MGE detailed information
MGE type: Prophage MGE length: 66698 bp
Accession: NZ_AP025180 Location: 343023..409720 Organism: Escherichia coli strain JP538 Replicon: chromosome
Accession: NZ_AP025180 Location: 343023..409720 Organism: Escherichia coli strain JP538 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R5G_RS01655 (339538) | 339538..340284 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| R5G_RS01660 (340373) | 340373..341059 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| R5G_RS01665 (341236) | 341236..341439 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| R5G_RS01670 (341474) | 341474..342934 | - | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| R5G_RS01675 (343023) | 343023..344390 | - | 1368 | Protein_335 | MHS family MFS transporter | - |
| R5G_RS01680 (344911) | 344911..345024 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| R5G_RS01685 (345093) | 345093..345326 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| R5G_RS01690 (345643) | 345643..346233 | + | 591 | WP_096216155.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| R5G_RS01695 (346331) | 346331..346906 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| R5G_RS01700 (346906) | 346906..349980 | - | 3075 | WP_240993070.1 | phage tail protein | - |
| R5G_RS01705 (350045) | 350045..350644 | - | 600 | WP_047657799.1 | hypothetical protein | VF |
| R5G_RS01710 (350715) | 350715..354212 | - | 3498 | WP_240993071.1 | host specificity protein J | - |
| R5G_RS01715 (354273) | 354273..354845 | - | 573 | WP_000847704.1 | tail assembly protein | - |
| R5G_RS01720 (354842) | 354842..355585 | - | 744 | WP_047088332.1 | C40 family peptidase | - |
| R5G_RS01725 (355591) | 355591..356289 | - | 699 | WP_001152535.1 | phage minor tail protein L | - |
| R5G_RS01730 (356289) | 356289..356618 | - | 330 | WP_000847345.1 | phage tail protein | - |
| R5G_RS01735 (356615) | 356615..359176 | - | 2562 | WP_096216162.1 | phage tail tape measure protein | - |
| R5G_RS01740 (359169) | 359169..359603 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| R5G_RS01745 (359585) | 359585..360007 | - | 423 | WP_001564532.1 | phage minor tail protein G | - |
| R5G_RS01750 (360023) | 360023..360763 | - | 741 | WP_096216167.1 | phage tail protein | - |
| R5G_RS01755 (360771) | 360771..361166 | - | 396 | WP_096216163.1 | phage minor tail U family protein | - |
| R5G_RS01760 (361163) | 361163..361741 | - | 579 | WP_000985116.1 | phage tail protein | - |
| R5G_RS01765 (361753) | 361753..362106 | - | 354 | WP_096216164.1 | head-tail joining protein | - |
| R5G_RS01770 (362118) | 362118..362513 | - | 396 | WP_000158868.1 | DNA-packaging protein FI | - |
| R5G_RS01775 (362555) | 362555..363580 | - | 1026 | WP_000063238.1 | major capsid protein | - |
| R5G_RS01780 (363636) | 363636..363968 | - | 333 | WP_001299443.1 | head decoration protein | - |
| R5G_RS01785 (363978) | 363978..365297 | - | 1320 | WP_000123271.1 | S49 family peptidase | - |
| R5G_RS01790 (365278) | 365278..366879 | - | 1602 | WP_001349919.1 | phage portal protein | - |
| R5G_RS01795 (366876) | 366876..367082 | - | 207 | WP_000198149.1 | gpW family protein | - |
| R5G_RS01800 (367079) | 367079..369004 | - | 1926 | WP_001027259.1 | phage terminase large subunit family protein | - |
| R5G_RS01805 (368979) | 368979..369524 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| R5G_RS01810 (369913) | 369913..370146 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| R5G_RS01815 (370204) | 370204..370614 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| R5G_RS01820 (370766) | 370766..370939 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| R5G_RS01825 (371111) | 371111..371266 | - | 156 | WP_001309517.1 | protein YnfN | - |
| R5G_RS01830 (371345) | 371345..371410 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| R5G_RS01835 (371413) | 371413..371601 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| R5G_RS01840 (371612) | 371612..371824 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| R5G_RS01845 (372187) | 372187..372684 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| R5G_RS01850 (372681) | 372681..373214 | - | 534 | WP_001092971.1 | lysozyme | - |
| R5G_RS01855 (373211) | 373211..373522 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| R5G_RS01860 (373527) | 373527..373742 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| R5G_RS01865 (373962) | 373962..374132 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| R5G_RS01870 (374496) | 374496..374711 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| R5G_RS01875 (375012) | 375012..375224 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| R5G_RS01880 (375279) | 375279..375368 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| R5G_RS01885 (375646) | 375646..376398 | - | 753 | WP_001047135.1 | antitermination protein | - |
