MGE detailed information
MGE type: Prophage MGE length: 19345 bp
Accession: NZ_CP004057 Location: 1614274..1633618 Organism: Shigella flexneri Shi06HN006 isolate Human Replicon: chromosome
Accession: NZ_CP004057 Location: 1614274..1633618 Organism: Shigella flexneri Shi06HN006 isolate Human Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFYV_RS24960 (1609812) | 1609812..1609979 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| SFYV_RS08910 (1610381) | 1610381..1611142 | - | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| SFYV_RS08915 (1611210) | 1611210..1611413 | - | 204 | WP_000543395.1 | two-component system connector SafA | - |
| SFYV_RS08920 (1611661) | 1611661..1613940 | - | 2280 | WP_000726666.1 | acid resistance putative oxidoreductase YdeP | - |
| SFYV_RS08925 (1614274) | 1614274..1615023 | - | 750 | Protein_1617 | hypothetical protein | VF |
| SFYV_RS26205 (1615079) | 1615079..1615776 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| SFYV_RS08940 (1615794) | 1615794..1616672 | + | 879 | Protein_1619 | IS3 family transposase IS600 | Transposase |
| SFYV_RS08945 (1616697) | 1616697..1616876 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| SFYV_RS28915 (1617026) | 1617026..1617187 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| SFYV_RS08950 (1617187) | 1617187..1617372 | - | 186 | Protein_1622 | DUF1737 domain-containing protein | - |
| SFYV_RS08955 (1617632) | 1617632..1617967 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| SFYV_RS28385 (1618248) | 1618248..1618356 | - | 109 | Protein_1624 | DUF3927 family protein | - |
| SFYV_RS08980 (1619277) | 1619277..1620098 | - | 822 | WP_038404345.1 | antitermination protein | - |
| SFYV_RS08985 (1620113) | 1620113..1620469 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SFYV_RS08990 (1620482) | 1620482..1621531 | - | 1050 | WP_038404347.1 | DUF968 domain-containing protein | - |
| SFYV_RS08995 (1621533) | 1621533..1621811 | - | 279 | Protein_1628 | hypothetical protein | - |
| SFYV_RS09000 (1621878) | 1621878..1622129 | - | 252 | WP_000980987.1 | protein Rem | - |
| SFYV_RS09005 (1622347) | 1622347..1622502 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SFYV_RS09010 (1622574) | 1622574..1622861 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SFYV_RS09015 (1622861) | 1622861..1623100 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SFYV_RS26220 (1623125) | 1623125..1623430 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| SFYV_RS26225 (1623427) | 1623427..1624583 | - | 1157 | Protein_1634 | IS3 family transposase IS600 | Transposase |
| SFYV_RS09030 (1624645) | 1624645..1625664 | + | 1020 | Protein_1635 | MHS family MFS transporter YdfJ | - |
| SFYV_RS09035 (1625753) | 1625753..1627213 | + | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| SFYV_RS09040 (1627249) | 1627249..1627452 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SFYV_RS09045 (1627630) | 1627630..1628316 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| SFYV_RS09050 (1628405) | 1628405..1629151 | - | 747 | WP_005050098.1 | PTS system lactose-specific EIIA component | VF |
| SFYV_RS09055 (1629288) | 1629288..1631333 | + | 2046 | WP_005068122.1 | peptidyl-dipeptidase Dcp | - |
| SFYV_RS09060 (1631378) | 1631378..1631896 | - | 519 | WP_001024558.1 | 2-oxo-tetronate isomerase | - |
| SFYV_RS09065 (1632172) | 1632172..1632396 | + | 225 | Protein_1642 | YdeI family stress tolerance OB fold protein | - |
| SFYV_RS26240 (1632462) | 1632462..1633618 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| SFYV_RS29280 (1633763) | 1633763..1633866 | - | 104 | Protein_1644 | protein MgtT | - |
| SFYV_RS09080 (1633866) | 1633866..1633961 | - | 96 | WP_000901367.1 | protein MgtS | - |
| SFYV_RS09085 (1634088) | 1634088..1635206 | - | 1119 | WP_000212732.1 | efflux MFS transporter YdeE | - |
| SFYV_RS29285 (1635264) | 1635264..1635344 | + | 81 | Protein_1647 | hypothetical protein | - |
| SFYV_RS09090 (1635470) | 1635470..1636369 | + | 900 | WP_000087224.1 | O-acetylserine/cysteine exporter | - |
| SFYV_RS09095 (1636400) | 1636400..1636618 | - | 219 | WP_000803661.1 | multiple antibiotic resistance protein MarB | - |
| SFYV_RS09100 (1636650) | 1636650..1637033 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| SFYV_RS09105 (1637053) | 1637053..1637487 | - | 435 | WP_000843419.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| SFYV_RS09110 (1637695) | 1637695..1638360 | + | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|