MGE detailed information

MGE type: Conjugative plasmid        MGE length: 165449 bp
Accession: NZ_AP026789        Location: 1..165449         Organism: Escherichia coli strain IPCEC42       Replicon: plasmid pIPCEC42_1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OPA56_RS25455 (1509) 1509..1649 + 141 WP_001333237.1 hypothetical protein -
OPA56_RS25460 (1747) 1747..2400 + 654 WP_000616807.1 CPBP family intramembrane metalloprotease -
OPA56_RS25465 (2493) 2493..2750 + 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
OPA56_RS25470 (2683) 2683..3084 + 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
OPA56_RS25475 (3221) 3221..6118 - 2898 WP_001553819.1 Tn3 family transposase TnpA_Tn5403 Transposase
OPA56_RS25480 (6213) 6213..6818 + 606 WP_000509965.1 Tn3 family transposase TnpR_Tn5403 Transposase
OPA56_RS25485 (6842) 6842..7591 - 750 Protein_7 Tn3 family transposase TnpA_TnAs1 Transposase
OPA56_RS25490 (7595) 7595..7987 + 393 WP_001351729.1 isochorismatase family cysteine hydrolase -
OPA56_RS25495 (8125) 8125..9009 + 885 WP_000058717.1 EamA family transporter -
OPA56_RS25500 (9041) 9041..10240 - 1200 WP_000804064.1 Tetracycline resistance protein, class C ARG
OPA56_RS25505 (10346) 10346..10972 + 627 WP_031606906.1 tetracycline resistance transcriptional repressor TetR(A) -
OPA56_RS25510 (11004) 11004..11246 - 243 WP_032140899.1 hypothetical protein -
OPA56_RS25515 (11288) 11288..12802 - 1515 Protein_13 Tn3 family transposase TnpA_TnAs1 Transposase
OPA56_RS25520 (12868) 12868..13572 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OPA56_RS25525 (13625) 13625..14446 - 822 Protein_15 type IV secretion system DNA-binding domain-containing protein -
OPA56_RS25530 (14443) 14443..15222 - 780 WP_000199914.1 hypothetical protein -
OPA56_RS25535 (15425) 15425..16156 - 732 WP_000850429.1 conjugal transfer complement resistance protein TraT -
OPA56_RS25540 (16188) 16188..16685 - 498 WP_000605862.1 entry exclusion protein -
OPA56_RS25545 (16704) 16704..19523 - 2820 WP_001007062.1 conjugal transfer mating-pair stabilization protein TraG -
OPA56_RS25550 (19520) 19520..20893 - 1374 WP_000944328.1 conjugal transfer pilus assembly protein TraH -
OPA56_RS25555 (20880) 20880..21272 - 393 WP_000659962.1 F-type conjugal transfer protein TrbF -
OPA56_RS25560 (21253) 21253..21600 - 348 WP_071571857.1 P-type conjugative transfer protein TrbJ -
OPA56_RS25565 (21530) 21530..22075 - 546 WP_000059829.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
OPA56_RS25570 (22062) 22062..22346 - 285 WP_001617873.1 type-F conjugative transfer system pilin chaperone TraQ -
OPA56_RS25575 (22473) 22473..22793 - 321 WP_001348757.1 conjugal transfer protein TrbA -
OPA56_RS25585 (23693) 23693..24673 - 981 WP_000019450.1 IS5 family transposase ISKpn26 Transposase
OPA56_RS25590 (24803) 24803..25546 - 744 WP_001030401.1 type-F conjugative transfer system pilin assembly protein TraF -
OPA56_RS25595 (25539) 25539..25796 - 258 WP_000864347.1 conjugal transfer protein TrbE -
OPA56_RS25600 (25823) 25823..27673 - 1851 WP_000821866.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
