MGE detailed information

MGE type: Prophage        MGE length: 125898 bp
Accession: NZ_AP027212        Location: 1267873..1393770         Organism: Escherichia coli strain JNE131328       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QUE42_RS06070 (1263780) 1263780..1264979 + 1200 WP_000284714.1 lipoprotein-releasing ABC transporter permease subunit LolC -
QUE42_RS06075 (1264972) 1264972..1265673 + 702 WP_001033695.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
QUE42_RS06080 (1265673) 1265673..1266917 + 1245 WP_001251389.1 lipoprotein-releasing ABC transporter permease subunit LolE -
QUE42_RS06085 (1266946) 1266946..1267857 + 912 WP_000291270.1 N-acetylglucosamine kinase -
QUE42_RS06090 (1267873) 1267873..1268694 + 822 WP_000952736.1 NAD-dependent protein deacylase -
QUE42_RS06095 (1268833) 1268833..1269621 - 789 WP_000713472.1 TPM domain-containing protein -
QUE42_RS06100 (1269618) 1269618..1270079 - 462 WP_001341497.1 DUF3592 domain-containing protein -
QUE42_RS06105 (1270137) 1270137..1271183 - 1047 WP_000759317.1 spermidine/putrescine ABC transporter substrate-binding protein PotD -
QUE42_RS06110 (1271180) 1271180..1271974 - 795 WP_000580316.1 spermidine/putrescine ABC transporter permease PotC -
QUE42_RS06115 (1272141) 1272141..1273259 - 1119 WP_000074972.1 hypothetical protein ; Integrase Integrase
QUE42_RS06120 (1273228) 1273228..1273497 - 270 WP_000003742.1 excisionase -
QUE42_RS06125 (1273559) 1273559..1276003 - 2445 WP_032284903.1 exonuclease -
QUE42_RS06130 (1276096) 1276096..1276284 - 189 WP_000092784.1 DUF1482 family protein -
QUE42_RS06135 (1276281) 1276281..1276469 - 189 WP_000450222.1 cell division inhibition protein DicB -
QUE42_RS06140 (1276998) 1276998..1277513 + 516 WP_000559920.1 hypothetical protein -
QUE42_RS06145 (1277627) 1277627..1277779 - 153 WP_000367379.1 DUF1391 family protein -
QUE42_RS06150 (1278070) 1278070..1278348 - 279 WP_001303511.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
QUE42_RS06155 (1278350) 1278350..1278541 - 192 WP_001302048.1 hypothetical protein Antitoxin Detail
QUE42_RS06160 (1278562) 1278562..1278933 - 372 WP_001169685.1 hypothetical protein -
QUE42_RS06165 (1279030) 1279030..1279332 + 303 WP_032279888.1 transcriptional regulator -
QUE42_RS06170 (1279329) 1279329..1279754 + 426 WP_000693925.1 toxin YdaT family protein -
QUE42_RS06175 (1279823) 1279823..1280860 + 1038 WP_032284491.1 DnaT-like ssDNA-binding domain-containing protein -
QUE42_RS06180 (1280853) 1280853..1281314 + 462 WP_000139468.1 replication protein P -
QUE42_RS06185 (1281348) 1281348..1282064 + 717 WP_028985606.1 DUF1627 domain-containing protein -
QUE42_RS06190 (1282097) 1282097..1282378 + 282 WP_072094476.1 DNA-binding protein -
QUE42_RS06195 (1282375) 1282375..1282680 + 306 WP_072094475.1 DUF4406 domain-containing protein -
QUE42_RS06200 (1282828) 1282828..1283010 + 183 WP_001224672.1 hypothetical protein -
QUE42_RS06205 (1283003) 1283003..1283179 + 177 WP_000753060.1 hypothetical protein -
QUE42_RS06210 (1283176) 1283176..1283691 + 516 WP_001289991.1 hypothetical protein -
QUE42_RS06215 (1283982) 1283982..1284137 + 156 WP_000813254.1 type I toxin-antitoxin system toxin HokD -
QUE42_RS06220 (1284382) 1284382..1284741 + 360 WP_001219083.1 helix-turn-helix transcriptional regulator -
QUE42_RS06225 (1284777) 1284777..1285220 + 444 WP_014640513.1 ImmA/IrrE family metallo-endopeptidase -
QUE42_RS06230 (1285653) 1285653..1285931 + 279 WP_024200925.1 hypothetical protein -
