MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 99051 bp
Accession: NZ_AP024520 Location: 1..99051 Organism: Escherichia coli strain E148 Replicon: plasmid pE148-2
Accession: NZ_AP024520 Location: 1..99051 Organism: Escherichia coli strain E148 Replicon: plasmid pE148-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDN98_RS24840 (NIAHE148_47520) | 705..1433 | + | 729 | WP_166465173.1 | phage tail protein | - |
| LDN98_RS24845 (NIAHE148_47530) | 1420..2205 | + | 786 | WP_000602717.1 | hypothetical protein | - |
| LDN98_RS24850 (NIAHE148_47540) | 2207..3223 | + | 1017 | WP_000212018.1 | hypothetical protein | - |
| LDN98_RS24855 (NIAHE148_47550) | 3216..3848 | + | 633 | WP_000535208.1 | hypothetical protein | - |
| LDN98_RS24860 (NIAHE148_47560) | 3894..4431 | - | 538 | Protein_5 | hypothetical protein | - |
| LDN98_RS24865 (NIAHE148_47570) | 4622..5557 | - | 936 | WP_157915289.1 | hypothetical protein | - |
| LDN98_RS24870 (NIAHE148_47580) | 6643..9930 | - | 3288 | WP_137455895.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| LDN98_RS24875 (NIAHE148_47590) | 9927..10832 | - | 906 | WP_032332856.1 | recombination-associated protein RdgC | - |
| LDN98_RS24880 (NIAHE148_47600) | 10825..11109 | - | 285 | WP_001177860.1 | hypothetical protein | - |
| LDN98_RS24885 (NIAHE148_47620) | 11572..12360 | + | 789 | WP_166465172.1 | hypothetical protein | - |
| LDN98_RS24890 (NIAHE148_47630) | 12400..12822 | + | 423 | WP_000007769.1 | hypothetical protein | - |
| LDN98_RS24895 | 12848..12988 | + | 141 | WP_000336812.1 | hypothetical protein | - |
| LDN98_RS24900 (NIAHE148_47640) | 13000..13392 | + | 393 | WP_001281115.1 | hypothetical protein | - |
| LDN98_RS24905 (NIAHE148_47650) | 13728..14612 | + | 885 | WP_001113742.1 | RepB family plasmid replication initiator protein | - |
| LDN98_RS24910 (NIAHE148_47660) | 14905..15588 | + | 684 | WP_223951687.1 | GIY-YIG nuclease family protein | - |
| LDN98_RS24915 (NIAHE148_47670) | 15883..17079 | + | 1197 | WP_001285362.1 | AAA family ATPase | - |
| LDN98_RS24920 (NIAHE148_47680) | 17096..18097 | + | 1002 | WP_000038866.1 | ParB family protein | - |
| LDN98_RS24925 (NIAHE148_47690) | 18323..20029 | + | 1707 | WP_000067710.1 | hypothetical protein | - |
| LDN98_RS24930 (NIAHE148_47700) | 20090..21679 | + | 1590 | WP_061353993.1 | hypothetical protein | - |
| LDN98_RS24935 (NIAHE148_47710) | 21689..22504 | + | 816 | WP_000041756.1 | hypothetical protein | - |
| LDN98_RS24940 (NIAHE148_47720) | 22657..23121 | + | 465 | WP_001514460.1 | hypothetical protein | - |
| LDN98_RS24945 (NIAHE148_47730) | 23133..23642 | + | 510 | WP_000509939.1 | hypothetical protein | - |
| LDN98_RS24950 (NIAHE148_47760) | 24652..25356 | - | 705 | WP_015974255.1 | DUF3800 domain-containing protein | - |
| LDN98_RS24955 (NIAHE148_47770) | 25525..26370 | - | 846 | WP_166465171.1 | Replication protein repL | - |
| LDN98_RS24960 (NIAHE148_47780) | 26400..27200 | - | 801 | WP_001187878.1 | phage antirepressor KilAC domain-containing protein | - |
| LDN98_RS24965 (NIAHE148_47790) | 27365..28402 | - | 1038 | WP_166465170.1 | phage antirepressor KilAC domain-containing protein | - |
| LDN98_RS24970 | 28399..28620 | - | 222 | WP_000245711.1 | host cell division inhibitor Icd-like protein | - |
| LDN98_RS24975 (NIAHE148_47800) | 29241..29753 | + | 513 | WP_033550822.1 | membrane protein | - |
| LDN98_RS24980 (NIAHE148_47810) | 29765..30304 | + | 540 | WP_033550823.1 | DUF5384 family protein | - |
