MGE detailed information
MGE type: Mobilizable plasmid MGE length: 64561 bp
Accession: NZ_CP006029 Location: 1..64561 Organism: Escherichia coli O145:H28 str. RM13514 Replicon: plasmid pRM13514
Accession: NZ_CP006029 Location: 1..64561 Organism: Escherichia coli O145:H28 str. RM13514 Replicon: plasmid pRM13514
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECRM13514_RS29040 () | 590..1573 | + | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| ECRM13514_RS29045 () | 1590..1883 | + | 294 | WP_000919078.1 | hypothetical protein | - |
| ECRM13514_RS29050 () | 1885..2304 | + | 420 | WP_000651490.1 | H-NS histone family protein | - |
| ECRM13514_RS29055 () | 2364..2915 | - | 552 | WP_001020646.1 | hypothetical protein | - |
| ECRM13514_RS29060 () | 2912..3151 | - | 240 | Protein_5 | transcriptional regulator | - |
| ECRM13514_RS29070 () | 3208..4420 | + | 1213 | WP_200870528.1 | IS3 family transposase | - |
| ECRM13514_RS29075 () | 4464..4832 | - | 369 | Protein_7 | transcriptional regulator | - |
| ECRM13514_RS29080 () | 4843..5376 | - | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| ECRM13514_RS29085 () | 5376..5648 | - | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| ECRM13514_RS29090 () | 6364..6726 | + | 363 | WP_000683483.1 | hypothetical protein | - |
| ECRM13514_RS29095 () | 6764..10378 | - | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| ECRM13514_RS29100 () | 10391..11824 | - | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| ECRM13514_RS29105 () | 11826..12638 | - | 813 | Protein_13 | conjugal transfer protein TraF | - |
| ECRM13514_RS29120 () | 13947..14180 | - | 234 | Protein_15 | conjugal transfer protein TraF | - |
| ECRM13514_RS29125 () | 14291..15802 | - | 1512 | WP_000811656.1 | ATP-dependent helicase | - |
| ECRM13514_RS29135 () | 16089..17129 | - | 1041 | WP_000101568.1 | DNA-binding protein | - |
| ECRM13514_RS29140 () | 17291..18166 | - | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| ECRM13514_RS29150 () | 18523..19014 | - | 492 | WP_000139717.1 | hypothetical protein | - |
| ECRM13514_RS29155 () | 19011..19880 | - | 870 | WP_012728230.1 | 3'-5' exonuclease | - |
| ECRM13514_RS29160 () | 19885..20895 | - | 1011 | WP_000543934.1 | tyrosine-type recombinase/integrase | - |
| ECRM13514_RS29165 () | 20898..21434 | - | 537 | WP_000949433.1 | hypothetical protein | - |
| ECRM13514_RS29175 () | 21733..22014 | - | 282 | WP_000575657.1 | hypothetical protein | - |
| ECRM13514_RS29180 () | 22276..22548 | + | 273 | Protein_24 | hypothetical protein | - |
| ECRM13514_RS29185 () | 22612..23316 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| ECRM13514_RS29190 () | 23536..24192 | - | 657 | WP_000268552.1 | hypothetical protein | - |
| ECRM13514_RS29195 () | 24192..25619 | - | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| ECRM13514_RS29200 () | 25623..26123 | - | 501 | WP_000647188.1 | hypothetical protein | - |
| ECRM13514_RS29205 () | 26132..26443 | - | 312 | WP_001447539.1 | hypothetical protein | - |
| ECRM13514_RS29210 () | 26449..26880 | - | 432 | WP_001326170.1 | hypothetical protein | - |
| ECRM13514_RS29215 () | 26948..27622 | - | 675 | WP_000344149.1 | hypothetical protein | - |
| ECRM13514_RS35165 () | 27597..27878 | - | 282 | WP_000044823.1 | hypothetical protein | - |
| ECRM13514_RS29225 () | 27871..28248 | - | 378 | WP_001125904.1 | hypothetical protein | - |
| ECRM13514_RS34780 () | 28575..28718 | + | 144 | WP_000939033.1 | hypothetical protein | - |
| ECRM13514_RS29230 () | 28810..29445 | + | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| ECRM13514_RS29235 () | 29498..29770 | - | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| ECRM13514_RS29240 () | 29819..31000 | - | 1182 | WP_001207227.1 | ParB/RepB/Spo0J family partition protein | - |
| ECRM13514_RS29245 () | 31004..31789 | - | 786 | WP_001151304.1 | ParA family protein | - |
| ECRM13514_RS29250 () | 31963..32274 | - | 312 | WP_000338945.1 | hypothetical protein | - |
| ECRM13514_RS29255 () | 32581..33396 | + | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| ECRM13514_RS29260 () | 33457..34260 | + | 804 | WP_001082319.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | - |
| ECRM13514_RS29265 () | 34260..35096 | + | 837 | WP_000480968.1 | aminoglycoside O-phosphotransferase APH(6)-Id | - |