QUE42_RS06235 (1285933) 1285933..1286982 + 1050 WP_050868115.1 DUF968 domain-containing protein -
QUE42_RS06240 (1287000) 1287000..1287392 + 393 WP_001204796.1 antiterminator Q family protein -
QUE42_RS06245 (1287459) 1287459..1288076 + 618 WP_001005105.1 hypothetical protein -
QUE42_RS06250 (1288312) 1288312..1288509 + 198 WP_000917741.1 hypothetical protein -
QUE42_RS06255 (1288660) 1288660..1289718 + 1059 WP_000935503.1 site-specific DNA-methyltransferase -
QUE42_RS06275 (1290102) 1290102..1291061 + 960 WP_000649753.1 Shiga toxin subunit A VF
QUE42_RS06280 (1291073) 1291073..1291342 + 270 WP_000738072.1 Shiga toxin subunit B VF
QUE42_RS06285 (1291844) 1291844..1293781 + 1938 WP_286334321.1 DUF1737 domain-containing protein -
QUE42_RS06290 (1293940) 1293940..1294098 + 159 WP_001414183.1 DUF1378 family protein -
QUE42_RS06295 (1294139) 1294139..1294384 + 246 WP_001290230.1 DUF826 domain-containing protein -
QUE42_RS06300 (1294462) 1294462..1294677 + 216 WP_000284506.1 class II holin family protein -
QUE42_RS06305 (1294681) 1294681..1294929 + 249 Protein_1227 DUF1327 domain-containing protein -
QUE42_RS06310 (1295561) 1295561..1295848 + 288 WP_024199769.1 hypothetical protein -
QUE42_RS06315 (1295983) 1295983..1296516 + 534 WP_062876348.1 lysozyme -
QUE42_RS06320 (1296791) 1296791..1297363 + 573 WP_064550266.1 phage antirepressor N-terminal domain-containing protein -
QUE42_RS06325 (1297363) 1297363..1297512 + 150 WP_000443009.1 hypothetical protein -
QUE42_RS06330 (1297515) 1297515..1297952 + 438 WP_032209690.1 lysis protein -
QUE42_RS06335 (1298155) 1298155..1298697 + 543 WP_001109017.1 Rha family transcriptional regulator -
QUE42_RS06340 (1299408) 1299408..1299914 + 507 WP_001405844.1 terminase small subunit -
QUE42_RS06345 (1299886) 1299886..1301814 + 1929 WP_001499025.1 phage terminase large subunit family protein -
QUE42_RS06350 (1301798) 1301798..1302004 + 207 WP_000259002.1 gpW family head-tail joining protein -
QUE42_RS06355 (1302001) 1302001..1303593 + 1593 WP_001398667.1 phage portal protein -
QUE42_RS06360 (1303583) 1303583..1305088 + 1506 Protein_1238 S49 family peptidase -
QUE42_RS06365 (1305124) 1305124..1305471 + 348 WP_000256813.1 head decoration protein -
QUE42_RS06370 (1305529) 1305529..1306557 + 1029 WP_000522633.1 major capsid protein -
QUE42_RS06375 (1306610) 1306610..1306993 + 384 WP_000201497.1 DNA-packaging protein FI -
QUE42_RS06380 (1306986) 1306986..1307339 + 354 WP_001204259.1 head-tail joining protein -
QUE42_RS06385 (1307355) 1307355..1307930 + 576 WP_000974993.1 phage tail protein -
QUE42_RS06390 (1307927) 1307927..1308322 + 396 WP_000683075.1 phage minor tail U family protein -
QUE42_RS06395 (1308330) 1308330..1309079 + 750 WP_033801696.1 phage tail protein -
QUE42_RS06400 (1309099) 1309099..1309530 + 432 WP_000479072.1 phage minor tail protein G -
QUE42_RS06405 (1309557) 1309557..1309970 + 414 WP_000533452.1 phage tail assembly protein T -
QUE42_RS06410 (1309951) 1309951..1312524 + 2574 WP_064565486.1 phage tail tape measure protein -
QUE42_RS06415 (1312521) 1312521..1312850 + 330 WP_000847280.1 phage tail protein -
QUE42_RS06420 (1312850) 1312850..1313548 + 699 WP_001499019.1 phage minor tail protein L -
QUE42_RS06425 (1313559) 1313559..1314302 + 744 WP_064506724.1 C40 family peptidase -
QUE42_RS06430 (1314299) 1314299..1314880 + 582 WP_001089952.1 tail assembly protein -
QUE42_RS06435 (1315790) 1315790..1319476 + 3687 WP_286334322.1 phage tail protein -