| LDN98_RS24985 (NIAHE148_47820) | 30622..31881 | + | 1260 | WP_166465169.1 | DUF559 domain-containing protein | - |
| LDN98_RS24990 (NIAHE148_47830) | 32012..32578 | + | 567 | WP_023155386.1 | hypothetical protein | - |
| LDN98_RS24995 (NIAHE148_47840) | 32589..33200 | + | 612 | WP_000523980.1 | hypothetical protein | - |
| LDN98_RS25000 (NIAHE148_47850) | 33215..34096 | + | 882 | WP_000926346.1 | hypothetical protein | - |
| LDN98_RS25005 (NIAHE148_47860) | 34178..37600 | + | 3423 | WP_166465168.1 | transglycosylase SLT domain-containing protein | - |
| LDN98_RS25010 (NIAHE148_47870) | 37600..37956 | + | 357 | WP_000002800.1 | hypothetical protein | - |
| LDN98_RS25015 (NIAHE148_47880) | 37953..39386 | + | 1434 | WP_000047920.1 | bleomycin hydrolase | - |
| LDN98_RS25020 (NIAHE148_47890) | 39386..40222 | + | 837 | WP_001189838.1 | hypothetical protein | - |
| LDN98_RS25025 (NIAHE148_47900) | 40301..40735 | + | 435 | WP_166465167.1 | phage tail protein | - |
| LDN98_RS25030 | 41239..41451 | + | 213 | Protein_39 | phage tail protein | - |
| LDN98_RS25035 | 42493..42690 | + | 198 | Protein_40 | phage tail protein | - |
| LDN98_RS25040 (NIAHE148_47920) | 44215..44760 | + | 546 | WP_166429567.1 | tail fiber assembly protein | - |
| LDN98_RS25045 (NIAHE148_47930) | 44795..45307 | - | 513 | WP_223951689.1 | tail fiber assembly protein | - |
| LDN98_RS25055 (NIAHE148_47940) | 45577..46590 | - | 1014 | WP_166465166.1 | fimbrial protein | - |
| LDN98_RS25060 (NIAHE148_47950) | 46602..49088 | - | 2487 | WP_105906954.1 | Outer membrane usher protein YehB | VF |
| LDN98_RS25065 (NIAHE148_47960) | 49103..49783 | - | 681 | WP_025670919.1 | putative fimbrial chaperone YehC | VF |
| LDN98_RS25070 (NIAHE148_47970) | 49837..50385 | - | 549 | WP_166465165.1 | fimbrial protein YehD | - |
| LDN98_RS25080 (NIAHE148_48000) | 51689..52018 | + | 330 | WP_000887652.1 | phage holin family protein | - |
| LDN98_RS25085 (NIAHE148_48010) | 52015..52458 | + | 444 | WP_000580776.1 | hypothetical protein | - |
| LDN98_RS25090 (NIAHE148_48020) | 52445..53047 | + | 603 | WP_166429571.1 | odaE | - |
| LDN98_RS25095 (NIAHE148_48030) | 53049..54968 | + | 1920 | WP_166429572.1 | hypothetical protein | - |
| LDN98_RS25100 (NIAHE148_48040) | 54965..55330 | + | 366 | WP_166429573.1 | ddrA | - |
| LDN98_RS25105 (NIAHE148_48050) | 55385..57031 | + | 1647 | Protein_53 | hypothetical protein | - |
| LDN98_RS25110 (NIAHE148_48060) | 57021..57332 | + | 312 | WP_001165933.1 | hypothetical protein | - |
| LDN98_RS25115 (NIAHE148_48070) | 57361..58155 | - | 795 | WP_166429574.1 | hypothetical protein | - |
| LDN98_RS25120 (NIAHE148_48080) | 58353..58841 | - | 489 | WP_166429575.1 | single-stranded DNA-binding protein | - |
| LDN98_RS25125 (NIAHE148_48090) | 59011..59568 | + | 558 | WP_064669545.1 | lysozyme | - |
| LDN98_RS25130 (NIAHE148_48100) | 59948..61162 | + | 1215 | WP_166465194.1 | IS200-IS605 family transposase IS609 | Transposase |
| LDN98_RS25135 (NIAHE148_48110) | 61196..62215 | - | 1020 | WP_166465193.1 | head processing protein | - |
| LDN98_RS25140 (NIAHE148_48120) | 62208..63917 | - | 1710 | WP_166465192.1 | phage portal protein | - |
| LDN98_RS25145 (NIAHE148_48130) | 63993..70760 | + | 6768 | WP_166465191.1 | N-6 DNA methylase | - |
| LDN98_RS25150 (NIAHE148_48140) | 70794..71234 | + | 441 | WP_000224043.1 | hypothetical protein | - |
| LDN98_RS25155 (NIAHE148_48150) | 71231..71479 | + | 249 | WP_000747846.1 | hypothetical protein | - |
| LDN98_RS25160 (NIAHE148_48160) | 71516..72466 | - | 951 | WP_223951685.1 | GTP pyrophosphokinase | - |
