MGE detailed information
MGE type: Conjugative plasmid MGE length: 139908 bp
Accession: NZ_AP025012 Location: 1..139908 Organism: Raoultella ornithinolytica strain NUITM-VR1 Replicon: plasmid pNUITM-VR1_3
Accession: NZ_AP025012 Location: 1..139908 Organism: Raoultella ornithinolytica strain NUITM-VR1 Replicon: plasmid pNUITM-VR1_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO46_RS30050 | 484..561 | + | 78 | WP_014386216.1 | RepA leader peptide Tap | - |
| LDO46_RS30055 (NUITMVR1_59330) | 554..1411 | + | 858 | WP_004099067.1 | incFII family plasmid replication initiator RepA | - |
| LDO46_RS30060 | 2348..2431 | + | 84 | Protein_3 | SOS response-associated peptidase | - |
| LDO46_RS30065 | 2489..2560 | - | 72 | Protein_4 | hypothetical protein | - |
| LDO46_RS30070 (NUITMVR1_59340) | 2594..5248 | - | 2655 | Protein_5 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| LDO46_RS30075 (NUITMVR1_59350) | 5334..6623 | + | 1290 | WP_034039555.1 | site-specific integrase | - |
| LDO46_RS30080 (NUITMVR1_59360) | 6616..8346 | + | 1731 | WP_034039553.1 | site-specific integrase | - |
| LDO46_RS30085 (NUITMVR1_59370) | 8343..10382 | + | 2040 | WP_034039551.1 | hypothetical protein | - |
| LDO46_RS30090 (NUITMVR1_59380) | 10363..10827 | + | 465 | WP_023443007.1 | hypothetical protein | - |
| LDO46_RS30095 (NUITMVR1_59390) | 10895..13585 | - | 2691 | WP_058131653.1 | AAA family ATPase | - |
| LDO46_RS30100 (NUITMVR1_59400) | 14026..14583 | - | 558 | WP_224050192.1 | transcriptional regulator | - |
| LDO46_RS30105 (NUITMVR1_59410) | 14763..15926 | + | 1164 | WP_088903431.1 | Multidrug efflux pump subunit AcrA | VF |
| LDO46_RS30110 (NUITMVR1_59420) | 15942..19076 | + | 3135 | WP_224050191.1 | Multidrug resistance protein MexB | VF |
| LDO46_RS30115 (NUITMVR1_59430) | 19081..20514 | + | 1434 | WP_003152694.1 | Outer membrane protein OprJ | VF |
| LDO46_RS30120 (NUITMVR1_59440) | 20863..21174 | - | 312 | WP_181713201.1 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| LDO46_RS30125 (NUITMVR1_59450) | 21300..21914 | + | 615 | WP_000904906.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LDO46_RS30130 | 21980..22783 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| LDO46_RS30135 (NUITMVR1_59480) | 22783..23619 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| LDO46_RS30140 (NUITMVR1_59490) | 23837..24541 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LDO46_RS30145 (NUITMVR1_59500) | 24594..25019 | - | 426 | Protein_20 | IS5 family transposase ISKpn26 | Transposase |
| LDO46_RS30150 (NUITMVR1_59510) | 25299..25844 | + | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| LDO46_RS30155 (NUITMVR1_59520) | 25981..26553 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| LDO46_RS30160 (NUITMVR1_59530) | 26590..27981 | + | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| LDO46_RS30165 (NUITMVR1_59540) | 28014..28442 | + | 429 | Protein_24 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LDO46_RS30170 (NUITMVR1_59550) | 28761..29417 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| LDO46_RS30175 | 29812..30944 | + | 1133 | Protein_26 | IS3 family transposase ISAs17 | Transposase |
