MGE detailed information
MGE type: Genomic_island MGE length: 9352 bp
Accession: NZ_AP025205 Location: 4090753..4100104 Organism: Escherichia coli strain 2017.04.03CC Replicon: chromosome
Accession: NZ_AP025205 Location: 4090753..4100104 Organism: Escherichia coli strain 2017.04.03CC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH27_RS19675 (4085914) | 4085914..4087215 | + | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| LPH27_RS19680 (4087331) | 4087331..4087669 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| LPH27_RS19685 (4087645) | 4087645..4089342 | + | 1698 | WP_000068902.1 | protein-disulfide reductase DsbD | - |
| LPH27_RS19690 (4089379) | 4089379..4089954 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| LPH27_RS19700 (4090753) | 4090753..4092291 | + | 1539 | WP_001187177.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| LPH27_RS19705 (4092657) | 4092657..4093991 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| LPH27_RS19710 (4094071) | 4094071..4096218 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| LPH27_RS19715 (4096277) | 4096277..4097734 | + | 1458 | WP_000856841.1 | dipeptide/tripeptide permease DtpC | - |
| LPH27_RS19720 (4097971) | 4097971..4099488 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| LPH27_RS19725 (4099607) | 4099607..4099780 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| LPH27_RS19730 (4099808) | 4099808..4100104 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| LPH27_RS19735 (4100331) | 4100331..4100603 | - | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| LPH27_RS19740 (4100615) | 4100615..4100845 | - | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
| LPH27_RS19745 (4101026) | 4101026..4102657 | + | 1632 | WP_001565376.1 | sensor histidine kinase | - |
| LPH27_RS19750 (4102654) | 4102654..4103373 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.003 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.003 |