| ECRM13514_RS29275 () | 35402..35644 | + | 243 | WP_000844627.1 | transposase | - |
| ECRM13514_RS29280 () | 35676..36326 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| ECRM13514_RS29285 () | 36432..37631 | + | 1200 | WP_000804063.1 | tetracycline efflux MFS transporter Tet(A) | - |
| ECRM13514_RS34130 () | 37598..37786 | - | 189 | Protein_46 | IS91 family transposase | - |
| ECRM13514_RS29290 () | 37898..38203 | - | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| ECRM13514_RS29295 () | 38231..39445 | - | 1215 | WP_012728216.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| ECRM13514_RS35170 () | 39662..40108 | - | 447 | Protein_49 | DUF3363 domain-containing protein | - |
| ECRM13514_RS29305 () | 40577..42070 | - | 1494 | WP_001120888.1 | IS91-like element ISVsa3 family transposase | - |
| ECRM13514_RS29310 () | 42281..42505 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| ECRM13514_RS29315 () | 42502..43239 | - | 738 | WP_001366550.1 | recombinase family protein | - |
| ECRM13514_RS34785 () | 43725..43865 | - | 141 | WP_001044210.1 | hypothetical protein | - |
| ECRM13514_RS29325 () | 43871..44575 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| ECRM13514_RS29330 () | 44640..44819 | - | 180 | Protein_55 | helix-turn-helix transcriptional regulator | - |
| ECRM13514_RS29335 () | 45126..45830 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| ECRM13514_RS29340 () | 46045..46542 | - | 498 | WP_000062185.1 | hypothetical protein | - |
| ECRM13514_RS29345 () | 46545..47033 | - | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| ECRM13514_RS29350 () | 47130..47465 | + | 336 | WP_000683476.1 | hypothetical protein | - |
| ECRM13514_RS29355 () | 47480..47950 | - | 471 | WP_001281821.1 | hypothetical protein | - |
| ECRM13514_RS33435 () | 47943..48314 | - | 372 | WP_000516916.1 | hypothetical protein | - |
| ECRM13514_RS33440 () | 48325..48519 | - | 195 | WP_000343597.1 | hypothetical protein | - |
| ECRM13514_RS29375 () | 48860..49408 | - | 549 | WP_001061574.1 | transcriptional regulator | - |
| ECRM13514_RS29380 () | 49571..49921 | + | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ECRM13514_RS29385 () | 49926..50228 | + | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| ECRM13514_RS29390 () | 50255..50548 | - | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| ECRM13514_RS29395 () | 50636..50908 | - | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| ECRM13514_RS29400 () | 50966..51493 | - | 528 | WP_001236377.1 | thermonuclease family protein | - |
| ECRM13514_RS29410 () | 51724..52581 | - | 858 | WP_001167032.1 | hypothetical protein | - |
| ECRM13514_RS29415 () | 52568..52798 | - | 231 | WP_000972663.1 | hypothetical protein | - |
| ECRM13514_RS29420 () | 52798..53316 | - | 519 | WP_000210756.1 | nitrite reductase | - |
| ECRM13514_RS29425 () | 53313..53759 | - | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| ECRM13514_RS29430 () | 53759..54118 | - | 360 | WP_000422768.1 | hypothetical protein | - |
| ECRM13514_RS29435 () | 54175..54603 | - | 429 | WP_000591074.1 | hypothetical protein | - |
| ECRM13514_RS29440 () | 54637..55497 | - | 861 | WP_000139698.1 | DsbA family protein | - |
| ECRM13514_RS29445 () | 55513..56472 | - | 960 | WP_000829616.1 | S49 family peptidase | - |
| ECRM13514_RS29450 () | 56472..57326 | - | 855 | WP_000539392.1 | hypothetical protein | - |
| ECRM13514_RS29455 () | 57331..57624 | - | 294 | WP_001370730.1 | hypothetical protein | - |
| ECRM13514_RS29460 () | 57635..58108 | - | 474 | WP_000057877.1 | hypothetical protein | - |
| ECRM13514_RS29465 () | 58205..58726 | - | 522 | WP_000805800.1 | hypothetical protein | - |
| ECRM13514_RS29470 () | 58729..59250 | - | 522 | WP_000393785.1 | hypothetical protein | - |
| ECRM13514_RS29475 () | 59255..59863 | - | 609 | WP_000849071.1 | hypothetical protein | - |
| ECRM13514_RS29480 () | 60132..61247 | + | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| ECRM13514_RS29485 () | 61265..61699 | + | 435 | WP_000883925.1 | hypothetical protein | - |
| ECRM13514_RS29495 () | 62736..63836 | - | 1101 | WP_000350011.1 | plasmid replication protein | - |
| ECRM13514_RS29500 () | 63821..64108 | - | 288 | WP_000127321.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|