OPA56_RS25605 (27670) 27670..28308 - 639 WP_001080259.1 type-F conjugative transfer system pilin assembly protein TrbC -
OPA56_RS25610 (28317) 28317..28622 - 306 WP_000224413.1 hypothetical protein -
OPA56_RS25615 (28652) 28652..29644 - 993 WP_000830190.1 conjugal transfer pilus assembly protein TraU -
OPA56_RS25620 (29641) 29641..30273 - 633 WP_001203727.1 type-F conjugative transfer system protein TraW -
OPA56_RS25625 (30270) 30270..30656 - 387 WP_000214084.1 type-F conjugative transfer system protein TrbI -
OPA56_RS25630 (30653) 30653..33280 - 2628 WP_001064258.1 type IV secretion system protein TraC -
OPA56_RS25635 (33440) 33440..33661 - 222 WP_001278694.1 conjugal transfer protein TraR -
OPA56_RS25640 (33796) 33796..34311 - 516 WP_000809886.1 type IV conjugative transfer system lipoprotein TraV -
OPA56_RS25645 (34311) 34311..34622 - 312 WP_001057272.1 conjugal transfer protein TrbD -
OPA56_RS25650 (34609) 34609..35175 - 567 WP_000896601.1 conjugal transfer pilus-stabilizing protein TraP -
OPA56_RS25655 (35165) 35165..36616 - 1452 WP_000146687.1 F-type conjugal transfer pilus assembly protein TraB -
OPA56_RS25660 (36616) 36616..37344 - 729 WP_001230808.1 type-F conjugative transfer system secretin TraK -
OPA56_RS25665 (37331) 37331..37897 - 567 WP_000399791.1 type IV conjugative transfer system protein TraE -
OPA56_RS25670 (37919) 37919..38230 - 312 WP_000012107.1 type IV conjugative transfer system protein TraL -
OPA56_RS25675 (38245) 38245..38604 - 360 WP_024210418.1 type IV conjugative transfer system pilin TraA -
OPA56_RS25680 (38638) 38638..38865 - 228 WP_001254388.1 conjugal transfer relaxosome protein TraY -
OPA56_RS25685 (38953) 38953..39630 - 678 WP_001348626.1 PAS domain-containing protein -
OPA56_RS25690 (39764) 39764..40147 - 384 WP_001151566.1 conjugal transfer relaxosome DNA-binding protein TraM -
OPA56_RS25695 (40477) 40477..41079 + 603 WP_000243712.1 hypothetical protein VF
OPA56_RS25700 (41376) 41376..42197 - 822 WP_001234469.1 DUF932 domain-containing protein -
OPA56_RS25705 (42316) 42316..42603 - 288 WP_000107535.1 hypothetical protein -
OPA56_RS25710 (42628) 42628..42834 - 207 WP_000275859.1 hypothetical protein -
OPA56_RS25715 (42904) 42904..43077 + 174 Protein_53 hypothetical protein -
OPA56_RS25720 (43075) 43075..43305 - 231 WP_001426396.1 hypothetical protein -
OPA56_RS25725 (43525) 43525..43650 - 126 WP_001372321.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
OPA56_RS25730 (43592) 43592..43741 - 150 Protein_56 plasmid maintenance protein Mok -
- (43727) 43727..43854 - 128 NuclAT_0 - Antitoxin Detail
- (43727) 43727..43854 - 128 NuclAT_0 - Antitoxin Detail
- (43727) 43727..43854 - 128 NuclAT_0 - Antitoxin Detail
- (43727) 43727..43854 - 128 NuclAT_0 - Antitoxin Detail
- (45296) 45296..45398 - 103 NuclAT_1 - -
- (45296) 45296..45398 - 103 NuclAT_1 - -
- (45296) 45296..45398 - 103 NuclAT_1 - -
- (45296) 45296..45398 - 103 NuclAT_1 - -
OPA56_RS25740 (45367) 45367..46129 - 763 Protein_58 plasmid SOS inhibition protein A -
OPA56_RS25745 (46126) 46126..46560 - 435 WP_000845949.1 conjugation system SOS inhibitor PsiB -
