MGE detailed information
MGE type: Prophage MGE length: 58962 bp
Accession: NZ_CP004056 Location: 2050128..2109089 Organism: Shigella flexneri 2003036 isolate Human Replicon: chromosome
Accession: NZ_CP004056 Location: 2050128..2109089 Organism: Shigella flexneri 2003036 isolate Human Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFY_RS11355 () | 2045552..2047246 | - | 1695 | Protein_2061 | cellulose biosynthesis regulator YedQ | - |
| SFY_RS11365 () | 2047417..2047599 | - | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| SFY_RS11370 () | 2047678..2048595 | - | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| SFY_RS11375 () | 2048768..2049688 | + | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| SFY_RS11380 () | 2049677..2050147 | - | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| SFY_RS11385 () | 2050128..2051546 | - | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| SFY_RS11390 () | 2051613..2052153 | - | 541 | Protein_2067 | phosphohydrolase | - |
| SFY_RS11395 () | 2052193..2052450 | - | 258 | WP_032155863.1 | hypothetical protein | - |
| SFY_RS11410 () | 2053664..2054428 | + | 765 | Protein_2070 | porin | - |
| SFY_RS11425 () | 2055759..2055938 | + | 180 | Protein_2072 | porin | - |
| SFY_RS11435 () | 2056566..2057263 | + | 698 | Protein_2073 | IS1 family transposase IS1X2 | Transposase |
| SFY_RS11440 () | 2057309..2058160 | + | 852 | WP_000218218.1 | protein deglycase HchA | - |
| SFY_RS11445 () | 2058268..2059626 | - | 1359 | WP_000826714.1 | two-component system sensor histidine kinase HprS | - |
| SFY_RS11450 () | 2059626..2060297 | - | 672 | WP_001347103.1 | putative transcriptional regulatory protein YedW | VF |
| SFY_RS11455 () | 2060430..2060843 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| SFY_RS11460 () | 2060952..2061956 | + | 1005 | Protein_2078 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| SFY_RS11465 () | 2061957..2062592 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| SFY_RS11470 () | 2062850..2063500 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| SFY_RS11485 () | 2064580..2064849 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| SFY_RS11490 () | 2064906..2065574 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| SFY_RS11495 () | 2065890..2067533 | + | 1644 | WP_038403939.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| SFY_RS11505 () | 2067713..2068192 | - | 480 | Protein_2084 | DUF4376 domain-containing protein | - |
| SFY_RS11510 () | 2068233..2069090 | - | 858 | Protein_2085 | IS3 family transposase IS600 | Transposase |
| SFY_RS11515 () | 2069148..2069845 | + | 698 | Protein_2086 | IS1 family transposase IS1X2 | Transposase |
| SFY_RS24925 () | 2069938..2070420 | - | 483 | WP_000594909.1 | hypothetical protein | - |
| SFY_RS11525 () | 2070488..2072437 | - | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| SFY_RS11530 () | 2072522..2072857 | - | 336 | WP_001251340.1 | phage tail assembly protein | - |
| SFY_RS11535 () | 2072857..2073213 | - | 357 | WP_001062338.1 | phage tail tube protein | - |
| SFY_RS11540 () | 2073213..2074709 | - | 1497 | WP_000155743.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| SFY_RS11545 () | 2074706..2074867 | - | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| SFY_RS11550 () | 2074877..2075218 | - | 342 | Protein_2093 | hypothetical protein | - |
| SFY_RS11565 () | 2076483..2077295 | - | 813 | Protein_2095 | IS66 family transposase ISSfl3 | Transposase |
| SFY_RS11570 () | 2077292..2077642 | - | 351 | WP_005048975.1 | IS66 family transposase ISSfl3 | Transposase |
| SFY_RS11575 () | 2077639..2078313 | - | 675 | WP_001088287.1 | IS66 family transposase ISSfl3 | Transposase |
| SFY_RS11580 () | 2078412..2078627 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| SFY_RS11605 () | 2079428..2080111 | - | 684 | WP_005049343.1 | antiterminator | - |
| SFY_RS11610 () | 2080108..2080473 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SFY_RS11615 () | 2080474..2081532 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| SFY_RS26155 () | 2081534..2081812 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| SFY_RS11625 () | 2081980..2082192 | - | 213 | WP_000935258.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 2082147..2082205 | + | 59 | - | - | Antitoxin Detail |
| SFY_RS11635 () | 2082787..2083203 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| SFY_RS11640 () | 2083230..2083370 | + | 141 | Protein_2105 | DUF4224 domain-containing protein | - |
| SFY_RS11645 () | 2083370..2084395 | + | 1026 | WP_000533619.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SFY_RS11655 () | 2084631..2085428 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| SFY_RS11665 () | 2085766..2087028 | + | 1263 | Protein_2108 | Prophage integrase IntA ; Integrase | Integrase |
| SFY_RS11680 () | 2088365..2088868 | + | 504 | WP_005063096.1 | MFS transporter | - |
| SFY_RS27985 () | 2088930..2090066 | + | 1137 | Protein_2111 | IS3 family transposase | - |
| SFY_RS11695 () | 2090101..2090316 | + | 216 | Protein_2112 | IS3 family transposase ISSd1 | Transposase |
| SFY_RS11700 () | 2090418..2091872 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| SFY_RS11705 () | 2092215..2092931 | + | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| SFY_RS28870 () | 2093563..2095190 | - | 1628 | Protein_2115 | toxic metabolite efflux MATE transporter YeeO | - |
| SFY_RS11735 () | 2095308..2096258 | - | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| SFY_RS11740 () | 2096360..2097277 | - | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| SFY_RS11750 () | 2097736..2098671 | - | 936 | WP_000986341.1 | L,D-transpeptidase | - |
| SFY_RS11755 () | 2098733..2099812 | - | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| SFY_RS11760 () | 2099824..2100567 | - | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| SFY_RS11765 () | 2100564..2101073 | - | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| SFY_RS26200 () | 2102484..2103692 | + | 1209 | Protein_2123 | IS3 family transposase | - |
| SFY_RS11795 () | 2104074..2104217 | - | 144 | Protein_2124 | transposase domain-containing protein | - |
| SFY_RS11800 () | 2104271..2104453 | + | 183 | WP_001016348.1 | hypothetical protein | - |
| SFY_RS11805 () | 2104554..2104883 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| SFY_RS26210 () | 2105160..2105787 | + | 628 | Protein_2127 | IS3 family transposase IS629 | Transposase |
| SFY_RS26220 () | 2105830..2106150 | - | 321 | Protein_2128 | DUF4102 domain-containing protein | - |
| SFY_RS11820 () | 2106332..2107756 | + | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| SFY_RS11825 () | 2107799..2108026 | - | 228 | WP_000985273.1 | sulfurtransferase TusA family protein | - |
| SFY_RS11830 () | 2108040..2109098 | - | 1059 | WP_000492293.1 | transport protein YeeE | - |
| SFY_RS11835 () | 2109277..2110635 | - | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| SFY_RS28885 () | 2110625..2110687 | - | 63 | WP_097433929.1 | membrane protein YoeI | - |
| SFY_RS11840 () | 2110848..2111831 | - | 984 | WP_000803326.1 | LysR family transcriptional regulator | - |
| SFY_RS11845 () | 2111877..2112701 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| SFY_RS11850 () | 2112784..2113038 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| SFY_RS11855 () | 2113060..2113757 | - | 698 | Protein_2137 | IS1 family transposase | - |
| SFY_RS11860 () | 2113791..2114063 | - | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|