MGE detailed information
MGE type: Prophage MGE length: 54888 bp
Accession: NZ_CP004057 Location: 1430766..1485653 Organism: Shigella flexneri Shi06HN006 isolate Human Replicon: chromosome
Accession: NZ_CP004057 Location: 1430766..1485653 Organism: Shigella flexneri Shi06HN006 isolate Human Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFYV_RS07770 () | 1426670..1427308 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| SFYV_RS07775 () | 1427326..1427907 | - | 582 | Protein_1408 | alpha/beta hydrolase | - |
| SFYV_RS07780 () | 1428136..1429332 | + | 1197 | WP_038404336.1 | IS110-like element ISSfl4 family transposase | - |
| SFYV_RS07785 () | 1429349..1429708 | - | 360 | Protein_1410 | alpha/beta hydrolase | - |
| SFYV_RS07790 () | 1429708..1430628 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| SFYV_RS07795 () | 1430766..1431200 | + | 435 | Protein_1412 | DegV domain-containing protein | VF |
| SFYV_RS26020 () | 1432505..1432915 | + | 411 | Protein_1414 | YdaU family protein | - |
| SFYV_RS29260 () | 1434681..1434850 | + | 170 | Protein_1416 | hypothetical protein | - |
| SFYV_RS07825 () | 1434996..1435742 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| SFYV_RS07830 () | 1435757..1436179 | + | 423 | WP_001118168.1 | DUF977 family protein | - |
| SFYV_RS07835 () | 1436237..1436593 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| SFYV_RS07840 () | 1436686..1436904 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| SFYV_RS07845 () | 1436906..1437271 | + | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| SFYV_RS07850 () | 1437268..1437933 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| SFYV_RS07855 () | 1437933..1438298 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 1438683..1438741 | - | 59 | - | - | Antitoxin Detail |
| SFYV_RS07865 () | 1438753..1438908 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| SFYV_RS07880 () | 1440245..1440844 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| SFYV_RS07885 () | 1440844..1441134 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| SFYV_RS07890 () | 1441131..1441685 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| SFYV_RS07895 () | 1441838..1442011 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| SFYV_RS26030 () | 1442073..1443232 | + | 1160 | WP_094106032.1 | IS3 family transposase IS600 | Transposase |
| SFYV_RS07910 () | 1443260..1443628 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| SFYV_RS07915 () | 1443652..1444196 | + | 545 | Protein_1432 | tail fiber assembly protein | - |
| SFYV_RS07920 () | 1444220..1445488 | + | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| SFYV_RS07925 () | 1445439..1446062 | + | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| SFYV_RS07930 () | 1446263..1447120 | - | 858 | WP_000968134.1 | hypothetical protein | ARG |
| SFYV_RS07935 () | 1447117..1447974 | - | 858 | WP_001101728.1 | Central glycolytic genes regulator | ARG |
| SFYV_RS07940 () | 1447971..1448798 | - | 828 | WP_000983722.1 | Glyceraldehyde-3-phosphate dehydrogenase 1 | VF |
| SFYV_RS07945 () | 1448798..1449712 | - | 915 | WP_000555620.1 | Phosphoglycerate kinase | VF |
| SFYV_RS26040 () | 1450144..1450785 | - | 642 | Protein_1439 | Triosephosphate isomerase ; Integrase | Integrase |
| SFYV_RS07960 () | 1450839..1451536 | + | 698 | WP_227804319.1 | IS1 family transposase IS1X2 | Transposase |
| SFYV_RS26045 () | 1451553..1451723 | - | 171 | Protein_1441 | DUF3596 domain-containing protein | - |
| SFYV_RS07965 () | 1451725..1451892 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| SFYV_RS26050 () | 1451940..1453149 | - | 1210 | Protein_1443 | IS3 family transposase IS629 | Transposase |
| SFYV_RS07985 () | 1453224..1454321 | - | 1098 | WP_001173294.1 | AAA family ATPase | - |
| SFYV_RS07990 () | 1454327..1454587 | - | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| SFYV_RS26055 () | 1454686..1455842 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| SFYV_RS08005 () | 1455899..1457314 | - | 1416 | Protein_1447 | exodeoxyribonuclease VIII | - |
| SFYV_RS08010 () | 1457414..1457689 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| SFYV_RS08015 () | 1457764..1457934 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| SFYV_RS08020 () | 1457934..1458155 | - | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| SFYV_RS08035 () | 1459502..1460390 | - | 889 | Protein_1452 | Rha family transcriptional regulator | - |
| SFYV_RS28875 () | 1461614..1461994 | + | 381 | Protein_1453 | IS66 family transposase ISSfl3 | Transposase |
| SFYV_RS28880 () | 1461996..1462164 | + | 169 | Protein_1454 | IS66 family transposase ISSfl3 | Transposase |
| SFYV_RS08050 () | 1462121..1462738 | + | 618 | WP_038404412.1 | IS66 family transposase ISSfl3 | Transposase |
| SFYV_RS08060 () | 1462918..1464633 | - | 1716 | WP_075320563.1 | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase | VF |
| SFYV_RS26070 () | 1465175..1465872 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| SFYV_RS08075 () | 1466152..1466598 | + | 447 | Protein_1458 | metallophosphoesterase | - |
| SFYV_RS26075 () | 1466663..1467819 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| SFYV_RS08090 () | 1467863..1468051 | + | 189 | Protein_1460 | serine/threonine-protein phosphatase | - |
| SFYV_RS08095 () | 1468076..1468267 | - | 192 | WP_005049838.1 | YebW family protein | - |
| SFYV_RS08100 () | 1468372..1468608 | - | 237 | WP_001295499.1 | YebV family protein | - |
| SFYV_RS08105 () | 1468726..1470165 | - | 1440 | Protein_1463 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SFYV_RS08110 () | 1470245..1472865 | - | 2621 | Protein_1464 | hypothetical protein | VF |
| SFYV_RS08115 () | 1472834..1474117 | - | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| SFYV_RS08120 () | 1474247..1474744 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| SFYV_RS08125 () | 1474841..1475539 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| SFYV_RS08130 () | 1475559..1477607 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| SFYV_RS08135 () | 1477799..1478680 | + | 882 | WP_000984517.1 | protease HtpX | - |
| SFYV_RS08140 () | 1478726..1480099 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| SFYV_RS08145 () | 1480276..1481067 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| SFYV_RS08150 () | 1481210..1481449 | - | 240 | WP_001211010.1 | YobH family protein | - |
| SFYV_RS08155 () | 1481608..1481751 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| SFYV_RS08160 () | 1481826..1482113 | + | 288 | WP_001006860.1 | YebO family protein | - |
| SFYV_RS08170 () | 1482784..1482927 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| SFYV_RS08175 () | 1482940..1483149 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| SFYV_RS08180 () | 1483315..1484124 | + | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| SFYV_RS08185 () | 1484121..1484687 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| SFYV_RS08205 () | 1485876..1486352 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| SFYV_RS08210 () | 1486407..1487258 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| SFYV_RS08215 () | 1487271..1488071 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| SFYV_RS08220 () | 1488134..1489105 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|