OPA56_RS25750 (46615) 46615..48573 - 1959 WP_042045562.1 ParB/RepB/Spo0J family partition protein -
OPA56_RS25755 (48639) 48639..48872 - 234 WP_000005990.1 DUF905 family protein -
OPA56_RS25760 (48935) 48935..49432 - 498 WP_042045560.1 single-stranded DNA-binding protein -
OPA56_RS25765 (49582) 49582..51483 - 1902 WP_000936285.1 group II intron reverse transcriptase/maturase -
OPA56_RS25770 (52161) 52161..52367 - 207 WP_000547975.1 hypothetical protein -
OPA56_RS25775 (52280) 52280..52615 - 336 WP_013023876.1 hypothetical protein -
OPA56_RS25780 (52608) 52608..52859 - 252 WP_071579736.1 hypothetical protein -
OPA56_RS25785 (52778) 52778..52984 - 207 WP_001774176.1 hypothetical protein -
OPA56_RS25790 (53010) 53010..53573 - 564 WP_001348621.1 class I SAM-dependent methyltransferase -
OPA56_RS25795 (53621) 53621..54982 - 1362 WP_000170714.1 DUF3560 domain-containing protein -
OPA56_RS25800 (55034) 55034..55264 - 231 WP_000218642.1 hypothetical protein -
OPA56_RS25805 (56299) 56299..56490 - 192 WP_001027516.1 hypothetical protein -
OPA56_RS25810 (56487) 56487..56909 - 423 WP_000271753.1 DUF1380 family protein -
OPA56_RS25815 (56956) 56956..57381 - 426 WP_001198928.1 antirestriction protein -
OPA56_RS25820 (57958) 57958..59070 - 1113 WP_001300563.1 IS4 family transposase IS421 Transposase
OPA56_RS25825 (59147) 59147..59923 - 777 WP_171872361.1 hypothetical protein -
OPA56_RS25830 (59974) 59974..60492 - 519 WP_123325260.1 DUF1380 family protein -
OPA56_RS25835 (60422) 60422..60643 - 222 WP_001104873.1 hypothetical protein -
OPA56_RS25840 (60644) 60644..61327 - 684 WP_000086185.1 DNA methylase -
OPA56_RS25845 (61404) 61404..61715 - 312 WP_042045883.1 hypothetical protein -
OPA56_RS25850 (61712) 61712..62614 - 903 WP_077727434.1 DUF1281 domain-containing protein -
OPA56_RS25855 (63481) 63481..64452 - 972 WP_000817036.1 ParB/RepB/Spo0J family plasmid partition protein -
OPA56_RS25860 (64452) 64452..65618 - 1167 WP_000772446.1 Sporulation initiation inhibitor protein Soj VF
OPA56_RS25865 (66206) 66206..66961 - 756 WP_000852146.1 replication initiation protein RepE -
OPA56_RS25870 (67735) 67735..68541 - 807 WP_000016982.1 site-specific integrase -
OPA56_RS25875 (68542) 68542..68847 - 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
OPA56_RS25880 (68849) 68849..69067 - 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA -
OPA56_RS25885 (69647) 69647..70735 + 1089 WP_000952217.1 transcriptional repressor PifC -
OPA56_RS25890 (70737) 70737..72962 + 2226 WP_000698737.1 P-loop NTPase fold protein -
OPA56_RS25895 (73012) 73012..73911 - 900 WP_000963206.1 nucleotide-binding protein -
OPA56_RS25900 (73901) 73901..74191 - 291 WP_000538310.1 hypothetical protein -
OPA56_RS25905 (76307) 76307..76948 + 642 WP_033550835.1 hypothetical protein -
OPA56_RS25910 (77788) 77788..78765 + 978 WP_033550836.1 RepB family plasmid replication initiator protein -
OPA56_RS25915 (79050) 79050..79790 - 741 WP_033550837.1 tyrosine-type recombinase/integrase -
OPA56_RS25920 (79911) 79911..80099 - 189 WP_001309252.1 hypothetical protein -
OPA56_RS25925 (80466) 80466..81332 + 867 WP_264793745.1 hypothetical protein -
OPA56_RS25930 (81223) 81223..81927 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OPA56_RS25935 (81991) 81991..82437 + 447 Protein_97 tunicamycin resistance protein -
OPA56_RS25940 (82919) 82919..83110 - 192 WP_000951934.1 hypothetical protein -
OPA56_RS25945 (83134) 83134..83361 + 228 WP_000248278.1 hypothetical protein -
OPA56_RS25950 (83412) 83412..84548 + 1137 WP_000080860.1 DUF3883 domain-containing protein -
OPA56_RS25955 (84663) 84663..85926 + 1264 Protein_101 IS1182 family transposase ISCfr1 Transposase
OPA56_RS25960 (85991) 85991..86782 + 792 WP_264793744.1 IS6 family transposase IS15DII Transposase
OPA56_RS25965 (86690) 86690..87253 - 564 Protein_103 sulfatase-like hydrolase/transferase -
OPA56_RS25970 (87316) 87316..87822 + 507 Protein_104 transposase family protein -
OPA56_RS25975 (87831) 87831..88691 + 861 WP_000493383.1 EamA family transporter -
OPA56_RS25980 (88723) 88723..89922 - 1200 WP_000804064.1 Tetracycline resistance protein, class C ARG
OPA56_RS25985 (90028) 90028..90654 + 627 WP_031606906.1 tetracycline resistance transcriptional repressor TetR(A) -
OPA56_RS25990 (90686) 90686..90922 - 237 WP_042005022.1 hypothetical protein -
OPA56_RS25995 (90976) 90976..91812 - 837 WP_000480972.1 hypothetical protein ARG
OPA56_RS26000 (91812) 91812..92615 - 804 WP_001082319.1 Aminoglycoside 3'-phosphotransferase ARG
OPA56_RS26005 (92676) 92676..93491 - 816 WP_001043260.1 Dihydropteroate synthase ARG
OPA56_RS26010 (93679) 93679..93975 - 297 Protein_112 replication protein C, IncQ-type -
OPA56_RS26015 (94036) 94036..94740 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OPA56_RS26020 (94862) 94862..95767 + 906 WP_000219391.1 hypothetical protein ARG
OPA56_RS26025 (95764) 95764..97002 + 1239 WP_000004159.1 macrolide resistance MFS transporter Mrx(A) -
OPA56_RS26030 (97002) 97002..97586 + 585 WP_001137892.1 macrolide-binding transcriptional repressor MphR(A) -
OPA56_RS26035 (98079) 98079..98843 - 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
OPA56_RS26040 (98961) 98961..99026 - 66 Protein_118 EAL domain-containing protein -
OPA56_RS26045 (99070) 99070..99375 - 306 WP_000130000.1 hypothetical protein Relaxase
OPA56_RS26050 (99386) 99386..100591 - 1206 WP_000184001.1 chromate efflux transporter -
OPA56_RS26055 (100747) 100747..100950 - 204 WP_000376616.1 hypothetical protein -
OPA56_RS26060 (101078) 101078..101917 - 840 WP_000259031.1 Dihydropteroate synthase ARG
OPA56_RS26065 (101911) 101911..102258 - 348 WP_000679427.1 Multidrug transporter EmrE ARG
OPA56_RS26070 (102464) 102464..103252 - 789 WP_000503573.1 Streptomycin 3''-adenylyltransferase ARG
OPA56_RS26075 (103383) 103383..103856 - 474 WP_001389366.1 trimethoprim-resistant dihydrofolate reductase DfrA17 -
OPA56_RS26080 (104014) 104014..104559 + 546 Protein_126 IS91 family transposase ISAzo26 Transposase
OPA56_RS26085 (104624) 104624..105328 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OPA56_RS26090 (105466) 105466..105636 + 171 Protein_128 DsbA family protein -
OPA56_RS26095 (105626) 105626..106132 + 507 WP_000949452.1 protein disulfide oxidoreductase -