QUE42_RS06440 (1319675) 1319675..1319815 + 141 WP_000078853.1 Hok/Gef family protein -
QUE42_RS06445 (1319959) 1319959..1321662 + 1704 WP_286334323.1 ISNCY family transposase KIS Transposase
QUE42_RS06450 (1321672) 1321672..1321884 + 213 WP_000438829.1 hypothetical protein -
QUE42_RS06455 (1321896) 1321896..1322570 + 675 WP_001373129.1 DUF4376 domain-containing protein -
QUE42_RS06460 (1322734) 1322734..1323063 - 330 WP_022581964.1 YkgJ family cysteine cluster protein -
QUE42_RS06465 (1323228) 1323228..1324091 - 864 WP_000799399.1 spermidine/putrescine ABC transporter permease PotB -
QUE42_RS06470 (1324075) 1324075..1325211 - 1137 WP_000531601.1 Spermidine/putrescine import ATP-binding protein PotA VF
QUE42_RS06475 (1325461) 1325461..1326690 + 1230 WP_000359432.1 peptidase T -
QUE42_RS06480 (1326836) 1326836..1327957 - 1122 WP_000456506.1 [50S ribosomal protein L16]-arginine 3-hydroxylase -
QUE42_RS06485 (1328206) 1328206..1329435 + 1230 WP_000085265.1 Prophage integrase IntS ; Integrase Integrase
QUE42_RS06490 (1329810) 1329810..1329998 + 189 WP_000953271.1 AlpA family transcriptional regulator -
QUE42_RS06495 (1330275) 1330275..1330478 - 204 WP_000182306.1 hypothetical protein -
QUE42_RS06500 (1330536) 1330536..1330715 - 180 WP_000103621.1 hypothetical protein -
QUE42_RS06505 (1331221) 1331221..1331400 - 180 WP_000201463.1 YlcI/YnfO family protein -
QUE42_RS06510 (1331593) 1331593..1331931 + 339 Protein_1268 ash family protein -
QUE42_RS06515 (1331962) 1331962..1332156 + 195 WP_028985255.1 host cell division inhibitor Icd-like protein -
QUE42_RS06520 (1332143) 1332143..1332343 + 201 WP_032279725.1 hypothetical protein -
QUE42_RS06525 (1332349) 1332349..1332648 + 300 WP_000728896.1 DUF4222 domain-containing protein -
QUE42_RS06530 (1332645) 1332645..1334042 + 1398 WP_000833612.1 helicase RepA family protein -
QUE42_RS06535 (1334245) 1334245..1334496 + 252 WP_024200918.1 hypothetical protein -
QUE42_RS06540 (1334493) 1334493..1334807 + 315 WP_001294163.1 hypothetical protein -
QUE42_RS06545 (1334817) 1334817..1335227 + 411 WP_000126663.1 single-stranded DNA-binding protein -
QUE42_RS06550 (1335238) 1335238..1335486 + 249 WP_000233314.1 PerC family transcriptional regulator -
QUE42_RS06555 (1335627) 1335627..1335851 + 225 WP_001142405.1 hypothetical protein -
QUE42_RS06560 (1336143) 1336143..1337300 + 1158 WP_001137342.1 phage major capsid protein -
QUE42_RS06565 (1337340) 1337340..1337912 + 573 WP_000504057.1 HK97 family phage prohead protease -
QUE42_RS06570 (1337914) 1337914..1339125 + 1212 WP_000267608.1 phage portal protein -
QUE42_RS06575 (1339122) 1339122..1339460 + 339 WP_001020671.1 phage head closure protein -
QUE42_RS06580 (1339457) 1339457..1339753 + 297 WP_000134113.1 head-tail connector protein -
QUE42_RS06585 (1339753) 1339753..1340193 + 441 WP_001145905.1 HNH endonuclease -
QUE42_RS06590 (1340177) 1340177..1340359 + 183 WP_074404611.1 hypothetical protein -
QUE42_RS06595 (1340482) 1340482..1340838 + 357 WP_000113645.1 phage terminase small subunit P27 family -
QUE42_RS06600 (1340822) 1340822..1342483 + 1662 WP_000127881.1 terminase large subunit -
QUE42_RS06605 (1342497) 1342497..1342778 + 282 WP_000133415.1 hypothetical protein -
QUE42_RS06610 (1343628) 1343628..1345088 - 1461 WP_000735412.1 two-component system sensor histidine kinase PhoQ -
QUE42_RS06615 (1345088) 1345088..1345759 - 672 WP_001265481.1 Transcriptional regulatory protein PhoP VF
QUE42_RS06620 (1345927) 1345927..1347297 - 1371 WP_000423729.1 adenylosuccinate lyase -