| LDO46_RS30180 (NUITMVR1_59580) | 31000..31638 | - | 639 | Protein_27 | IS6 family transposase IS15DI | Transposase |
| LDO46_RS30185 (NUITMVR1_59590) | 31672..34569 | - | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| LDO46_RS30190 (NUITMVR1_59600) | 34664..35269 | + | 606 | WP_000509966.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| LDO46_RS30195 | 35305..35373 | - | 69 | Protein_30 | IS6 family transposase | - |
| LDO46_RS30200 | 35819..35941 | + | 123 | Protein_31 | helix-turn-helix domain-containing protein | - |
| LDO46_RS30205 | 36044..37075 | + | 1032 | WP_001752311.1 | IS630 family transposase ISEc33 | Transposase |
| LDO46_RS30210 (NUITMVR1_59630) | 37097..37999 | + | 903 | Protein_33 | IS30 family transposase ISAba125 | Transposase |
| LDO46_RS30215 (NUITMVR1_59640) | 38100..38912 | + | 813 | WP_004201164.1 | Metallo-beta-lactamase type 2 | ARG |
| LDO46_RS30220 (NUITMVR1_59650) | 38916..39281 | + | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| LDO46_RS30225 (NUITMVR1_59660) | 39286..39924 | + | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| LDO46_RS30230 | 39935..40492 | - | 558 | Protein_37 | twin-arginine translocation (TAT) pathway signal sequence domain protein | - |
| LDO46_RS30235 | 40592..40966 | - | 375 | Protein_38 | protein-disulfide reductase DsbD family protein | - |
| LDO46_RS30240 (NUITMVR1_59680) | 40971..41300 | - | 330 | WP_004201171.1 | divalent-cation tolerance protein CutA | - |
| LDO46_RS30245 (NUITMVR1_59690) | 41494..41784 | + | 291 | WP_004201172.1 | co-chaperone GroES | - |
| LDO46_RS30250 (NUITMVR1_59700) | 41840..43480 | + | 1641 | WP_004201176.1 | 60 kDa chaperonin | VF |
| LDO46_RS30255 (NUITMVR1_59710) | 43705..45198 | + | 1494 | WP_043907034.1 | IS91 family transposase ISVsa3 | Transposase |
| LDO46_RS30260 (NUITMVR1_59720) | 45409..45588 | - | 180 | WP_224019191.1 | hypothetical protein | - |
| LDO46_RS30265 (NUITMVR1_59730) | 45664..46368 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LDO46_RS30270 (NUITMVR1_59740) | 46436..49201 | + | 2766 | Protein_45 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LDO46_RS30275 (NUITMVR1_59750) | 49512..49862 | + | 351 | WP_167878626.1 | hypothetical protein | - |
| LDO46_RS30280 (NUITMVR1_59760) | 50095..50589 | - | 495 | WP_001568016.1 | hypothetical protein | - |
| LDO46_RS30285 (NUITMVR1_59770) | 50620..51192 | - | 573 | WP_001568017.1 | hypothetical protein | - |
| LDO46_RS30290 (NUITMVR1_59780) | 51189..51437 | - | 249 | WP_001568018.1 | hypothetical protein | - |
| LDO46_RS30295 (NUITMVR1_59790) | 51883..53610 | + | 1728 | WP_001568019.1 | ATP-binding protein | - |
| LDO46_RS30300 | 53607..55022 | + | 1416 | WP_001568020.1 | AAA family ATPase | - |
| LDO46_RS30305 (NUITMVR1_59810) | 55622..58426 | + | 2805 | WP_224050218.1 | hypothetical protein | - |
| LDO46_RS30310 (NUITMVR1_59820) | 58571..59599 | - | 1029 | WP_001568023.1 | Abi family protein | - |
| LDO46_RS30315 (NUITMVR1_59830) | 59740..60309 | - | 570 | WP_016162066.1 | hypothetical protein | - |
| LDO46_RS30320 (NUITMVR1_59850) | 60889..61107 | + | 219 | WP_001568025.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| LDO46_RS30325 (NUITMVR1_59860) | 61109..61414 | + | 306 | WP_025714517.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LDO46_RS30330 (NUITMVR1_59870) | 61583..61978 | + | 396 | WP_017899885.1 | hypothetical protein | - |
