MGE detailed information
MGE type: Prophage MGE length: 70591 bp
Accession: NZ_AP025180 Location: 93474..164064 Organism: Escherichia coli strain JP538 Replicon: chromosome
Accession: NZ_AP025180 Location: 93474..164064 Organism: Escherichia coli strain JP538 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R5G_RS00465 (88980) | 88980..90506 | - | 1527 | WP_219351115.1 | p-aminobenzoyl-glutamate transporter | - |
| R5G_RS00470 (90543) | 90543..91988 | - | 1446 | WP_032231063.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgB | - |
| R5G_RS00475 (91988) | 91988..93298 | - | 1311 | WP_032231065.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgA | - |
| R5G_RS00480 (93474) | 93474..94382 | + | 909 | WP_032231066.1 | LysR family transcriptional regulator | - |
| R5G_RS00485 (94749) | 94749..95978 | + | 1230 | WP_063118922.1 | hypothetical protein ; Integrase | Integrase |
| R5G_RS00490 (96342) | 96342..96530 | + | 189 | WP_001409403.1 | AlpA family transcriptional regulator | - |
| R5G_RS00495 (96583) | 96583..97113 | + | 531 | Protein_98 | hypothetical protein | - |
| R5G_RS00500 (97122) | 97122..97301 | - | 180 | WP_000201464.1 | YlcI/YnfO family protein | - |
| R5G_RS00505 (97501) | 97501..97707 | + | 207 | WP_001247061.1 | host cell division inhibitor Icd-like protein | - |
| R5G_RS00510 (97697) | 97697..97933 | + | 237 | WP_001295449.1 | hypothetical protein | - |
| R5G_RS00515 (97926) | 97926..98153 | + | 228 | WP_000543625.1 | hypothetical protein | - |
| R5G_RS00520 (98159) | 98159..98446 | + | 288 | WP_000810459.1 | DUF4222 domain-containing protein | - |
| R5G_RS00525 (98443) | 98443..100257 | + | 1815 | WP_001735913.1 | primase-like DNA-binding domain-containing protein | - |
| R5G_RS00530 (100545) | 100545..100790 | + | 246 | WP_024210327.1 | hypothetical protein | - |
| R5G_RS00535 (100787) | 100787..101212 | + | 426 | WP_000126639.1 | single-stranded DNA-binding protein | - |
| R5G_RS00540 (101249) | 101249..101779 | + | 531 | WP_000209991.1 | ProQ/FinO family protein | - |
| R5G_RS00545 (101770) | 101770..102018 | + | 249 | WP_001145410.1 | hypothetical protein | - |
| R5G_RS00550 (102292) | 102292..103437 | + | 1146 | WP_000733262.1 | phage major capsid protein | - |
| R5G_RS00555 (103487) | 103487..104047 | + | 561 | WP_169000764.1 | HK97 family phage prohead protease | - |
| R5G_RS00560 (104049) | 104049..105263 | + | 1215 | WP_000270245.1 | phage portal protein | - |
| R5G_RS00565 (105256) | 105256..105558 | + | 303 | WP_001287547.1 | head-tail connector protein | - |
| R5G_RS00570 (105558) | 105558..105998 | + | 441 | WP_001145897.1 | HNH endonuclease | - |
| R5G_RS00575 (105982) | 105982..106167 | + | 186 | WP_001251186.1 | hypothetical protein | - |
| R5G_RS00580 (106287) | 106287..106643 | + | 357 | WP_001353110.1 | phage terminase small subunit P27 family | - |
| R5G_RS00585 (106627) | 106627..108288 | + | 1662 | WP_169006745.1 | terminase large subunit | - |
| R5G_RS00590 (108294) | 108294..108578 | + | 285 | WP_001735905.1 | hypothetical protein | - |
| R5G_RS00595 (109347) | 109347..109910 | + | 564 | WP_001046832.1 | DNA endonuclease SmrA | - |
| R5G_RS00600 (109931) | 109931..111163 | - | 1233 | WP_000628065.1 | diguanylate cyclase DgcM | - |
| R5G_RS00605 (111357) | 111357..111404 | + | 48 | WP_211180494.1 | protein YnaN | - |
| R5G_RS00610 (111418) | 111418..112401 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| R5G_RS25670 (112676) | 112676..112849 | + | 174 | WP_001296046.1 | protein YnaL | - |
| R5G_RS00615 (112879) | 112879..114252 | + | 1374 | WP_000123745.1 | ATP-dependent RNA helicase DbpA | - |
| R5G_RS00620 (114381) | 114381..115316 | - | 936 | WP_000662472.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| R5G_RS00625 (115368) | 115368..116603 | - | 1236 | WP_000040839.1 | hypothetical protein ; Integrase | Integrase |
| R5G_RS00630 (116605) | 116605..116820 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (116924) | 116924..117102 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (116924) | 116924..117102 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (116924) | 116924..117102 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (116924) | 116924..117102 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| R5G_RS00635 (116920) | 116920..117108 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| R5G_RS00640 (117146) | 117146..117295 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| R5G_RS00645 (117351) | 117351..118160 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| R5G_RS00650 (118153) | 118153..120753 | - | 2601 | WP_000105140.1 | exodeoxyribonuclease VIII | - |
| R5G_RS00655 (120855) | 120855..121130 | - | 276 | WP_000632297.1 | protein RacC | - |
| R5G_RS00660 (121205) | 121205..121375 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| R5G_RS00665 (121375) | 121375..121596 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| R5G_RS00670 (122038) | 122038..122526 | + | 489 | WP_010377803.1 | superinfection exclusion B family protein | - |
| R5G_RS00675 (122523) | 122523..122678 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| R5G_RS25675 (122689) | 122689..122823 | - | 135 | WP_000233808.1 | hypothetical protein | - |
| R5G_RS00680 (123114) | 123114..123533 | - | 420 | WP_000233320.1 | helix-turn-helix domain-containing protein | - |
| R5G_RS00685 (123613) | 123613..123867 | + | 255 | WP_001072343.1 | hypothetical protein | - |
| R5G_RS00690 (123864) | 123864..124286 | + | 423 | WP_000693802.1 | toxin YdaT family protein | - |
| R5G_RS00695 (124299) | 124299..125156 | + | 858 | WP_096215919.1 | YdaU family protein | - |
| R5G_RS00700 (125163) | 125163..125909 | + | 747 | WP_000788968.1 | ATP-binding protein | - |
| R5G_RS00705 (125932) | 125932..126693 | + | 762 | WP_000450674.1 | DUF1627 domain-containing protein | - |
| R5G_RS00710 (126709) | 126709..127125 | + | 417 | WP_001151122.1 | DUF977 family protein | - |
| R5G_RS00715 (127324) | 127324..128286 | + | 963 | WP_014639476.1 | hypothetical protein | - |
| R5G_RS00720 (128302) | 128302..129303 | + | 1002 | WP_000354966.1 | hypothetical protein | - |
| R5G_RS00725 (129924) | 129924..130262 | - | 339 | WP_000149055.1 | DUF1971 domain-containing protein | - |
| R5G_RS00730 (131076) | 131076..131675 | + | 600 | WP_000940319.1 | DUF1367 family protein | - |
| R5G_RS00735 (131675) | 131675..131965 | + | 291 | WP_000247763.1 | DUF1364 domain-containing protein | - |
| R5G_RS00740 (131962) | 131962..132504 | + | 543 | WP_001614531.1 | DUF1133 family protein | - |
| R5G_RS00745 (133717) | 133717..133977 | + | 261 | Protein_150 | cell envelope integrity protein TolA | - |
| R5G_RS00750 (134149) | 134149..134523 | + | 375 | WP_001348108.1 | cell envelope integrity TolA C-terminal domain-containing protein | - |
| R5G_RS00755 (134775) | 134775..134990 | + | 216 | WP_000839565.1 | phage lysis protein EssD | - |