OPA56_RS26100 (106369) 106369..107130 + 762 WP_001225378.1 Na(+)-translocating NADH-quinone reductase subunit C -
OPA56_RS26105 (107477) 107477..109363 + 1887 WP_000118029.1 FTR1 family protein -
OPA56_RS26110 (109404) 109404..109931 + 528 WP_000178050.1 iron transporter -
OPA56_RS26115 (110035) 110035..111414 + 1380 WP_000119836.1 Fe-S-containing protein -
OPA56_RS26120 (111417) 111417..112700 + 1284 WP_000964653.1 ABC transporter permease -
OPA56_RS26125 (112690) 112690..113820 + 1131 WP_000729218.1 ABC transporter permease -
OPA56_RS26130 (113825) 113825..114520 + 696 WP_000117262.1 Lipoprotein-releasing system ATP-binding protein LolD VF
OPA56_RS26135 (114507) 114507..114992 + 486 WP_001267176.1 TlpA disulfide reductase family protein -
OPA56_RS26140 (115017) 115017..115502 + 486 WP_000874189.1 hypothetical protein -
OPA56_RS26145 (115624) 115624..116257 + 634 Protein_139 histidine-type phosphatase -
OPA56_RS26150 (116407) 116407..116580 - 174 Protein_140 IS5 family transposase ISKpn26 Transposase
OPA56_RS26155 (116581) 116581..116895 - 315 Protein_141 IS5 family transposase ISKpn26 Transposase
OPA56_RS26160 (117568) 117568..118307 - 740 Protein_142 IS3 family transposase IS629 Transposase
OPA56_RS26165 (118409) 118409..118669 + 261 WP_000371882.1 hypothetical protein -
OPA56_RS26170 (118666) 118666..119175 + 510 WP_000194542.1 hypothetical protein -
OPA56_RS26175 (119195) 119195..119542 - 348 WP_000142452.1 DUF6404 family protein -
OPA56_RS26180 (119671) 119671..120006 + 336 WP_001080732.1 colicin E1 family microcin immunity protein -
OPA56_RS26185 (121458) 121458..122083 + 626 Protein_147 replication initiation protein -
OPA56_RS26190 (122457) 122457..123332 + 876 WP_001224623.1 ChaN family lipoprotein -
OPA56_RS26195 (123340) 123340..124116 + 777 WP_000981091.1 energy transducer TonB -
OPA56_RS26200 (124285) 124285..126546 + 2262 WP_001100763.1 TonB-dependent receptor -
OPA56_RS26205 (126615) 126615..127790 + 1176 WP_001020413.1 putative protein YncE VF
OPA56_RS26210 (128313) 128313..128618 - 306 Protein_152 IS91 family transposase ISSbo1 Transposase
OPA56_RS26215 (128644) 128644..129383 + 740 Protein_153 IS3 family transposase IS629 Transposase
OPA56_RS26220 (130056) 130056..131564 + 1509 WP_001189113.1 group II intron reverse transcriptase/maturase -
OPA56_RS26225 (131648) 131648..131986 + 339 Protein_155 IS3 family transposase IS629 Transposase
OPA56_RS26230 (132066) 132066..132470 + 405 WP_000839179.1 IS66 family transposase ISEc22 Transposase
OPA56_RS26235 (132467) 132467..132814 + 348 WP_000612626.1 IS66 family transposase ISKpn24 Transposase
OPA56_RS26240 (132863) 132863..133798 + 936 Protein_158 IS66 family transposase ISEc22 Transposase
OPA56_RS26245 (133884) 133884..134906 + 1023 WP_000255956.1 IS21 family transposase IS100kyp Transposase
OPA56_RS26250 (134903) 134903..135685 + 783 WP_001317493.1 IS21 family transposase IS100kyp Transposase
OPA56_RS26255 (135753) 135753..136361 + 609 Protein_161 IS66 family transposase ISEc22 Transposase
OPA56_RS26260 (136424) 136424..137215 - 792 WP_000977394.1 DUF4198 domain-containing protein -
