MGE detailed information
MGE type: Prophage MGE length: 40728 bp
Accession: NZ_CP006569 Location: 2913026..2953753 Organism: Sodalis praecaptivus strain HS1 Replicon: chromosome
Accession: NZ_CP006569 Location: 2913026..2953753 Organism: Sodalis praecaptivus strain HS1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SANT_RS12805 () | 2908201..2908386 | - | 186 | WP_148296285.1 | DUF2158 domain-containing protein | - |
| SANT_RS12810 () | 2908505..2909371 | - | 867 | WP_025422695.1 | SDR family oxidoreductase | - |
| SANT_RS12815 () | 2909848..2910288 | + | 441 | WP_025422696.1 | hypothetical protein | - |
| SANT_RS12820 () | 2910461..2911183 | - | 723 | WP_025422697.1 | phosphohydrolase | - |
| SANT_RS12825 () | 2911893..2912117 | + | 225 | WP_025422698.1 | DUF2188 domain-containing protein | - |
| SANT_RS12830 () | 2912179..2912793 | - | 615 | WP_025422699.1 | alpha/beta fold hydrolase | - |
| SANT_RS12835 () | 2913026..2913937 | - | 912 | WP_025422700.1 | LysR family transcriptional regulator | - |
| SANT_RS12840 () | 2914140..2915318 | + | 1179 | WP_025422701.1 | L,D-transpeptidase family protein | - |
| SANT_RS12845 () | 2915568..2915852 | + | 285 | WP_025422702.1 | hypothetical protein | - |
| SANT_RS12850 () | 2915977..2916930 | - | 954 | WP_025422703.1 | VirK/YbjX family protein | - |
| SANT_RS12855 () | 2917572..2918285 | + | 714 | WP_025422704.1 | PAS and helix-turn-helix domain-containing protein | - |
| SANT_RS24155 () | 2918965..2919546 | - | 582 | WP_148296286.1 | hypothetical protein | - |
| SANT_RS24160 () | 2920042..2920302 | + | 261 | WP_148296287.1 | hypothetical protein | - |
| SANT_RS23375 () | 2921841..2922076 | - | 236 | Protein_2515 | helix-turn-helix domain-containing protein | - |
| SANT_RS12865 () | 2922185..2922436 | + | 252 | WP_025422706.1 | helix-turn-helix domain-containing protein | - |
| SANT_RS12870 () | 2922563..2923465 | + | 903 | WP_025422707.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SANT_RS24500 () | 2923467..2923619 | - | 153 | WP_158500159.1 | hypothetical protein | - |
| SANT_RS12875 () | 2924708..2925019 | + | 312 | WP_025422708.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SANT_RS12880 () | 2925019..2925315 | + | 297 | WP_025422709.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| SANT_RS12885 () | 2925961..2926293 | + | 333 | WP_025422710.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SANT_RS12890 () | 2926319..2926609 | + | 291 | WP_025422711.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| SANT_RS12895 () | 2927144..2927593 | - | 450 | WP_025422712.1 | hypothetical protein | - |
| SANT_RS12900 () | 2927702..2929378 | - | 1677 | WP_025422713.1 | hypothetical protein | - |
| SANT_RS12905 () | 2929375..2929914 | - | 540 | WP_025422714.1 | hypothetical protein | - |
| SANT_RS12910 () | 2929886..2930611 | - | 726 | WP_025422715.1 | hypothetical protein | - |
| SANT_RS12915 () | 2930601..2931032 | - | 432 | WP_025422716.1 | tail fiber assembly protein | - |
| SANT_RS23840 () | 2931035..2933131 | - | 2097 | WP_025422717.1 | phage tail protein | - |
| SANT_RS12925 () | 2933141..2933728 | - | 588 | WP_025422718.1 | hypothetical protein | - |
| SANT_RS12930 () | 2933721..2934905 | - | 1185 | WP_025422719.1 | baseplate J/gp47 family protein | - |
| SANT_RS12935 () | 2934902..2935231 | - | 330 | WP_025422720.1 | DUF2590 family protein | - |
| SANT_RS12940 () | 2935228..2937195 | - | 1968 | WP_025422721.1 | phage tail tape measure protein | - |
| SANT_RS12945 () | 2937192..2937380 | - | 189 | WP_038668558.1 | hypothetical protein | - |
| SANT_RS12950 () | 2937383..2937640 | - | 258 | WP_025422722.1 | putative phage tail assembly chaperone | - |
| SANT_RS12960 () | 2937787..2938119 | - | 333 | WP_025422724.1 | hypothetical protein | - |
| SANT_RS12965 () | 2938119..2938460 | - | 342 | WP_025422725.1 | M15 family metallopeptidase | - |
| SANT_RS12970 () | 2938457..2938753 | - | 297 | WP_025422726.1 | phage holin family protein | - |
| SANT_RS12975 () | 2938763..2939218 | - | 456 | WP_025422727.1 | DUF2597 family protein | - |
| SANT_RS12980 () | 2939215..2940342 | - | 1128 | WP_025422728.1 | DUF2586 family protein | - |
| SANT_RS12985 () | 2940339..2941043 | - | 705 | WP_025422729.1 | phage virion morphogenesis protein | - |
| SANT_RS12990 () | 2941040..2941522 | - | 483 | WP_025422730.1 | phage tail protein | - |
| SANT_RS12995 () | 2941519..2941971 | - | 453 | WP_025422731.1 | head completion/stabilization protein | - |
| SANT_RS13000 () | 2942021..2942758 | - | 738 | WP_025422732.1 | terminase | - |
| SANT_RS13005 () | 2942772..2943800 | - | 1029 | WP_025422733.1 | phage major capsid protein, P2 family | - |
| SANT_RS13010 () | 2943835..2944671 | - | 837 | WP_025422734.1 | GPO family capsid scaffolding protein | - |
| SANT_RS13015 () | 2944814..2946595 | + | 1782 | WP_025422735.1 | terminase family protein | - |
| SANT_RS13020 () | 2946592..2947611 | + | 1020 | WP_038668562.1 | phage portal protein | - |
| SANT_RS23390 () | 2947665..2947940 | + | 276 | WP_200867300.1 | ogr/Delta-like zinc finger family protein | - |
| SANT_RS13025 () | 2947975..2950632 | - | 2658 | WP_025422737.1 | toprim domain-containing protein | - |
| SANT_RS13030 () | 2951279..2951641 | + | 363 | WP_025422738.1 | helix-turn-helix domain-containing protein | - |
| SANT_RS13035 () | 2951650..2952651 | + | 1002 | WP_025422739.1 | tyrosine-type recombinase/integrase | - |
| SANT_RS13055 () | 2954241..2954789 | - | 549 | WP_025422740.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| SANT_RS13060 () | 2954848..2956680 | - | 1833 | WP_025422741.1 | excinuclease ABC subunit UvrC | - |
| SANT_RS13065 () | 2956673..2957329 | - | 657 | WP_011411001.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| SANT_RS13070 () | 2957988..2958212 | + | 225 | WP_025245199.1 | DUF2594 family protein | - |
| SANT_RS13075 () | 2958335..2958679 | + | 345 | WP_025422742.1 | GlpM family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|