QUE42_RS06625 (1347301) 1347301..1347942 - 642 WP_001297479.1 high frequency lysogenization protein HflD -
QUE42_RS06630 (1347978) 1347978..1349084 - 1107 WP_001297484.1 tRNA 2-thiouridine(34) synthase MnmA -
QUE42_RS06635 (1349138) 1349138..1349599 - 462 WP_000476089.1 phosphatase NudJ -
QUE42_RS06640 (1349609) 1349609..1350262 - 654 WP_001248691.1 23S rRNA pseudouridine(2457) synthase RluE -
QUE42_RS06645 (1350434) 1350434..1351684 + 1251 WP_000444487.1 NADP-dependent isocitrate dehydrogenase -
QUE42_RS06650 (1352091) 1352091..1354418 - 2328 WP_000885267.1 NB-ARC domain-containing protein -
QUE42_RS06655 (1354737) 1354737..1355864 - 1128 WP_000741318.1 hypothetical protein ; Integrase Integrase
QUE42_RS06660 (1355845) 1355845..1356090 - 246 WP_001527050.1 excisionase -
QUE42_RS06665 (1356145) 1356145..1356681 - 537 WP_000008212.1 HD family hydrolase -
QUE42_RS06670 (1356810) 1356810..1357634 - 825 WP_000081287.1 DUF2303 family protein -
QUE42_RS06675 (1357700) 1357700..1358062 - 363 WP_000135682.1 protein YfdP -
QUE42_RS06680 (1358077) 1358077..1358387 - 311 Protein_1302 hypothetical protein -
QUE42_RS06685 (1358663) 1358663..1358938 - 276 WP_001514782.1 hypothetical protein -
QUE42_RS06690 (1358947) 1358947..1359150 - 204 WP_001369946.1 ClpX C4-type zinc finger protein -
QUE42_RS06695 (1359427) 1359427..1360119 - 693 WP_001369890.1 S24 family peptidase -
QUE42_RS06700 (1360217) 1360217..1360477 + 261 WP_001191674.1 helix-turn-helix transcriptional regulator -
QUE42_RS06705 (1360470) 1360470..1361021 + 552 WP_000515847.1 protein YmfL -
QUE42_RS06710 (1361197) 1361197..1361376 + 180 WP_001250269.1 DUF4222 domain-containing protein -
QUE42_RS06715 (1361366) 1361366..1362307 + 942 WP_264722845.1 helix-turn-helix domain-containing protein -
QUE42_RS06720 (1362304) 1362304..1362798 + 495 WP_074400771.1 PerC family transcriptional regulator -
QUE42_RS06725 (1362798) 1362798..1363451 + 654 WP_001369966.1 phage N-6-adenine-methyltransferase -
QUE42_RS06730 (1363448) 1363448..1363774 + 327 WP_000210187.1 LexA family transcriptional regulator -
QUE42_RS06735 (1363771) 1363771..1364160 + 390 WP_000767113.1 RusA family crossover junction endodeoxyribonuclease -
QUE42_RS06740 (1364180) 1364180..1365022 + 843 WP_001061425.1 KilA-N domain-containing protein -
QUE42_RS06745 (1365030) 1365030..1366019 + 990 WP_033812102.1 DUF968 domain-containing protein -
QUE42_RS06750 (1366037) 1366037..1366384 + 348 WP_001205449.1 antiterminator Q family protein -
QUE42_RS06755 (1366398) 1366398..1367489 - 1092 WP_001198055.1 MBL fold metallo-hydrolase -
QUE42_RS06760 (1367513) 1367513..1368085 - 573 WP_001024069.1 hypothetical protein -
QUE42_RS06765 (1368082) 1368082..1368798 - 717 WP_000143147.1 hypothetical protein -
QUE42_RS06770 (1369174) 1369174..1369500 + 327 WP_001120498.1 phage holin, lambda family -
QUE42_RS06775 (1369504) 1369504..1369980 + 477 WP_001148537.1 glycoside hydrolase family protein -
QUE42_RS06780 (1369964) 1369964..1370356 + 393 WP_001369893.1 DUF2570 domain-containing protein -
QUE42_RS06785 (1370241) 1370241..1370516 + 276 WP_122985440.1 peptidase -
QUE42_RS06790 (1370809) 1370809..1371159 + 351 WP_001140095.1 HNH endonuclease signature motif containing protein -
QUE42_RS06795 (1371286) 1371286..1371780 + 495 WP_000929173.1 phage terminase small subunit P27 family -
QUE42_RS06800 (1371777) 1371777..1373510 + 1734 WP_000088150.1 terminase large subunit -
QUE42_RS06805 (1373522) 1373522..1373704 + 183 WP_000605606.1 protein YmfR -