| R5G_RS00760 (134990) | 134990..135487 | + | 498 | WP_001135310.1 | lysozyme RrrD | - |
| R5G_RS25680 (135704) | 135704..135889 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| R5G_RS00775 (136086) | 136086..137543 | + | 1458 | WP_024194373.1 | Trk system potassium transporter TrkG | - |
| R5G_RS00780 (137681) | 137681..137938 | + | 258 | Protein_156 | ParB/Srx family N-terminal domain-containing protein | - |
| R5G_RS00785 (138462) | 138462..139394 | + | 933 | WP_001614535.1 | hypothetical protein | - |
| R5G_RS00790 (139372) | 139372..139581 | + | 210 | WP_000126788.1 | hypothetical protein | - |
| R5G_RS00795 (139585) | 139585..140679 | + | 1095 | WP_024240905.1 | terminase small subunit | - |
| R5G_RS00800 (140660) | 140660..141961 | + | 1302 | WP_000625348.1 | terminase family protein | - |
| R5G_RS00805 (141964) | 141964..143370 | + | 1407 | WP_240993061.1 | DUF4055 domain-containing protein | - |
| R5G_RS00810 (143354) | 143354..144466 | + | 1113 | WP_096215917.1 | phage minor head protein | - |
| R5G_RS00815 (144571) | 144571..145335 | + | 765 | WP_000770040.1 | hypothetical protein | - |
| R5G_RS00820 (145434) | 145434..146573 | + | 1140 | WP_001526967.1 | P22 phage major capsid protein family protein | - |
| R5G_RS00825 (146616) | 146616..146792 | + | 177 | WP_000908084.1 | hypothetical protein | - |
| R5G_RS00830 (146796) | 146796..147191 | + | 396 | WP_000634210.1 | hypothetical protein | - |
| R5G_RS00835 (147191) | 147191..147574 | + | 384 | WP_000524260.1 | hypothetical protein | - |
| R5G_RS00840 (147575) | 147575..147955 | + | 381 | WP_096215915.1 | hypothetical protein | - |
| R5G_RS00845 (147952) | 147952..148344 | + | 393 | WP_096215914.1 | phage tail terminator-like protein | - |
| R5G_RS00850 (148371) | 148371..149333 | + | 963 | WP_052924055.1 | phage tail tube protein | - |
| R5G_RS00855 (149484) | 149484..149843 | + | 360 | WP_122997133.1 | protein YdaY | - |
| R5G_RS00860 (150315) | 150315..153548 | + | 3234 | WP_096215912.1 | phage tail tape measure protein | - |
| R5G_RS00865 (153541) | 153541..153879 | + | 339 | WP_000024053.1 | phage tail protein | - |
| R5G_RS00870 (153879) | 153879..154577 | + | 699 | WP_021540947.1 | phage minor tail protein L | - |
| R5G_RS00875 (154583) | 154583..155326 | + | 744 | WP_097292699.1 | C40 family peptidase | - |
| R5G_RS00880 (155224) | 155224..155871 | + | 648 | WP_074511506.1 | tail assembly protein | - |
| R5G_RS00885 (155932) | 155932..159345 | + | 3414 | WP_240993062.1 | host specificity protein J | - |
| R5G_RS00890 (159415) | 159415..160014 | + | 600 | WP_112014603.1 | hypothetical protein | VF |
| R5G_RS00895 (160079) | 160079..163480 | + | 3402 | WP_126502595.1 | prophage tail fiber N-terminal domain-containing protein | - |
| R5G_RS00900 (163480) | 163480..164064 | + | 585 | WP_096216083.1 | tail fiber assembly protein | - |
| R5G_RS00905 (164277) | 164277..165134 | - | 858 | WP_000968131.1 | iron/manganese ABC transporter permease subunit SitD | - |
| R5G_RS00910 (165131) | 165131..165988 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| R5G_RS00915 (165985) | 165985..166812 | - | 828 | WP_000983721.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| R5G_RS00920 (166812) | 166812..167726 | - | 915 | WP_000286867.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| R5G_RS00925 (168311) | 168311..168745 | - | 435 | WP_001295593.1 | universal stress protein UspF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|