| LDO46_RS30335 (NUITMVR1_59880) | 62005..62319 | + | 315 | WP_053389906.1 | hypothetical protein | - |
| LDO46_RS30340 (NUITMVR1_59890) | 62330..63346 | + | 1017 | WP_017899884.1 | hypothetical protein | - |
| LDO46_RS30345 (NUITMVR1_59900) | 63544..64338 | + | 795 | WP_004197635.1 | site-specific integrase | - |
| LDO46_RS30350 (NUITMVR1_59920) | 64802..65104 | - | 303 | WP_071571079.1 | hypothetical protein | - |
| LDO46_RS30355 (NUITMVR1_59930) | 65101..65727 | - | 627 | WP_004197649.1 | Chromosome-partitioning ATPase Soj | VF |
| LDO46_RS30360 (NUITMVR1_59940) | 66384..67259 | - | 876 | WP_004098982.1 | replication initiation protein | - |
| LDO46_RS30365 (NUITMVR1_59950) | 67671..68942 | - | 1272 | WP_004197646.1 | Y-family DNA polymerase | - |
| LDO46_RS30370 (NUITMVR1_59960) | 68942..69373 | - | 432 | WP_001568036.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LDO46_RS30375 (NUITMVR1_59970) | 69607..70577 | + | 971 | Protein_66 | plasmid segregation protein ParM | - |
| LDO46_RS30380 (NUITMVR1_59980) | 70580..71251 | + | 672 | WP_001568039.1 | plasmid partitioning/stability family protein | - |
| LDO46_RS30385 (NUITMVR1_59990) | 71314..71544 | + | 231 | WP_001568040.1 | hypothetical protein | - |
| LDO46_RS30390 | 71740..71909 | + | 170 | Protein_69 | hypothetical protein | - |
| LDO46_RS30395 (NUITMVR1_60000) | 71981..72682 | + | 702 | WP_001568041.1 | DNA methylase | - |
| LDO46_RS30400 (NUITMVR1_60010) | 72682..72903 | + | 222 | WP_001568042.1 | hypothetical protein | - |
| LDO46_RS30405 (NUITMVR1_60020) | 72913..73332 | + | 420 | WP_001568043.1 | DUF1380 domain-containing protein | - |
| LDO46_RS30410 (NUITMVR1_60030) | 73386..74153 | + | 768 | WP_001568044.1 | hypothetical protein | - |
| LDO46_RS30415 (NUITMVR1_60040) | 74834..75262 | + | 429 | WP_001568045.1 | antirestriction protein | - |
| LDO46_RS30420 (NUITMVR1_60050) | 75305..75811 | + | 507 | WP_055316506.1 | antirestriction protein ArdA | - |
| LDO46_RS30425 (NUITMVR1_60060) | 75854..76045 | + | 192 | WP_001568047.1 | hypothetical protein | - |
| LDO46_RS30430 (NUITMVR1_60070) | 76230..76484 | + | 255 | WP_224050216.1 | DNA polymerase III subunit theta | - |
| LDO46_RS30435 (NUITMVR1_60080) | 76519..76839 | + | 321 | WP_001568049.1 | hypothetical protein | - |
| LDO46_RS30440 (NUITMVR1_60090) | 77519..77746 | + | 228 | WP_001568050.1 | hypothetical protein | - |
| LDO46_RS30445 (NUITMVR1_60100) | 77838..78068 | + | 231 | WP_001568051.1 | hypothetical protein | - |
| LDO46_RS30450 (NUITMVR1_60110) | 78120..79475 | + | 1356 | WP_095849300.1 | DUF3560 domain-containing protein | - |
| LDO46_RS30455 (NUITMVR1_60120) | 79523..80089 | + | 567 | WP_001568053.1 | methyltransferase | - |
| LDO46_RS30460 (NUITMVR1_60150) | 80918..81460 | + | 543 | WP_001568054.1 | single-stranded DNA-binding protein | - |
| LDO46_RS30465 (NUITMVR1_60160) | 81509..81757 | + | 249 | WP_001568055.1 | DUF905 domain-containing protein | - |
| LDO46_RS30470 (NUITMVR1_60170) | 81827..83884 | + | 2058 | WP_048270286.1 | ParB/RepB/Spo0J family partition protein | - |
| LDO46_RS30475 (NUITMVR1_60180) | 83929..84360 | + | 432 | WP_048270287.1 | conjugation system SOS inhibitor PsiB | - |
| LDO46_RS30480 (NUITMVR1_60190) | 84357..85085 | + | 729 | WP_064180996.1 | plasmid SOS inhibition protein A | - |
| LDO46_RS30485 (NUITMVR1_60200) | 85082..85408 | + | 327 | WP_001568059.1 | hypothetical protein | - |
| LDO46_RS30490 (NUITMVR1_60210) | 85464..85838 | + | 375 | WP_001568060.1 | hypothetical protein | - |
| LDO46_RS30495 | 86042..87411 | + | 1370 | WP_085949440.1 | IS3 family transposase ISKpn8 | Transposase |
| LDO46_RS30500 | 87471..87644 | - | 174 | Protein_91 | IS481 family transposase | - |
| LDO46_RS30510 (NUITMVR1_60260) | 89075..89320 | + | 246 | WP_001568063.1 | helix-turn-helix transcriptional regulator | - |
| LDO46_RS30515 (NUITMVR1_60270) | 89307..92270 | + | 2964 | WP_001568064.1 | SNF2-related protein | - |
| LDO46_RS30520 (NUITMVR1_60280) | 92325..95465 | + | 3141 | WP_004197497.1 | DNA methyltransferase | - |
| LDO46_RS30525 (NUITMVR1_60290) | 95465..98827 | + | 3363 | WP_004197500.1 | DEAD/DEAH box helicase family protein | - |
| LDO46_RS30530 (NUITMVR1_60300) | 98983..99382 | + | 400 | Protein_97 | hypothetical protein | - |
| LDO46_RS30535 (NUITMVR1_60310) | 100198..101019 | + | 822 | WP_032454971.1 | DUF932 domain-containing protein | - |
| LDO46_RS30540 (NUITMVR1_60320) | 101052..101381 | + | 330 | WP_011977736.1 | DUF5983 family protein | - |
| LDO46_RS30545 (NUITMVR1_60330) | 101414..101899 | - | 486 | WP_001568108.1 | hypothetical protein | VF |
| LDO46_RS30550 (NUITMVR1_60340) | 102331..102714 | + | 384 | WP_224050217.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LDO46_RS30560 (NUITMVR1_60370) | 103890..104045 | + | 156 | Protein_103 | type IV conjugative transfer system pilin TraA | - |
| LDO46_RS30565 (NUITMVR1_60380) | 104059..104364 | + | 306 | WP_004178059.1 | type IV conjugative transfer system protein TraL | - |
| LDO46_RS30570 (NUITMVR1_60390) | 104384..104950 | + | 567 | WP_004144423.1 | type IV conjugative transfer system protein TraE | - |
| LDO46_RS30575 (NUITMVR1_60400) | 104937..105677 | + | 741 | WP_013214019.1 | type-F conjugative transfer system secretin TraK | - |
| LDO46_RS30580 (NUITMVR1_60410) | 105677..107101 | + | 1425 | WP_023284634.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LDO46_RS30585 (NUITMVR1_60420) | 107215..107799 | + | 585 | WP_032441881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LDO46_RS30590 (NUITMVR1_60430) | 107931..108341 | + | 411 | WP_004152499.1 | hypothetical protein | - |
| LDO46_RS30595 (NUITMVR1_60440) | 108447..108665 | + | 219 | WP_004195235.1 | hypothetical protein | - |
| LDO46_RS30600 (NUITMVR1_60450) | 108666..108977 | + | 312 | WP_004195240.1 | hypothetical protein | - |
| LDO46_RS30605 (NUITMVR1_60460) | 109044..109448 | + | 405 | WP_004197817.1 | hypothetical protein | - |
| LDO46_RS30610 (NUITMVR1_60470) | 109826..110224 | + | 399 | WP_074184101.1 | hypothetical protein | - |
| LDO46_RS30615 (NUITMVR1_60480) | 110296..112938 | + | 2643 | WP_032454974.1 | type IV secretion system protein TraC | - |
| LDO46_RS30620 (NUITMVR1_60490) | 112935..113324 | + | 390 | WP_004167468.1 | type-F conjugative transfer system protein TrbI | - |