QUE42_RS06810 (1373704) 1373704..1374945 + 1242 WP_000466253.1 phage portal protein -
QUE42_RS06815 (1374923) 1374923..1375573 + 651 WP_001398562.1 HK97 family phage prohead protease -
QUE42_RS06820 (1375588) 1375588..1376793 + 1206 WP_000257511.1 phage major capsid protein -
QUE42_RS06825 (1376843) 1376843..1377043 + 201 WP_000601360.1 hypothetical protein -
QUE42_RS06830 (1377046) 1377046..1377369 + 324 WP_000927719.1 head-tail connector protein -
QUE42_RS06835 (1377366) 1377366..1377776 + 411 WP_000702388.1 phage head closure protein -
QUE42_RS06840 (1377751) 1377751..1378257 + 507 WP_000213502.1 hypothetical protein -
QUE42_RS06845 (1378254) 1378254..1378814 + 561 WP_000779292.1 hypothetical protein -
QUE42_RS06850 (1378823) 1378823..1378993 + 171 WP_000497751.1 DUF2635 domain-containing protein -
QUE42_RS06855 (1378977) 1378977..1380473 + 1497 WP_000155716.1 phage tail sheath subtilisin-like domain-containing protein -
QUE42_RS06860 (1380473) 1380473..1380829 + 357 WP_000090998.1 phage tail tube protein -
QUE42_RS06865 (1380829) 1380829..1381098 + 270 WP_000811154.1 phage tail assembly protein -
QUE42_RS06870 (1381240) 1381240..1383075 + 1836 WP_000807196.1 phage tail tape measure protein -
QUE42_RS06875 (1383136) 1383136..1384464 + 1329 WP_000219910.1 DNA circularization N-terminal domain-containing protein -
QUE42_RS06880 (1384461) 1384461..1385540 + 1080 WP_000999507.1 hypothetical protein -
QUE42_RS06885 (1385540) 1385540..1386088 + 549 WP_001259081.1 phage baseplate assembly protein V -
QUE42_RS06890 (1386088) 1386088..1386513 + 426 WP_000424732.1 phage GP46 family protein -
QUE42_RS06895 (1386500) 1386500..1387558 + 1059 WP_000785311.1 baseplate J/gp47 family protein -
QUE42_RS06900 (1387549) 1387549..1388133 + 585 WP_000383545.1 YmfQ family protein -
QUE42_RS06905 (1388137) 1388137..1388919 + 783 WP_000554690.1 tail fiber protein -
QUE42_RS06910 (1388919) 1388919..1389521 + 603 WP_001057699.1 tail fiber assembly protein -
QUE42_RS06915 (1389493) 1389493..1389924 - 432 WP_000416463.1 tail fiber assembly protein -
QUE42_RS06920 (1389927) 1389927..1390322 - 396 WP_032193144.1 hypothetical protein -
QUE42_RS06925 (1390352) 1390352..1390906 + 555 WP_000905000.1 Tn3 family transposase TnpR_ISPa38 Transposase
QUE42_RS06930 (1391013) 1391013..1391846 + 834 WP_000557907.1 5-methylcytosine-specific endonuclease McrA -
QUE42_RS06935 (1392077) 1392077..1392244 + 168 Protein_1353 isocitrate/isopropylmalate family dehydrogenase -
QUE42_RS06940 (1392347) 1392347..1392670 - 324 WP_001307134.1 anti-adapter protein IraM -
QUE42_RS06945 (1392923) 1392923..1392967 - 45 WP_120795380.1 protein YmgK -
QUE42_RS06950 (1393203) 1393203..1393313 - 111 WP_032141808.1 hypothetical protein -
QUE42_RS06955 (1393366) 1393366..1393770 - 405 WP_000373101.1 DUF1398 domain-containing protein -
QUE42_RS06960 (1393991) 1393991..1394722 - 732 WP_000332302.1 DNA-binding transcriptional repressor BluR -
QUE42_RS06965 (1394927) 1394927..1396138 - 1212 WP_001297681.1 blue light-responsive regulator BluF -
QUE42_RS06970 (1396452) 1396452..1396688 + 237 WP_000554153.1 regulatory protein YcgZ -
QUE42_RS06975 (1396731) 1396731..1397003 + 273 WP_000858002.1 two-component-system connector protein YmgA -
QUE42_RS06980 (1397032) 1397032..1397298 + 267 WP_000888772.1 biofilm/acid-resistance regulator AriR -
QUE42_RS06985 (1397411) 1397411..1397659 + 249 WP_001065752.1 protein YmgC -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance