MGE detailed information
MGE type: Prophage MGE length: 54882 bp
Accession: NZ_CP004056 Location: 1412095..1466976 Organism: Shigella flexneri 2003036 isolate Human Replicon: chromosome
Accession: NZ_CP004056 Location: 1412095..1466976 Organism: Shigella flexneri 2003036 isolate Human Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFY_RS07630 () | 1407981..1408619 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| SFY_RS07635 () | 1408637..1409218 | - | 582 | Protein_1379 | alpha/beta hydrolase | - |
| SFY_RS27750 () | 1409447..1410661 | + | 1215 | Protein_1380 | IS110 family transposase | - |
| SFY_RS07650 () | 1410678..1411037 | - | 360 | Protein_1381 | alpha/beta hydrolase | - |
| SFY_RS07655 () | 1411037..1411957 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| SFY_RS07660 () | 1412095..1412577 | + | 483 | WP_000817713.1 | HTH-type transcriptional regulator PgrR | VF |
| SFY_RS25670 () | 1413834..1414244 | + | 411 | Protein_1385 | YdaU family protein | - |
| SFY_RS29250 () | 1415578..1415832 | + | 255 | Protein_1387 | hypothetical protein | - |
| SFY_RS07690 () | 1416325..1417071 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| SFY_RS07695 () | 1417086..1417508 | + | 423 | WP_001118168.1 | DUF977 family protein | - |
| SFY_RS07700 () | 1417566..1417922 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| SFY_RS07705 () | 1418015..1418233 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| SFY_RS07710 () | 1418235..1418600 | + | 366 | WP_001229297.1 | HNH endonuclease | - |
| SFY_RS07715 () | 1418597..1419262 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| SFY_RS07720 () | 1419262..1419627 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - () | 1420012..1420070 | - | 59 | - | - | Antitoxin Detail |
| SFY_RS07730 () | 1420025..1420237 | + | 213 | WP_000018421.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| SFY_RS07740 () | 1420743..1421440 | - | 698 | Protein_1396 | IS1 family transposase IS1X2 | Transposase |
| SFY_RS07750 () | 1421574..1422173 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| SFY_RS07755 () | 1422173..1422463 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| SFY_RS07760 () | 1422460..1423014 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| SFY_RS27760 () | 1423155..1423340 | + | 186 | WP_005049799.1 | hypothetical protein | - |
| SFY_RS07775 () | 1423402..1424558 | + | 1157 | WP_094081518.1 | IS3 family transposase IS600 | Transposase |
| SFY_RS07780 () | 1424586..1424954 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| SFY_RS07785 () | 1424978..1425522 | + | 545 | Protein_1403 | tail fiber assembly protein | - |
| SFY_RS07790 () | 1425546..1426814 | + | 1269 | WP_038403613.1 | prophage tail fiber N-terminal domain-containing protein | - |
| SFY_RS07795 () | 1426765..1427388 | + | 624 | WP_038403614.1 | DUF4376 domain-containing protein | - |
| SFY_RS07800 () | 1427589..1428446 | - | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| SFY_RS07805 () | 1428443..1429300 | - | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| SFY_RS07810 () | 1429297..1430124 | - | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| SFY_RS07815 () | 1430124..1431038 | - | 915 | WP_000555620.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| SFY_RS25675 () | 1431470..1432075 | - | 606 | WP_000443254.1 | Putative defective protein IntQ ; Integrase | Integrase |
| SFY_RS07830 () | 1432165..1432862 | + | 698 | Protein_1411 | IS1 family transposase IS1X2 | Transposase |
| SFY_RS25680 () | 1432879..1433049 | - | 171 | Protein_1412 | DUF3596 domain-containing protein | - |
| SFY_RS07835 () | 1433051..1433218 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| SFY_RS25690 () | 1433266..1434475 | - | 1210 | Protein_1414 | IS3 family transposase IS629 | Transposase |