OPA56_RS26265 (137222) 137222..139192 - 1971 WP_001298664.1 Hemin receptor VF
OPA56_RS26270 (139474) 139474..139898 + 425 Protein_164 IS3 family transposase IS2 Transposase
OPA56_RS26275 (140435) 140435..140707 + 273 WP_001322642.1 adhesin biosynthesis transcription regulatory family protein -
OPA56_RS26280 (141153) 141153..141328 + 176 Protein_166 IS3 family transposase -
OPA56_RS26285 (141554) 141554..142042 - 489 Protein_167 hypothetical protein -
OPA56_RS26290 (142090) 142090..142794 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OPA56_RS26295 (142846) 142846..143172 - 327 Protein_169 Tn3 family transposase TnpR_Tn3 Transposase
OPA56_RS26300 (143336) 143336..143554 + 219 WP_001143771.1 Tn3 family transposase TnpA_Tn3 Transposase
OPA56_RS26305 (143736) 143736..144998 + 1263 WP_000608644.1 IS1380 family transposase ISEcp1 Transposase
OPA56_RS26310 (145254) 145254..146129 + 876 WP_000239590.1 Beta-lactamase CTX-M-1 ARG
OPA56_RS26315 (146176) 146176..146469 - 294 WP_116961751.1 WbuC family cupin fold metalloprotein -
OPA56_RS26320 (146534) 146534..148753 + 2220 Protein_174 Tn3 family transposase TnpA_Tn3 Transposase
OPA56_RS26325 (148830) 148830..149534 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OPA56_RS26330 (149588) 149588..150028 - 441 Protein_176 CatB-related O-acetyltransferase -
OPA56_RS26335 (150166) 150166..150996 - 831 WP_001334766.1 Beta-lactamase OXA-1 ARG
OPA56_RS26340 (151127) 151127..151681 - 555 WP_063840321.1 Aminoglycoside N(6')-acetyltransferase type 1 ARG
OPA56_RS26345 (151825) 151825..152529 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
OPA56_RS26350 (152595) 152595..153959 + 1365 Protein_180 type IV secretion system DNA-binding domain-containing protein -
OPA56_RS26355 (153959) 153959..159229 + 5271 WP_042045338.1 Multifunctional conjugation protein TraI Relaxase
OPA56_RS26360 (159249) 159249..159995 + 747 WP_000205718.1 conjugal transfer pilus acetylase TraX -
OPA56_RS26365 (160050) 160050..160610 + 561 WP_000139341.1 fertility inhibition protein FinO -
OPA56_RS26370 (160741) 160741..160953 + 213 WP_013023861.1 hypothetical protein -
OPA56_RS26375 (161466) 161466..161752 + 287 Protein_185 DUF2726 domain-containing protein -
- (161719) 161719..161779 - 61 NuclAT_2 - Antitoxin Detail
- (161719) 161719..161779 - 61 NuclAT_2 - Antitoxin Detail
- (161719) 161719..161779 - 61 NuclAT_2 - Antitoxin Detail
- (161719) 161719..161779 - 61 NuclAT_2 - Antitoxin Detail
OPA56_RS26380 (161824) 161824..161958 + 135 WP_023144756.1 Hok/Gef family protein Toxin Detail
OPA56_RS26385 (162387) 162387..163133 - 747 WP_001016257.1 IS21 family transposase ISEc12 Transposase
OPA56_RS26390 (163148) 163148..164689 - 1542 WP_001298859.1 IS21 family transposase ISEc12 Transposase
OPA56_RS26395 (164880) 164880..165095 + 216 Protein_189 replication regulatory protein RepA -
OPA56_RS26400 (165201) 165201..165332 + 132 Protein_190 protein CopA/IncA -
OPA56_RS26405 (165332) 165332..165406 + 75 WP_031943482.1 RepA leader peptide Tap -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance