MGE detailed information
MGE type: Prophage MGE length: 41520 bp
Accession: NZ_AP025209 Location: 2448354..2489873 Organism: Escherichia coli strain 2017.06.04CC Replicon: chromosome
Accession: NZ_AP025209 Location: 2448354..2489873 Organism: Escherichia coli strain 2017.06.04CC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH28_RS11745 (2443744) | 2443744..2447268 | + | 3525 | WP_000628243.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| LPH28_RS11750 (2447635) | 2447635..2448288 | + | 654 | Protein_2302 | porin OmpN | - |
| LPH28_RS11755 (2448354) | 2448354..2449516 | + | 1163 | WP_085947771.1 | IS3-like element IS3 family transposase | - |
| LPH28_RS11760 (2449548) | 2449548..2450852 | - | 1305 | Protein_2304 | phage terminase large subunit family protein | - |
| LPH28_RS11765 (2450827) | 2450827..2451372 | - | 546 | WP_032187400.1 | DNA-packaging protein | - |
| LPH28_RS11770 (2451761) | 2451761..2451994 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LPH28_RS11775 (2452052) | 2452052..2452462 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LPH28_RS11780 (2452614) | 2452614..2452787 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LPH28_RS11785 (2452959) | 2452959..2453114 | - | 156 | WP_001309517.1 | protein YnfN | - |
| LPH28_RS11795 (2454454) | 2454454..2454519 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| LPH28_RS11800 (2454522) | 2454522..2454710 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| LPH28_RS11805 (2454721) | 2454721..2454933 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LPH28_RS11810 (2455295) | 2455295..2455792 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LPH28_RS11815 (2455789) | 2455789..2456322 | - | 534 | WP_001515369.1 | lysozyme | - |
| LPH28_RS11820 (2456378) | 2456378..2456692 | - | 315 | WP_001515370.1 | YdfR family protein | - |
| LPH28_RS11825 (2456697) | 2456697..2456912 | - | 216 | WP_001515371.1 | phage lysis protein EssD | - |
| LPH28_RS11830 (2457049) | 2457049..2458029 | + | 981 | WP_000019448.1 | IS5-like element ISKpn26 family transposase | - |
| LPH28_RS11835 (2458303) | 2458303..2459016 | - | 714 | WP_001146314.1 | helix-turn-helix domain-containing protein | - |
| LPH28_RS11840 (2459423) | 2459423..2460382 | - | 960 | WP_000592549.1 | DUF523 and DUF1722 domain-containing protein | - |
| LPH28_RS11845 (2460575) | 2460575..2461099 | + | 525 | WP_000780584.1 | lipocalin family protein | - |
| LPH28_RS11850 (2461255) | 2461255..2461632 | - | 378 | WP_001204787.1 | antiterminator Q family protein | - |
| LPH28_RS11855 (2461650) | 2461650..2462699 | - | 1050 | WP_229433885.1 | DUF968 domain-containing protein | - |
| LPH28_RS11860 (2462701) | 2462701..2462979 | - | 279 | WP_112951986.1 | hypothetical protein | - |
| LPH28_RS11865 (2463046) | 2463046..2463297 | - | 252 | WP_001463433.1 | protein Rem | - |
| LPH28_RS11870 (2463514) | 2463514..2463669 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LPH28_RS11875 (2463741) | 2463741..2464028 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LPH28_RS11880 (2464028) | 2464028..2464267 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LPH28_RS11885 (2464292) | 2464292..2464597 | + | 306 | WP_071593935.1 | protein YdfV | - |
| LPH28_RS11890 (2464800) | 2464800..2464916 | + | 117 | Protein_2330 | protein FlxA | - |
| LPH28_RS11895 (2464987) | 2464987..2465388 | + | 402 | WP_014639829.1 | transposase | - |
| LPH28_RS11900 (2465385) | 2465385..2465732 | + | 348 | WP_000612626.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| LPH28_RS11905 (2465781) | 2465781..2467319 | + | 1539 | WP_000099170.1 | IS66-like element ISEc22 family transposase | - |
