Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 378503..379029 | Replicon | chromosome |
| Accession | NZ_AP025180 | ||
| Organism | Escherichia coli strain JP538 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | R5G_RS01910 | Protein ID | WP_000323025.1 |
| Coordinates | 378503..378790 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | R5G_RS01915 | Protein ID | WP_000534858.1 |
| Coordinates | 378790..379029 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R5G_RS01860 (373527) | 373527..373742 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| R5G_RS01865 (373962) | 373962..374132 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| R5G_RS01870 (374496) | 374496..374711 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| R5G_RS01875 (375012) | 375012..375224 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| R5G_RS01880 (375279) | 375279..375368 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| R5G_RS01885 (375646) | 375646..376398 | - | 753 | WP_001047135.1 | antitermination protein | - |
| R5G_RS01890 (376412) | 376412..377461 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| R5G_RS01895 (377463) | 377463..377741 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| R5G_RS01900 (377808) | 377808..378059 | - | 252 | WP_000980994.1 | protein Rem | - |
| R5G_RS01905 (378276) | 378276..378431 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| R5G_RS01910 (378503) | 378503..378790 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| R5G_RS01915 (378790) | 378790..379029 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| R5G_RS01920 (379054) | 379054..379359 | + | 306 | WP_001326990.1 | protein YdfV | - |
| R5G_RS01925 (379662) | 379662..380312 | + | 651 | WP_000993956.1 | IS66-like element accessory protein TnpA | - |
| R5G_RS01930 (380312) | 380312..380659 | + | 348 | WP_000624618.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| R5G_RS01935 (380679) | 380679..382250 | + | 1572 | WP_000381442.1 | IS66 family transposase | - |
| R5G_RS01940 (382265) | 382265..382606 | + | 342 | WP_096215997.1 | FlxA-like family protein | - |
| R5G_RS01945 (383043) | 383043..383192 | - | 150 | WP_011443592.1 | protein YdfW | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 343023..409720 | 66697 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T40032 WP_000323025.1 NZ_AP025180:c378790-378503 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T40032 NZ_AP025180:c378790-378503 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT40032 WP_000534858.1 NZ_AP025180:c379029-378790 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT40032 NZ_AP025180:c379029-378790 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|