| LDN98_RS25165 (NIAHE148_48170) | 72524..73504 | - | 981 | WP_000019449.1 | IS5 family transposase ISKpn26 | Transposase |
| LDN98_RS25170 (NIAHE148_48180) | 73574..73843 | - | 270 | Protein_66 | GTP pyrophosphokinase | - |
| LDN98_RS25175 (NIAHE148_48190) | 73946..74587 | - | 642 | WP_072017498.1 | maturation control protein | - |
| LDN98_RS25180 (NIAHE148_48200) | 74776..75336 | - | 561 | WP_166465179.1 | Ref family protein | - |
| LDN98_RS25185 (NIAHE148_48210) | 75584..75895 | - | 312 | WP_001224235.1 | hypothetical protein | - |
| LDN98_RS25190 (NIAHE148_48220) | 75946..76977 | - | 1032 | WP_166465178.1 | site-specific integrase | - |
| LDN98_RS25195 (NIAHE148_48230) | 76985..77206 | - | 222 | WP_000542332.1 | hypothetical protein | - |
| LDN98_RS25200 (NIAHE148_48240) | 77811..78020 | + | 210 | WP_000874157.1 | hypothetical protein | - |
| LDN98_RS25205 (NIAHE148_48250) | 78131..78982 | + | 852 | WP_000611661.1 | phage repressor protein C1 | - |
| LDN98_RS25210 (NIAHE148_48260) | 79015..80130 | - | 1116 | WP_052908436.1 | phage antirepressor KilAC domain-containing protein | - |
| LDN98_RS25215 | 80127..80348 | - | 222 | WP_032162359.1 | host cell division inhibitor Icd-like protein | - |
| LDN98_RS25220 | 80367..80486 | - | 120 | WP_071527722.1 | ash family protein | - |
| LDN98_RS25225 (NIAHE148_48270) | 80708..82192 | - | 1485 | WP_000124159.1 | hypothetical protein | - |
| LDN98_RS25230 (NIAHE148_48280) | 82192..83385 | - | 1194 | WP_166465177.1 | terminase | - |
| LDN98_RS25235 (NIAHE148_48290) | 83471..83923 | - | 453 | WP_001326849.1 | late promoter-activating protein | - |
| LDN98_RS25240 (NIAHE148_48300) | 84012..85055 | - | 1044 | WP_001561086.1 | DUF968 domain-containing protein | - |
| LDN98_RS25245 (NIAHE148_48310) | 85083..85262 | - | 180 | WP_000113018.1 | hypothetical protein | - |
| LDN98_RS25250 (NIAHE148_48320) | 85267..85647 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| LDN98_RS25255 (NIAHE148_48330) | 85647..85868 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LDN98_RS25260 (NIAHE148_48340) | 86051..87607 | + | 1557 | WP_166465176.1 | type I restriction-modification system subunit M | - |
| LDN98_RS25265 (NIAHE148_48350) | 87604..88806 | + | 1203 | WP_166465175.1 | restriction endonuclease subunit S | - |
| LDN98_RS25270 (NIAHE148_48360) | 88928..92044 | + | 3117 | WP_166465174.1 | HsdR family type I site-specific deoxyribonuclease | - |
| LDN98_RS25275 (NIAHE148_48370) | 92309..92815 | - | 507 | WP_137455894.1 | 3'-phosphatase | - |
| LDN98_RS25280 (NIAHE148_48380) | 92889..94151 | - | 1263 | WP_000107690.1 | hypothetical protein | - |
| LDN98_RS25285 (NIAHE148_48400) | 94453..95154 | - | 702 | WP_000684868.1 | hypothetical protein | - |
| LDN98_RS25290 (NIAHE148_48410) | 95151..95828 | - | 678 | WP_106474605.1 | metallophosphoesterase | - |
| LDN98_RS25295 (NIAHE148_48420) | 95825..96361 | - | 537 | WP_171951827.1 | hypothetical protein | - |
| LDN98_RS25300 | 96349..96849 | - | 501 | WP_181013943.1 | hypothetical protein | - |
| LDN98_RS25305 (NIAHE148_48430) | 96953..97108 | - | 156 | WP_096989705.1 | hypothetical protein | - |
| LDN98_RS25310 (NIAHE148_48440) | 97175..97753 | - | 579 | WP_000943609.1 | VRR-NUC domain-containing protein | - |
| LDN98_RS25315 (NIAHE148_48450) | 97756..98001 | - | 246 | WP_000840931.1 | hypothetical protein | - |
| LDN98_RS25320 (NIAHE148_48460) | 98148..98525 | + | 378 | WP_000235786.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|