| R5G_RS01890 (376412) | 376412..377461 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| R5G_RS01895 (377463) | 377463..377741 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| R5G_RS01900 (377808) | 377808..378059 | - | 252 | WP_000980994.1 | protein Rem | - |
| R5G_RS01905 (378276) | 378276..378431 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| R5G_RS01910 (378503) | 378503..378790 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| R5G_RS01915 (378790) | 378790..379029 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| R5G_RS01920 (379054) | 379054..379359 | + | 306 | WP_001326990.1 | protein YdfV | - |
| R5G_RS01925 (379662) | 379662..380312 | + | 651 | WP_000993956.1 | IS66 family transposase IS679 | Transposase |
| R5G_RS01930 (380312) | 380312..380659 | + | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| R5G_RS01935 (380679) | 380679..382250 | + | 1572 | WP_000381442.1 | IS66 family transposase IS679 | Transposase |
| R5G_RS01940 (382265) | 382265..382606 | + | 342 | WP_096215997.1 | FlxA-like family protein | - |
| R5G_RS01945 (383043) | 383043..383192 | - | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| R5G_RS01950 (383313) | 383313..384335 | - | 1023 | Protein_390 | ISNCY family transposase ISCARN112 | Transposase |
| R5G_RS01955 (385125) | 385125..385412 | - | 288 | Protein_391 | hypothetical protein | - |
| R5G_RS01960 (385890) | 385890..386379 | - | 490 | Protein_392 | class I SAM-dependent methyltransferase | - |
| R5G_RS01965 (386376) | 386376..386798 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| R5G_RS01970 (386839) | 386839..387804 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| R5G_RS01975 (387785) | 387785..388306 | - | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| R5G_RS01980 (388290) | 388290..388520 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| R5G_RS01985 (388604) | 388604..389011 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| R5G_RS01990 (389178) | 389178..389333 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| R5G_RS25690 (389335) | 389335..389463 | + | 129 | WP_000344964.1 | protein YdfB | - |
| R5G_RS01995 (389493) | 389493..389711 | + | 219 | WP_001171942.1 | protein YdfC | - |
| R5G_RS02000 (390279) | 390279..390467 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| R5G_RS02005 (390464) | 390464..390655 | + | 192 | WP_085442770.1 | lysis protein YdfD | - |
| R5G_RS02010 (390748) | 390748..393219 | + | 2472 | WP_000048342.1 | exonuclease | - |
| R5G_RS02015 (393292) | 393292..393543 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| R5G_RS02020 (393578) | 393578..394858 | + | 1281 | WP_000876958.1 | hypothetical protein ; Integrase | Integrase |
| R5G_RS02025 (395046) | 395046..395468 | - | 423 | Protein_406 | zinc-binding dehydrogenase | - |
| R5G_RS02030 (395507) | 395507..397045 | - | 1539 | WP_097335746.1 | IS66 family transposase ISEc8 | Transposase |
| R5G_RS02035 (397095) | 397095..397442 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| R5G_RS02040 (397439) | 397439..397819 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| R5G_RS02045 (397913) | 397913..398515 | - | 603 | Protein_410 | Zn-dependent oxidoreductase | - |
| R5G_RS02050 (398527) | 398527..399741 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| R5G_RS02055 (399947) | 399947..400273 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| R5G_RS02060 (400408) | 400408..400749 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| R5G_RS02065 (400784) | 400784..401344 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| R5G_RS02070 (401347) | 401347..402057 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| R5G_RS02075 (402165) | 402165..402470 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| R5G_RS02080 (402669) | 402669..405095 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| R5G_RS02085 (405156) | 405156..407579 | + | 2424 | WP_096216161.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| R5G_RS02090 (407590) | 407590..408207 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| R5G_RS02095 (408209) | 408209..409063 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| R5G_RS02100 (409106) | 409106..409720 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| R5G_RS02105 (409879) | 409879..411171 | + | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| R5G_RS02110 (411124) | 411124..411819 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| R5G_RS02115 (411944) | 411944..413164 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| R5G_RS02120 (413299) | 413299..414192 | - | 894 | WP_001019525.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|