MGE detailed information
MGE type: Mobilizable plasmid MGE length: 107444 bp
Accession: NZ_AP025013 Location: 1..107444 Organism: Raoultella ornithinolytica strain NUITM-VR1 Replicon: plasmid pNUITM-VR1_4
Accession: NZ_AP025013 Location: 1..107444 Organism: Raoultella ornithinolytica strain NUITM-VR1 Replicon: plasmid pNUITM-VR1_4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO46_RS30755 (NUITMVR1_60760) | 1..720 | + | 720 | WP_000359513.1 | replication initiation protein | - |
| LDO46_RS30760 (NUITMVR1_60780) | 2448..3149 | - | 702 | WP_224050222.1 | IS6 family transposase IS15DI | Transposase |
| LDO46_RS30765 (NUITMVR1_60790) | 3099..3440 | + | 342 | Protein_2 | site-specific integrase | - |
| LDO46_RS30770 (NUITMVR1_60800) | 3437..5476 | + | 2040 | WP_034039551.1 | hypothetical protein | - |
| LDO46_RS30775 (NUITMVR1_60810) | 5457..5921 | + | 465 | WP_023443007.1 | hypothetical protein | - |
| LDO46_RS30780 (NUITMVR1_60820) | 5989..8679 | - | 2691 | WP_058131653.1 | AAA family ATPase | - |
| LDO46_RS30785 (NUITMVR1_60830) | 9120..9677 | - | 558 | WP_224050192.1 | transcriptional regulator | - |
| LDO46_RS30790 (NUITMVR1_60840) | 9857..11020 | + | 1164 | WP_088903431.1 | Multidrug efflux pump subunit AcrA | VF |
| LDO46_RS30795 (NUITMVR1_60850) | 11036..14170 | + | 3135 | WP_224050191.1 | Multidrug resistance protein MexB | VF |
| LDO46_RS30800 (NUITMVR1_60860) | 14175..15608 | + | 1434 | WP_003152694.1 | Outer membrane protein OprJ | VF |
| LDO46_RS30805 (NUITMVR1_60870) | 16038..16268 | - | 231 | Protein_10 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| LDO46_RS30810 (NUITMVR1_60880) | 16394..17008 | + | 615 | WP_000904906.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LDO46_RS30815 | 17074..17877 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| LDO46_RS30820 (NUITMVR1_60910) | 17877..18713 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| LDO46_RS30825 (NUITMVR1_60920) | 18783..18950 | - | 168 | Protein_14 | IS5 family transposase IS903B | Transposase |
| LDO46_RS30830 (NUITMVR1_60930) | 19013..19717 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LDO46_RS30835 (NUITMVR1_60940) | 19770..20195 | - | 426 | Protein_16 | IS5 family transposase ISKpn26 | Transposase |
| LDO46_RS30840 (NUITMVR1_60950) | 20475..21020 | + | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| LDO46_RS30845 (NUITMVR1_60960) | 21157..21729 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| LDO46_RS30850 (NUITMVR1_60980) | 21766..23141 | + | 1376 | Protein_19 | ISKra4 family transposase ISKpn19 | Transposase |
| LDO46_RS30855 (NUITMVR1_60990) | 23174..23602 | + | 429 | Protein_20 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LDO46_RS30860 (NUITMVR1_61000) | 23921..24577 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| LDO46_RS30865 | 24972..26104 | + | 1133 | Protein_22 | IS3 family transposase ISAs17 | Transposase |
| LDO46_RS30870 (NUITMVR1_61030) | 26160..26798 | - | 639 | Protein_23 | IS6 family transposase IS15DI | Transposase |
| LDO46_RS30875 (NUITMVR1_61040) | 26832..29729 | - | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| LDO46_RS30880 (NUITMVR1_61050) | 29824..30429 | + | 606 | WP_000509966.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| LDO46_RS30885 | 30465..30533 | - | 69 | Protein_26 | IS6 family transposase | - |
| LDO46_RS30890 | 30979..31101 | + | 123 | Protein_27 | helix-turn-helix domain-containing protein | - |
| LDO46_RS30895 | 31204..32235 | + | 1032 | WP_001752311.1 | IS630 family transposase ISEc33 | Transposase |
| LDO46_RS30900 (NUITMVR1_61080) | 32257..33159 | + | 903 | Protein_29 | IS30 family transposase ISAba125 | Transposase |
| LDO46_RS30905 (NUITMVR1_61090) | 33260..34072 | + | 813 | WP_004201164.1 | Metallo-beta-lactamase type 2 | ARG |
| LDO46_RS30910 (NUITMVR1_61100) | 34076..34441 | + | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| LDO46_RS30915 (NUITMVR1_61110) | 34446..35084 | + | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| LDO46_RS30920 | 35095..35652 | - | 558 | Protein_33 | twin-arginine translocation (TAT) pathway signal sequence domain protein | - |
| LDO46_RS30925 | 35752..36126 | - | 375 | Protein_34 | protein-disulfide reductase DsbD family protein | - |
| LDO46_RS30930 (NUITMVR1_61130) | 36131..36460 | - | 330 | WP_004201171.1 | divalent-cation tolerance protein CutA | - |
| LDO46_RS30935 (NUITMVR1_61140) | 36654..36944 | + | 291 | WP_004201172.1 | co-chaperone GroES | - |
| LDO46_RS30940 (NUITMVR1_61150) | 37000..38640 | + | 1641 | WP_004201176.1 | 60 kDa chaperonin | VF |
| LDO46_RS30945 (NUITMVR1_61160) | 38865..40358 | + | 1494 | WP_043907034.1 | IS91 family transposase ISVsa3 | Transposase |
| LDO46_RS30950 (NUITMVR1_61170) | 40569..40748 | - | 180 | WP_224019191.1 | hypothetical protein | - |
| LDO46_RS30955 (NUITMVR1_61180) | 40824..41528 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LDO46_RS30960 (NUITMVR1_61190) | 41592..42848 | - | 1257 | Protein_41 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LDO46_RS30965 (NUITMVR1_61200) | 43012..43569 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| LDO46_RS30970 (NUITMVR1_61210) | 43752..44612 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| LDO46_RS30975 (NUITMVR1_61220) | 44782..45537 | + | 756 | WP_058683101.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| LDO46_RS30980 (NUITMVR1_61230) | 45618..46166 | - | 549 | WP_014342204.1 | cation:proton antiporter | - |
| LDO46_RS30985 (NUITMVR1_61240) | 46229..46579 | + | 351 | Protein_46 | 60 kDa chaperonin | VF |
| LDO46_RS30990 (NUITMVR1_61250) | 46854..48338 | + | 1485 | WP_015389030.1 | IS91 family transposase ISVsa3 | Transposase |
| LDO46_RS30995 (NUITMVR1_61260) | 48571..48963 | + | 393 | Protein_48 | mechanosensitive ion channel | - |
| LDO46_RS31000 (NUITMVR1_61270) | 48991..50526 | - | 1536 | WP_012372821.1 | Antiseptic resistance protein | ARG |
| LDO46_RS31005 (NUITMVR1_61280) | 50921..51601 | + | 681 | Protein_50 | IS91 family transposase ISAzo26 | Transposase |
| LDO46_RS31010 (NUITMVR1_61290) | 51666..52370 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LDO46_RS31015 (NUITMVR1_61300) | 52436..52873 | + | 438 | Protein_52 | Tn3 family transposase | - |
| LDO46_RS31020 (NUITMVR1_61320) | 52909..53324 | - | 416 | Protein_53 | IS1 family transposase IS1R | Transposase |
| LDO46_RS31025 (NUITMVR1_61330) | 53573..53974 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| LDO46_RS31030 (NUITMVR1_61340) | 53907..54164 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| LDO46_RS31035 (NUITMVR1_61350) | 54257..54910 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| LDO46_RS31040 (NUITMVR1_61360) | 55480..55815 | + | 336 | Protein_57 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| LDO46_RS31045 (NUITMVR1_61370) | 55952..56449 | - | 498 | WP_032446861.1 | hypothetical protein | - |
| LDO46_RS31050 (NUITMVR1_61380) | 56458..56880 | - | 423 | WP_032446862.1 | hypothetical protein | - |
| LDO46_RS31055 (NUITMVR1_61390) | 56903..57103 | - | 201 | Protein_60 | IS110 family transposase ISEc21 | Transposase |
| LDO46_RS31060 | 57385..58241 | - | 857 | Protein_61 | IS3 family transposase ISEc15 | Transposase |
| LDO46_RS31065 (NUITMVR1_61420) | 58445..58861 | - | 417 | WP_000754566.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LDO46_RS31070 (NUITMVR1_61430) | 58858..59088 | - | 231 | WP_001261276.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LDO46_RS31075 (NUITMVR1_61440) | 59662..60012 | + | 351 | WP_000493378.1 | hypothetical protein | - |
| LDO46_RS31080 (NUITMVR1_61450) | 60063..60806 | + | 744 | WP_000129823.1 | hypothetical protein | - |
| LDO46_RS31085 (NUITMVR1_61460) | 60803..61578 | + | 776 | Protein_66 | site-specific integrase | - |
| LDO46_RS31090 (NUITMVR1_61470) | 61636..61893 | - | 258 | WP_000764642.1 | hypothetical protein | - |
| LDO46_RS31095 | 62022..62126 | - | 105 | WP_032409716.1 | hypothetical protein | - |
| LDO46_RS31100 (NUITMVR1_61480) | 62656..63522 | + | 867 | WP_004118283.1 | replication initiation protein | - |
| LDO46_RS31105 (NUITMVR1_61490) | 63699..63968 | - | 270 | WP_000339857.1 | hypothetical protein | - |
| LDO46_RS31110 (NUITMVR1_61500) | 64383..65588 | + | 1206 | WP_000368714.1 | AAA family ATPase | - |
| LDO46_RS31115 (NUITMVR1_61510) | 65588..66409 | + | 822 | Protein_72 | ParB/RepB/Spo0J family partition protein | - |
| LDO46_RS31120 (NUITMVR1_61520) | 66484..67755 | - | 1272 | WP_224050219.1 | Y-family DNA polymerase | - |
| LDO46_RS31125 (NUITMVR1_61530) | 67755..68186 | - | 432 | WP_000776034.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LDO46_RS31130 (NUITMVR1_61550) | 68592..70079 | + | 1488 | Protein_75 | group II intron reverse transcriptase/maturase | - |
| LDO46_RS31135 | 70231..70928 | + | 698 | WP_224050220.1 | IS1 family transposase IS1X4 | Transposase |
| LDO46_RS31140 | 70938..71246 | + | 309 | Protein_77 | replication initiation protein | - |
| LDO46_RS31145 (NUITMVR1_61580) | 73160..74128 | + | 969 | WP_030005799.1 | IS5 family transposase IS903B | Transposase |
| LDO46_RS31150 (NUITMVR1_61590) | 74268..74654 | - | 387 | WP_001039464.1 | plasmid stabilization protein StbA | - |
| LDO46_RS31155 (NUITMVR1_61600) | 75236..75940 | + | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| LDO46_RS31160 (NUITMVR1_61610) | 75946..76086 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| LDO46_RS31165 (NUITMVR1_61620) | 76572..77309 | + | 738 | WP_001446887.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LDO46_RS31170 (NUITMVR1_61630) | 77306..77530 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| LDO46_RS31175 (NUITMVR1_61640) | 77741..79234 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| LDO46_RS31180 (NUITMVR1_61650) | 79470..79712 | - | 243 | Protein_85 | phosphoglucosamine mutase | - |
| LDO46_RS31185 (NUITMVR1_61660) | 79799..80614 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| LDO46_RS31190 | 80944..81030 | + | 87 | Protein_87 | Arm DNA-binding domain-containing protein | - |
