MGE detailed information
MGE type: Prophage MGE length: 56950 bp
Accession: NZ_AP025009 Location: 3301330..3358279 Organism: Raoultella ornithinolytica strain NUITM-VR1 Replicon: chromosome
Accession: NZ_AP025009 Location: 3301330..3358279 Organism: Raoultella ornithinolytica strain NUITM-VR1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO46_RS15505 (NUITMVR1_30600) | 3296822..3297625 | - | 804 | WP_162897450.1 | MBL fold metallo-hydrolase | - |
| LDO46_RS15510 (NUITMVR1_30610) | 3297999..3298166 | - | 168 | Protein_3045 | isocitrate/isopropylmalate family dehydrogenase | - |
| LDO46_RS15515 (NUITMVR1_30620) | 3298801..3299493 | - | 693 | WP_071359313.1 | EAL domain-containing protein | - |
| LDO46_RS15520 | 3299849..3300907 | - | 1059 | WP_224050039.1 | sensor domain-containing diguanylate cyclase | - |
| LDO46_RS15525 (NUITMVR1_30640) | 3301330..3302754 | - | 1425 | WP_071359312.1 | tail fiber domain-containing protein | - |
| LDO46_RS15530 (NUITMVR1_30650) | 3302823..3315527 | - | 12705 | WP_224050040.1 | DUF1983 domain-containing protein | - |
| LDO46_RS15535 (NUITMVR1_30660) | 3315590..3316201 | - | 612 | WP_014228919.1 | tail assembly protein | - |
| LDO46_RS15540 (NUITMVR1_30670) | 3316217..3316567 | - | 351 | WP_118860574.1 | hypothetical protein | - |
| LDO46_RS15545 (NUITMVR1_30680) | 3316599..3317309 | - | 711 | WP_071359310.1 | C40 family peptidase | - |
| LDO46_RS15550 (NUITMVR1_30690) | 3317311..3318066 | - | 756 | WP_014907809.1 | phage minor tail protein L | - |
| LDO46_RS15555 (NUITMVR1_30700) | 3318063..3318401 | - | 339 | WP_014228916.1 | phage tail protein | - |
| LDO46_RS15560 (NUITMVR1_30710) | 3318401..3321736 | - | 3336 | WP_071359923.1 | phage tail tape measure protein | - |
| LDO46_RS15565 (NUITMVR1_30720) | 3321969..3322334 | - | 366 | WP_014228914.1 | phage tail protein | - |
| LDO46_RS15570 (NUITMVR1_30730) | 3322392..3322853 | - | 462 | WP_014228913.1 | major tail shaft subunit | - |
| LDO46_RS15575 (NUITMVR1_30740) | 3322885..3323277 | - | 393 | WP_014228912.1 | HK97 gp10 family phage protein | - |
| LDO46_RS15580 (NUITMVR1_30750) | 3323283..3323672 | - | 390 | WP_014228911.1 | hypothetical protein | - |
| LDO46_RS15585 (NUITMVR1_30760) | 3323653..3323991 | - | 339 | WP_014228910.1 | head-tail adaptor protein | - |
| LDO46_RS15590 (NUITMVR1_30770) | 3323988..3324305 | - | 318 | WP_020317538.1 | head-tail connector protein | - |
| LDO46_RS15595 (NUITMVR1_30780) | 3324286..3324546 | - | 261 | WP_014228908.1 | hypothetical protein | - |
| LDO46_RS15600 (NUITMVR1_30790) | 3324605..3325891 | - | 1287 | WP_071359309.1 | phage major capsid protein | - |
| LDO46_RS15605 (NUITMVR1_30800) | 3325969..3326889 | - | 921 | WP_014907815.1 | S49 family peptidase | - |
| LDO46_RS15610 (NUITMVR1_30810) | 3326926..3328185 | - | 1260 | WP_023279520.1 | phage portal protein | - |
| LDO46_RS15615 (NUITMVR1_30820) | 3328185..3328364 | - | 180 | WP_020318187.1 | hypothetical protein | - |
| LDO46_RS15620 (NUITMVR1_30830) | 3328358..3330079 | - | 1722 | WP_118860573.1 | terminase large subunit | - |
| LDO46_RS15625 (NUITMVR1_30840) | 3330079..3330513 | - | 435 | WP_012542168.1 | phage terminase small subunit P27 family | - |
| LDO46_RS15630 (NUITMVR1_30850) | 3330763..3331194 | - | 432 | WP_081351910.1 | hypothetical protein | - |
| LDO46_RS15635 (NUITMVR1_30860) | 3331191..3331463 | - | 273 | WP_021462600.1 | hypothetical protein | - |
| LDO46_RS15640 (NUITMVR1_30870) | 3331460..3331822 | - | 363 | WP_014228901.1 | HNH endonuclease | - |
| LDO46_RS15645 (NUITMVR1_30880) | 3331806..3331967 | - | 162 | WP_023328098.1 | hypothetical protein | - |
| LDO46_RS15650 (NUITMVR1_30890) | 3332049..3332525 | - | 477 | WP_050583645.1 | DUF2514 domain-containing protein | - |
| LDO46_RS15655 (NUITMVR1_30900) | 3332558..3333088 | - | 531 | WP_023328100.1 | lysozyme | - |
