..9069 | + | 780 | WP_001297096.1 | IS21 family transposase IS100kyp | Transposase |
| M482_RS00835 () | 9135..9272 | + | 138 | Protein_14 | transposase | - |
| M482_RS22130 () | 9291..9563 | + | 273 | Protein_15 | transposase | - |
| M482_RS00840 () | 9784..11190 | - | 1407 | WP_011901819.1 | Tyrosine-protein phosphatase YopH | VF |
| M482_RS00845 () | 11473..11706 | - | 234 | Protein_17 | transposase domain-containing protein | - |
| M482_RS00850 () | 11709..12287 | + | 579 | Protein_18 | IS3 family transposase ISYpe1 | Transposase |
| M482_RS00855 () | 12873..13739 | - | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| M482_RS00860 () | 14135..16333 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| M482_RS00865 () | 16351..16779 | - | 429 | WP_002233145.1 | hypothetical protein | VF |
| M482_RS23440 () | 17035..17347 | - | 313 | Protein_22 | IS3 family transposase ISKpn37 | Transposase |
| M482_RS22145 () | 17525..17764 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| M482_RS00875 () | 18937..19815 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| M482_RS00880 () | 19796..19870 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| M482_RS00885 () | 20112..20366 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| M482_RS00890 () | 20504..20752 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| M482_RS22155 () | 20878..21186 | + | 309 | Protein_28 | DDE-type integrase/transposase/recombinase | - |
| M482_RS23800 () | 21169..21576 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| M482_RS00900 () | 21600..21917 | - | 318 | WP_002213008.1 | IS3 family transposase ISKpn37 | Transposase |
| M482_RS00905 () | 22089..22547 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| M482_RS00910 () | 22616..22885 | + | 270 | WP_042469136.1 | transposase | - |
| M482_RS24485 () | 22983..23141 | - | 159 | Protein_33 | EamA family transporter | - |
| M482_RS22165 () | 23211..24514 | - | 1304 | Protein_34 | Adhesin YadA | VF |
| M482_RS00930 () | 25114..25464 | + | 351 | Protein_35 | IS3 family transposase IS1351 | Transposase |
| M482_RS00935 () | 25497..27812 | - | 2316 | WP_011901828.1 | Tn3 family transposase ISEc63 | Transposase |
| M482_RS00940 () | 27976..28527 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| M482_RS00945 () | 28546..29010 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| M482_RS00950 () | 29149..29478 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| M482_RS00960 () | 29578..30677 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| M482_RS00965 () | 30825..31250 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| M482_RS00970 () | 31627..32025 | - | 399 | Protein_42 | IS21 family transposase IS21 | Transposase |
| M482_RS00975 () | 32025..33197 | - | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| M482_RS00980 () | 33300..33944 | + | 645 | Protein_44 | IS3 family transposase ISYen3 | Transposase |
| M482_RS00985 () | 34007..34399 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| M482_RS00990 () | 34593..35252 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| M482_RS00995 () | 35392..35691 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M482_RS01000 () | 35684..35926 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| M482_RS23450 () | 36092..36384 | - | 293 | Protein_49 | IS6 family transposase ISEas1 | Transposase |
| M482_RS24490 () | 36472..36645 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| M482_RS01005 () | 37100..38065 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| M482_RS01010 () | 38062..39228 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| M482_RS23810 () | 39988..41133 | - | 1146 | Protein_53 | IS3 family transposase | - |
| M482_RS01030 () | 41240..41869 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| M482_RS23460 () | 42015..42308 | - | 294 | Protein_55 | IS3 family transposase | - |
| M482_RS01035 () | 42467..43015 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| M482_RS22205 () | 43515..44482 | + | 968 | Protein_57 | Cysteine protease YopT | VF |
| M482_RS01050 () | 44482..44880 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| M482_RS22210 () | 45286..45567 | + | 282 | Protein_59 | DDE-type integrase/transposase/recombinase | - |
| M482_RS01060 () | 45585..46004 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| M482_RS23815 () | 46532..46750 | - | 219 | Protein_61 | IS6 family transposase | - |
| M482_RS23820 () | 46753..46998 | + | 246 | WP_116442925.1 | transposase | - |
| M482_RS01065 () | 46880..47197 | + | 318 | Protein_63 | IS256 family transposase ISSod4 | Transposase |
| M482_RS01070 () | 47240..48469 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| M482_RS01075 () | 48863..49072 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| M482_RS23465 () | 49093..49730 | + | 638 | Protein_66 | IS6 family transposase | - |
| M482_RS01080 () | 49770..50977 | - | 1208 | Protein_67 | IS256 family transposase ISEc39 | Transposase |
| M482_RS01085 () | 51520..52440 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| M482_RS01090 () | 52459..53664 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| M482_RS01095 () | 53642..54148 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| M482_RS01100 () | 54161..55141 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| M482_RS01105 () | 55143..55430 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| M482_RS01110 () | 55472..55912 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| M482_RS01115 () | 55909..58023 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| M482_RS01120 () | 58010..58354 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| M482_RS01125 () | 58351..58719 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| M482_RS01130 () | 58716..59087 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| M482_RS01135 () | 59074..59352 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| M482_RS01140 () | 59333..60214 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| M482_RS01145 () | 60412..61731 | + | 1320 | WP_011901825.1 | putative ATP synthase YscN | VF |
| M482_RS01150 () | 61728..62192 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| M482_RS01155 () | 62192..63559 | + | 1368 | WP_011901824.1 | hypothetical protein | VF |
| M482_RS01160 () | 63556..64479 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| M482_RS01165 () | 64476..65129 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| M482_RS01170 () | 65131..65397 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| M482_RS01175 () | 65394..66179 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| M482_RS01180 () | 66179..67243 | + | 1065 | WP_011901823.1 | Yop proteins translocation protein U | VF |
| M482_RS01185 () | 67818..68213 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| M482_RS01190 () | 68337..69152 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| M482_RS01195 () | 69231..69329 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| M482_RS01200 () | 69555..69968 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|