| LPH28_RS11910 (2467357) | 2467357..2467581 | + | 225 | Protein_2334 | FlxA-like family protein | - |
| LPH28_RS11915 (2468018) | 2468018..2468167 | - | 150 | WP_011443592.1 | protein YdfW | - |
| LPH28_RS11920 (2468288) | 2468288..2469337 | - | 1050 | Protein_2336 | ISNCY family transposase | - |
| LPH28_RS11930 (2471416) | 2471416..2472616 | + | 1201 | Protein_2338 | MFS transporter | - |
| LPH28_RS11935 (2472628) | 2472628..2473149 | + | 522 | WP_229433887.1 | gamma-glutamylcyclotransferase | - |
| LPH28_RS11945 (2474366) | 2474366..2474656 | + | 291 | WP_229433889.1 | gamma-glutamylcyclotransferase | - |
| LPH28_RS11950 (2474653) | 2474653..2475534 | + | 882 | WP_000019009.1 | LysR family transcriptional regulator | - |
| LPH28_RS11955 (2475665) | 2475665..2476942 | - | 1278 | WP_000625667.1 | DUF2254 domain-containing protein | - |
| LPH28_RS11960 (2477006) | 2477006..2479003 | - | 1998 | WP_001676522.1 | choline BCCT transporter BetT | - |
| LPH28_RS11965 (2479344) | 2479344..2479766 | - | 423 | WP_112951940.1 | DUF977 family protein | - |
| LPH28_RS11970 (2479807) | 2479807..2480877 | - | 1071 | WP_001262352.1 | hypothetical protein | - |
| LPH28_RS11975 (2480949) | 2480949..2481374 | - | 426 | WP_000693836.1 | toxin YdaT family protein | - |
| LPH28_RS11980 (2481358) | 2481358..2481643 | - | 286 | Protein_2348 | helix-turn-helix domain-containing protein | - |
| LPH28_RS11985 (2481744) | 2481744..2482163 | + | 420 | WP_000362155.1 | hypothetical protein | - |
| LPH28_RS23925 (2482417) | 2482417..2482551 | + | 135 | WP_000233809.1 | phage protein | - |
| LPH28_RS11990 (2482562) | 2482562..2482717 | + | 156 | WP_001169151.1 | YdaF family protein | - |
| LPH28_RS11995 (2482714) | 2482714..2483202 | - | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| LPH28_RS12000 (2483644) | 2483644..2483865 | + | 222 | WP_000560225.1 | killing protein KilR | - |
| LPH28_RS12005 (2483865) | 2483865..2484035 | + | 171 | WP_001352098.1 | YdaE family protein | - |
| LPH28_RS12010 (2484110) | 2484110..2484385 | + | 276 | WP_000632297.1 | protein RacC | - |
| LPH28_RS12015 (2484487) | 2484487..2487087 | + | 2601 | WP_000105089.1 | exodeoxyribonuclease VIII | - |
| LPH28_RS12020 (2487080) | 2487080..2487889 | + | 810 | WP_063121190.1 | recombination protein RecT | - |
| LPH28_RS12025 (2487946) | 2487946..2488140 | + | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| - (2488139) | 2488139..2488317 | - | 179 | NuclAT_0 | - | - |
| - (2488139) | 2488139..2488317 | - | 179 | NuclAT_0 | - | - |
| - (2488139) | 2488139..2488317 | - | 179 | NuclAT_0 | - | - |
| - (2488139) | 2488139..2488317 | - | 179 | NuclAT_0 | - | - |
| LPH28_RS12030 (2488133) | 2488133..2488342 | + | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| LPH28_RS12035 (2488421) | 2488421..2488636 | + | 216 | WP_000079604.1 | excisionase XisR | - |
| LPH28_RS12040 (2488638) | 2488638..2489873 | + | 1236 | WP_000040852.1 | site-specific integrase | - |
| LPH28_RS12045 (2489925) | 2489925..2490860 | + | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| LPH28_RS12050 (2490989) | 2490989..2492362 | - | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| LPH28_RS12055 (2492392) | 2492392..2492565 | - | 174 | WP_001296046.1 | protein YnaL | - |
| LPH28_RS12060 (2492840) | 2492840..2493823 | - | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| LPH28_RS12065 (2493837) | 2493837..2493884 | - | 48 | WP_211180494.1 | protein YnaN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|