| LDO46_RS15660 (NUITMVR1_30910) | 3333066..3333302 | - | 237 | WP_004111739.1 | class II holin family protein | - |
| LDO46_RS15665 (NUITMVR1_30920) | 3333458..3333865 | - | 408 | WP_012542176.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| LDO46_RS15670 (NUITMVR1_30930) | 3333913..3334089 | - | 177 | WP_012542177.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| LDO46_RS15675 (NUITMVR1_30940) | 3334454..3335599 | + | 1146 | WP_023328101.1 | nucleoid-associated protein | - |
| LDO46_RS15680 (NUITMVR1_30950) | 3335589..3336815 | + | 1227 | WP_023328102.1 | hypothetical protein | - |
| LDO46_RS15685 (NUITMVR1_30960) | 3336810..3337154 | - | 345 | WP_032435861.1 | antiterminator Q family protein | - |
| LDO46_RS15690 (NUITMVR1_30970) | 3337167..3338198 | - | 1032 | WP_071359307.1 | DUF968 domain-containing protein | - |
| LDO46_RS15695 (NUITMVR1_30980) | 3338398..3338790 | - | 393 | WP_025861428.1 | DNA-binding protein | - |
| LDO46_RS15700 (NUITMVR1_30990) | 3338831..3339088 | - | 258 | WP_223369409.1 | hypothetical protein | - |
| LDO46_RS15705 (NUITMVR1_31000) | 3339133..3339366 | - | 234 | WP_025368263.1 | DinI family protein | - |
| LDO46_RS15710 (NUITMVR1_31010) | 3339445..3340932 | - | 1488 | WP_004178082.1 | group II intron reverse transcriptase/maturase | - |
| LDO46_RS15720 (NUITMVR1_31020) | 3342384..3344186 | - | 1803 | WP_125041291.1 | ThiF family adenylyltransferase | - |
| LDO46_RS15725 (NUITMVR1_31030) | 3344183..3345328 | - | 1146 | WP_047666381.1 | hypothetical protein | - |
| LDO46_RS15730 (NUITMVR1_31040) | 3345334..3346833 | - | 1500 | WP_047666380.1 | SAVED domain-containing protein | - |
| LDO46_RS15735 (NUITMVR1_31050) | 3347497..3347937 | - | 441 | WP_032443841.1 | hypothetical protein | - |
| LDO46_RS15740 (NUITMVR1_31060) | 3347951..3348496 | - | 546 | WP_224050041.1 | replication protein P | - |
| LDO46_RS15745 (NUITMVR1_31070) | 3348408..3349391 | - | 984 | WP_071359304.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| LDO46_RS15750 (NUITMVR1_31080) | 3349443..3349997 | - | 555 | WP_014907826.1 | toxin YdaT family protein | - |
| LDO46_RS15755 (NUITMVR1_31090) | 3350000..3350215 | - | 216 | WP_012542199.1 | Cro/CI family transcriptional regulator | - |
| LDO46_RS15760 (NUITMVR1_31100) | 3350317..3350706 | + | 390 | WP_012542200.1 | helix-turn-helix domain-containing protein | - |
| LDO46_RS15765 (NUITMVR1_31110) | 3351053..3351367 | - | 315 | WP_040234937.1 | hypothetical protein | - |
| LDO46_RS15770 (NUITMVR1_31130) | 3351760..3351954 | + | 195 | WP_071359303.1 | DUF1482 family protein | - |
| LDO46_RS15775 (NUITMVR1_31140) | 3351997..3352341 | + | 345 | WP_014228879.1 | Rrf2 family transcriptional regulator | - |
| LDO46_RS15780 (NUITMVR1_31150) | 3352483..3354621 | + | 2139 | WP_071359302.1 | exonuclease | - |
| LDO46_RS15785 (NUITMVR1_31160) | 3354674..3354919 | + | 246 | WP_012542206.1 | excisionase | - |
| LDO46_RS15790 (NUITMVR1_31170) | 3354900..3356027 | + | 1128 | WP_023328117.1 | hypothetical protein ; Integrase | Integrase |
| LDO46_RS15795 (NUITMVR1_31180) | 3356145..3357395 | - | 1251 | WP_071359301.1 | NADP-dependent isocitrate dehydrogenase | - |
| LDO46_RS15800 (NUITMVR1_31190) | 3357629..3358279 | + | 651 | WP_015584629.1 | 23S rRNA pseudouridine(2457) synthase RluE | - |
| LDO46_RS15805 (NUITMVR1_31200) | 3358300..3358758 | + | 459 | WP_004860645.1 | NUDIX hydrolase | - |
| LDO46_RS15810 (NUITMVR1_31210) | 3358815..3359921 | + | 1107 | WP_015584630.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| LDO46_RS15815 (NUITMVR1_31220) | 3359981..3360622 | + | 642 | WP_004860640.1 | high frequency lysogenization protein HflD | - |
| LDO46_RS15820 (NUITMVR1_31230) | 3360626..3361996 | + | 1371 | WP_004860634.1 | adenylosuccinate lyase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|