| LDO46_RS31195 (NUITMVR1_61680) | 81302..82057 | - | 756 | Protein_88 | IS110 family transposase IS4321 | Transposase |
| LDO46_RS31200 (NUITMVR1_61690) | 82110..82814 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LDO46_RS31205 (NUITMVR1_61700) | 82992..83642 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| LDO46_RS31210 (NUITMVR1_61710) | 83748..84947 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| LDO46_RS31215 (NUITMVR1_61720) | 84979..85863 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| LDO46_RS31220 | 86001..86393 | - | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| LDO46_RS31225 (NUITMVR1_61740) | 86397..88148 | + | 1752 | Protein_94 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LDO46_RS31230 (NUITMVR1_61750) | 88115..88474 | + | 360 | Protein_95 | Phospholipase D | VF |
| LDO46_RS31235 (NUITMVR1_61760) | 88648..89274 | - | 627 | WP_000434930.1 | hypothetical protein | - |
| LDO46_RS31240 (NUITMVR1_61770) | 89274..92510 | - | 3237 | WP_058683159.1 | Multifunctional conjugation protein TraI | Relaxase |
| LDO46_RS31245 (NUITMVR1_61780) | 92510..94039 | - | 1530 | WP_000342688.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LDO46_RS31250 (NUITMVR1_61790) | 94041..94457 | - | 417 | WP_001532083.1 | hypothetical protein | - |
| LDO46_RS31255 (NUITMVR1_61800) | 94970..95389 | + | 420 | WP_000802909.1 | plasmid stabilization protein StbA | - |
| LDO46_RS31260 (NUITMVR1_61810) | 95398..96114 | + | 717 | WP_000861577.1 | StbB family protein | - |
| LDO46_RS31265 (NUITMVR1_61820) | 96116..96484 | + | 369 | WP_000414913.1 | plasmid stabilization protein StbC | - |
| LDO46_RS31270 (NUITMVR1_61830) | 96666..97010 | + | 345 | WP_000999874.1 | hypothetical protein | - |
| LDO46_RS31275 (NUITMVR1_61840) | 97121..97441 | - | 321 | WP_000211833.1 | protein CcgAII | - |
| LDO46_RS31280 (NUITMVR1_61850) | 97496..97675 | - | 180 | WP_000214483.1 | protein CcgAI | - |
| LDO46_RS31285 (NUITMVR1_61860) | 98333..98842 | - | 510 | WP_000129958.1 | antirestriction protein ArdA | - |
| LDO46_RS31290 (NUITMVR1_61870) | 99340..99624 | - | 285 | WP_000274934.1 | protein CcgC | - |
| LDO46_RS31295 (NUITMVR1_61880) | 99757..100053 | - | 297 | WP_000545925.1 | protein CcgD | - |
| LDO46_RS31300 (NUITMVR1_61890) | 100936..101175 | - | 240 | WP_047642100.1 | hypothetical protein | - |
| LDO46_RS31305 (NUITMVR1_61900) | 101185..101589 | - | 405 | WP_000881514.1 | antirestriction protein ArdAB regulator ArdR | - |
| LDO46_RS31310 (NUITMVR1_61910) | 101647..101946 | - | 300 | Protein_111 | antirestriction protein ArdB | - |
| LDO46_RS31315 (NUITMVR1_61920) | 102009..103496 | - | 1488 | WP_004178082.1 | group II intron reverse transcriptase/maturase | - |
| LDO46_RS31320 (NUITMVR1_61930) | 103894..104334 | + | 441 | WP_000861760.1 | translesion error-prone DNA polymerase V autoproteolytic subunit MucA | - |
| LDO46_RS31325 (NUITMVR1_61940) | 104322..105587 | + | 1266 | WP_000457702.1 | translesion error-prone DNA polymerase V subunit MucB | - |
| LDO46_RS31330 (NUITMVR1_61950) | 105738..106529 | + | 792 | WP_047642102.1 | SprT-like domain-containing protein | - |
| LDO46_RS31335 (NUITMVR1_61960) | 106544..106885 | - | 342 | WP_000057569.1 | antirestriction protein ArdAB regulator ArdK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|