| LDO46_RS30625 (NUITMVR1_60500) | 113324..113959 | + | 636 | WP_032441885.1 | type-F conjugative transfer system protein TraW | - |
| LDO46_RS30630 (NUITMVR1_60510) | 113994..114395 | + | 402 | WP_004194979.1 | hypothetical protein | - |
| LDO46_RS30635 (NUITMVR1_60520) | 114392..115381 | + | 990 | WP_057193347.1 | conjugal transfer pilus assembly protein TraU | - |
| LDO46_RS30640 (NUITMVR1_60530) | 115394..116032 | + | 639 | WP_004193871.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LDO46_RS30645 (NUITMVR1_60540) | 116091..118046 | + | 1956 | WP_055316764.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LDO46_RS30650 (NUITMVR1_60550) | 118078..118332 | + | 255 | WP_224050194.1 | conjugal transfer protein TrbE | - |
| LDO46_RS30655 (NUITMVR1_60560) | 118310..118558 | + | 249 | WP_004152675.1 | hypothetical protein | - |
| LDO46_RS30660 (NUITMVR1_60570) | 118571..118897 | + | 327 | WP_004144402.1 | hypothetical protein | - |
| LDO46_RS30665 (NUITMVR1_60580) | 118918..119670 | + | 753 | WP_004152677.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LDO46_RS30670 (NUITMVR1_60590) | 119681..119920 | + | 240 | WP_004144400.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LDO46_RS30675 (NUITMVR1_60600) | 119892..120449 | + | 558 | WP_055316562.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LDO46_RS30680 (NUITMVR1_60610) | 120495..120938 | + | 444 | WP_032454976.1 | F-type conjugal transfer protein TrbF | - |
| LDO46_RS30685 (NUITMVR1_60620) | 120916..122295 | + | 1380 | WP_074184099.1 | conjugal transfer pilus assembly protein TraH | - |
| LDO46_RS30690 (NUITMVR1_60630) | 122295..125144 | + | 2850 | WP_013609534.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LDO46_RS30695 (NUITMVR1_60640) | 125147..125680 | + | 534 | WP_014343486.1 | conjugal transfer protein TraS | - |
| LDO46_RS30700 (NUITMVR1_60650) | 125866..126597 | + | 732 | WP_013023830.1 | conjugal transfer complement resistance protein TraT | - |
| LDO46_RS30705 (NUITMVR1_60660) | 126790..127479 | + | 690 | WP_013023831.1 | hypothetical protein | - |
| LDO46_RS30710 (NUITMVR1_60670) | 127606..129918 | + | 2313 | WP_032454979.1 | type IV conjugative transfer system coupling protein TraD | - |
| LDO46_RS30715 (NUITMVR1_60680) | 129918..135179 | + | 5262 | WP_104443343.1 | Multifunctional conjugation protein TraI | Relaxase |
| LDO46_RS30720 (NUITMVR1_60690) | 135260..135985 | + | 726 | WP_013023834.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| LDO46_RS30725 (NUITMVR1_60700) | 136057..136650 | + | 594 | WP_055316667.1 | fertility inhibition protein FinO | - |
| LDO46_RS30730 (NUITMVR1_60710) | 136811..137413 | + | 603 | WP_013023836.1 | PIN domain-containing protein | - |
| LDO46_RS30735 (NUITMVR1_60720) | 137463..138107 | + | 645 | WP_004153014.1 | hypothetical protein | - |
| LDO46_RS30740 | 138163..138813 | + | 651 | WP_014343480.1 | DUF2726 domain-containing protein | - |
| LDO46_RS30745 (NUITMVR1_60740) | 138810..139118 | + | 309 | WP_004152383.1 | hypothetical protein | - |
| LDO46_RS30750 (NUITMVR1_60750) | 139222..139773 | + | 552 | WP_013609507.1 | Phospholipase D | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|