| SFY_RS07855 () | 1434550..1435647 | - | 1098 | WP_001173294.1 | AAA family ATPase | - |
| SFY_RS07860 () | 1435653..1435913 | - | 261 | WP_005135630.1 | host-nuclease inhibitor protein Gam | - |
| SFY_RS07870 () | 1436012..1437168 | + | 1157 | WP_086020934.1 | IS3 family transposase ISSd1 | Transposase |
| SFY_RS07875 () | 1437223..1438638 | - | 1416 | Protein_1418 | exodeoxyribonuclease VIII | - |
| SFY_RS07880 () | 1438738..1439013 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| SFY_RS07885 () | 1439088..1439264 | - | 177 | WP_000245528.1 | hypothetical protein | - |
| SFY_RS07890 () | 1439258..1439479 | - | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| SFY_RS07905 () | 1440873..1441713 | - | 841 | Protein_1423 | Rha family transcriptional regulator | - |
| SFY_RS29255 () | 1442937..1443317 | + | 381 | Protein_1424 | IS66 family transposase ISSfl3 | Transposase |
| SFY_RS29260 () | 1443319..1443486 | + | 168 | Protein_1425 | IS66 family transposase ISSfl3 | Transposase |
| SFY_RS07920 () | 1443437..1444061 | + | 625 | Protein_1426 | DUF4376 domain-containing protein | - |
| SFY_RS29480 () | 1444061..1444240 | + | 180 | WP_001039888.1 | hypothetical protein | - |
| SFY_RS07930 () | 1444241..1445955 | - | 1715 | Protein_1428 | E3 ubiquitin-protein ligase ipaH3 | VF |
| SFY_RS07940 () | 1446498..1447195 | + | 698 | Protein_1429 | IS1 family transposase IS1X2 | Transposase |
| SFY_RS07945 () | 1447475..1447921 | + | 447 | Protein_1430 | metallophosphoesterase | - |
| SFY_RS07955 () | 1447986..1449142 | + | 1157 | WP_094081495.1 | IS3 family transposase IS600 | Transposase |
| SFY_RS27780 () | 1449186..1449374 | + | 189 | Protein_1432 | serine/threonine-protein phosphatase | - |
| SFY_RS07965 () | 1449399..1449590 | - | 192 | WP_005049838.1 | YebW family protein | - |
| SFY_RS07970 () | 1449695..1449931 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| SFY_RS07975 () | 1450049..1451488 | - | 1440 | Protein_1435 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SFY_RS07980 () | 1451568..1454188 | - | 2621 | Protein_1436 | hypothetical protein | VF |
| SFY_RS07985 () | 1454157..1455440 | - | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| SFY_RS07990 () | 1455570..1456067 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| SFY_RS07995 () | 1456164..1456862 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| SFY_RS08000 () | 1456882..1458930 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| SFY_RS08005 () | 1459122..1460003 | + | 882 | WP_000984517.1 | protease HtpX | - |
| SFY_RS08010 () | 1460049..1461422 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| SFY_RS08015 () | 1461599..1462390 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| SFY_RS08020 () | 1462533..1462772 | - | 240 | WP_001211010.1 | membrane protein | - |
| SFY_RS08025 () | 1462931..1463074 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| SFY_RS08030 () | 1463149..1463436 | + | 288 | WP_001006860.1 | YebO family protein | - |
| SFY_RS08040 () | 1464107..1464250 | + | 144 | WP_001295496.1 | YobF family protein | - |
| SFY_RS08045 () | 1464263..1464472 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| SFY_RS08050 () | 1464638..1465447 | + | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| SFY_RS08055 () | 1465444..1466010 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| SFY_RS08065 () | 1466473..1467170 | - | 698 | Protein_1451 | IS1 family transposase IS1X2 | Transposase |
| SFY_RS08075 () | 1467204..1467677 | - | 474 | WP_038403637.1 | DUF986 family protein | - |
| SFY_RS08080 () | 1467732..1468583 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| SFY_RS08085 () | 1468596..1469396 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| SFY_RS08090 () | 1469459..1470430 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|