MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 62203 bp
Accession: NZ_AP025169 Location: 1888455..1950657 Organism: Pseudomonas sp. CYM-20-01 Replicon: chromosome
Accession: NZ_AP025169 Location: 1888455..1950657 Organism: Pseudomonas sp. CYM-20-01 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2497_RS08395 (cym2001_16520) | 1883462..1883935 | - | 474 | WP_248486821.1 | peroxiredoxin | - |
| M2497_RS08400 (cym2001_16530) | 1883946..1884506 | - | 561 | WP_003172487.1 | glycine cleavage system protein R | - |
| M2497_RS08405 (cym2001_16540) | 1884780..1885658 | + | 879 | WP_016975174.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| M2497_RS08410 (cym2001_16550) | 1885676..1886791 | + | 1116 | WP_248486823.1 | outer membrane protein assembly factor BamC | - |
| M2497_RS08415 (cym2001_16560) | 1886796..1887554 | + | 759 | WP_248486825.1 | MBL fold metallo-hydrolase | - |
| M2497_RS08420 (cym2001_16570) | 1887582..1888295 | + | 714 | WP_010212191.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| M2497_RS08430 (cym2001_16580) | 1888751..1890385 | - | 1635 | WP_248486827.1 | MobH family relaxase | - |
| M2497_RS08435 (cym2001_16590) | 1890606..1890977 | + | 372 | WP_248486828.1 | DUF3742 family protein | - |
| M2497_RS08440 (cym2001_16600) | 1890986..1892491 | - | 1506 | WP_248486829.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| M2497_RS08445 (cym2001_16610) | 1892488..1892829 | - | 342 | WP_248486830.1 | hypothetical protein | - |
| M2497_RS08450 (cym2001_16620) | 1892831..1894147 | - | 1317 | WP_248488182.1 | integrating conjugative element protein | - |
| M2497_RS08455 (cym2001_16630) | 1894190..1895122 | - | 933 | WP_248486831.1 | TIGR03756 family integrating conjugative element protein | - |
| M2497_RS08460 (cym2001_16640) | 1895329..1895823 | + | 495 | WP_248486832.1 | DUF2165 domain-containing protein | - |
| M2497_RS08465 (cym2001_16650) | 1895888..1896187 | - | 300 | WP_248486834.1 | hypothetical protein | - |
| M2497_RS08470 (cym2001_16660) | 1896441..1896938 | - | 498 | WP_248486836.1 | GNAT family N-acetyltransferase | Toxin Detail |
| M2497_RS08475 (cym2001_16670) | 1896938..1897216 | - | 279 | WP_248486839.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| M2497_RS08480 | 1897280..1897783 | - | 504 | WP_248486840.1 | DNA repair protein RadC | - |
| M2497_RS08485 (cym2001_16690) | 1898324..1899352 | - | 1029 | WP_248486841.1 | restriction endonuclease | - |
| M2497_RS08490 | 1899457..1900605 | - | 1149 | WP_248486842.1 | hypothetical protein | - |
| M2497_RS08495 (cym2001_16710) | 1900773..1901426 | - | 654 | WP_248486843.1 | DUF2971 domain-containing protein | - |
| M2497_RS08500 (cym2001_16720) | 1901527..1901838 | - | 312 | WP_169892602.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| M2497_RS08505 (cym2001_16730) | 1901904..1904723 | - | 2820 | WP_248486844.1 | conjugative transfer ATPase | - |
| M2497_RS08510 (cym2001_16740) | 1904723..1905139 | - | 417 | WP_248486845.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| M2497_RS08515 (cym2001_16750) | 1905120..1906499 | - | 1380 | WP_248486847.1 | TIGR03752 family integrating conjugative element protein | - |
| M2497_RS08520 (cym2001_16760) | 1906489..1907328 | - | 840 | WP_248486849.1 | TIGR03749 family integrating conjugative element protein | - |
| M2497_RS08525 (cym2001_16770) | 1907325..1907984 | - | 660 | WP_248486851.1 | TIGR03746 family integrating conjugative element protein | - |
| M2497_RS08530 (cym2001_16780) | 1907981..1908373 | - | 393 | WP_248486853.1 | TIGR03750 family conjugal transfer protein | - |
| M2497_RS08535 (cym2001_16790) | 1908383..1908712 | - | 330 | WP_123750543.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| M2497_RS08540 (cym2001_16800) | 1908766..1908999 | - | 234 | WP_169892604.1 | TIGR03758 family integrating conjugative element protein | - |
| M2497_RS08545 (cym2001_16810) | 1908989..1909336 | - | 348 | WP_248486855.1 | RAQPRD family integrative conjugative element protein | - |
| M2497_RS08550 (cym2001_16820) | 1909552..1912497 | - | 2946 | WP_248486857.1 | DEAD/DEAH box helicase family protein | - |
| M2497_RS08555 (cym2001_16830) | 1912653..1913396 | - | 744 | WP_248486859.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| M2497_RS08560 (cym2001_16840) | 1913431..1915452 | - | 2022 | Protein_1686 | type IV conjugative transfer system coupling protein TraD | - |
| M2497_RS08565 (cym2001_16850) | 1915454..1915873 | - | 420 | WP_248486861.1 | integrating conjugative element protein | - |
| M2497_RS08570 (cym2001_16860) | 1915870..1916433 | - | 564 | WP_248486863.1 | hypothetical protein | VF |
| M2497_RS08575 (cym2001_16870) | 1916418..1917164 | - | 747 | WP_248486865.1 | TIGR03759 family integrating conjugative element protein | - |
| M2497_RS08580 (cym2001_16880) | 1917168..1917803 | - | 636 | WP_248486867.1 | hypothetical protein | - |
| M2497_RS08585 (cym2001_16890) | 1917800..1918243 | - | 444 | WP_282579055.1 | hypothetical protein | VF |
| M2497_RS08590 (cym2001_16900) | 1918411..1919055 | - | 645 | WP_248486871.1 | hypothetical protein | - |
| M2497_RS08595 (cym2001_16910) | 1919128..1919421 | - | 294 | WP_248486873.1 | hypothetical protein | - |
| M2497_RS08600 (cym2001_16920) | 1919497..1919970 | - | 474 | WP_248486875.1 | STY4534 family ICE replication protein | - |
| M2497_RS08605 (cym2001_16930) | 1920258..1920977 | - | 720 | WP_248486877.1 | ABC transporter substrate-binding protein | - |
| M2497_RS08610 (cym2001_16940) | 1921054..1921446 | - | 393 | WP_248486879.1 | hypothetical protein | - |
| M2497_RS08615 (cym2001_16950) | 1922415..1925738 | + | 3324 | WP_248486881.1 | hypothetical protein | - |
| M2497_RS08620 (cym2001_16960) | 1925901..1930400 | + | 4500 | WP_248486883.1 | hypothetical protein | - |
| M2497_RS08625 (cym2001_16970) | 1930481..1931233 | + | 753 | WP_248486885.1 | hypothetical protein | - |
| M2497_RS08630 (cym2001_16980) | 1931319..1932542 | + | 1224 | WP_248486886.1 | DUF1173 family protein | - |
| M2497_RS08635 (cym2001_16990) | 1932858..1933259 | - | 402 | WP_248486887.1 | single-stranded DNA-binding protein | - |
| M2497_RS08640 (cym2001_17000) | 1933256..1933732 | - | 477 | WP_248486888.1 | DUF3158 family protein | - |
| M2497_RS08645 (cym2001_17010) | 1933720..1934478 | - | 759 | WP_248486889.1 | TIGR03761 family integrating conjugative element protein | - |
| M2497_RS08650 (cym2001_17020) | 1934634..1935770 | - | 1137 | WP_248486890.1 | STY4528 family pathogenicity island replication protein | - |
| M2497_RS08655 (cym2001_17030) | 1935774..1936334 | - | 561 | WP_248486891.1 | DUF2857 domain-containing protein | - |
| M2497_RS08660 (cym2001_17040) | 1936331..1937650 | - | 1320 | WP_248486892.1 | hypothetical protein | - |
| M2497_RS08665 (cym2001_17050) | 1937643..1937846 | - | 204 | WP_102591965.1 | hypothetical protein | - |
| M2497_RS08670 (cym2001_17060) | 1937836..1938687 | - | 852 | WP_248486894.1 | Chromosome partitioning protein ParA | VF |
| M2497_RS08675 (cym2001_17070) | 1938700..1938918 | - | 219 | WP_123750546.1 | AlpA family transcriptional regulator | - |
| M2497_RS08680 (cym2001_17080) | 1939326..1939952 | + | 627 | WP_248486895.1 | hypothetical protein | - |
| M2497_RS08685 (cym2001_17090) | 1940152..1940886 | - | 735 | WP_248486896.1 | ATP-binding protein | - |
| M2497_RS08690 (cym2001_17100) | 1941304..1942218 | - | 915 | WP_248486897.1 | DMT family transporter | - |
| M2497_RS08695 (cym2001_17110) | 1942212..1943102 | - | 891 | WP_248486898.1 | 2OG-Fe(II) oxygenase family protein | - |
| M2497_RS08700 (cym2001_17120) | 1943199..1944182 | - | 984 | WP_248486899.1 | hypothetical protein | - |
| M2497_RS08705 (cym2001_17130) | 1944345..1945199 | + | 855 | WP_248486900.1 | HTH-type transcriptional regulator YofA | VF |
| M2497_RS08710 (cym2001_17140) | 1945501..1948113 | - | 2613 | WP_169892581.1 | AAA family ATPase | - |
| M2497_RS08715 (cym2001_17150) | 1948374..1949150 | - | 777 | WP_169892583.1 | hypothetical protein | - |
| M2497_RS08720 (cym2001_17160) | 1949257..1950459 | - | 1203 | WP_169892585.1 | Prophage integrase IntS ; Integrase | Integrase |
| M2497_RS08725 (cym2001_17180) | 1951065..1952291 | - | 1227 | WP_248486901.1 | MFS transporter | - |
| M2497_RS08730 (cym2001_17190) | 1952617..1952829 | - | 213 | WP_248486903.1 | hypothetical protein | - |
| M2497_RS08735 (cym2001_17200) | 1952896..1953105 | - | 210 | WP_248486905.1 | cold shock domain-containing protein | - |
| M2497_RS08740 (cym2001_17210) | 1953286..1954110 | - | 825 | WP_248488183.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|