MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 35439 bp
Accession: NZ_AP023323 Location: 3486269..3521707 Organism: Sphingomonas paucimobilis strain Kira Replicon: chromosome
Accession: NZ_AP023323 Location: 3486269..3521707 Organism: Sphingomonas paucimobilis strain Kira Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPKIRA_RS16095 () | 3482143..3483036 | + | 894 | WP_182926478.1 | LysR family transcriptional regulator | - |
| SPKIRA_RS16100 () | 3483031..3483270 | - | 240 | WP_160987315.1 | DUF2274 domain-containing protein | - |
| SPKIRA_RS16105 () | 3483272..3484384 | - | 1113 | WP_197972034.1 | TrbI/VirB10 family protein | - |
| SPKIRA_RS16110 () | 3484453..3485433 | - | 981 | WP_182926482.1 | P-type conjugative transfer protein TrbG | - |
| SPKIRA_RS16115 () | 3485430..3486119 | - | 690 | WP_182926484.1 | conjugal transfer protein TrbF | - |
| SPKIRA_RS16120 () | 3486116..3487477 | - | 1362 | WP_182926486.1 | P-type conjugative transfer protein TrbL | - |
| SPKIRA_RS16125 () | 3487481..3487765 | - | 285 | WP_182926489.1 | putative entry exclusion protein TrbK-alt | - |
| SPKIRA_RS16130 () | 3487776..3488561 | - | 786 | WP_197972021.1 | P-type conjugative transfer protein TrbJ | - |
| SPKIRA_RS16135 () | 3488561..3491011 | - | 2451 | WP_182926493.1 | conjugal transfer protein TrbE | - |
| SPKIRA_RS16140 () | 3491026..3491307 | - | 282 | WP_047821004.1 | VirB3 family type IV secretion system protein | - |
| SPKIRA_RS16145 () | 3491307..3491624 | - | 318 | WP_197972022.1 | TrbC/VirB2 family protein | - |
| SPKIRA_RS16150 () | 3491639..3492622 | - | 984 | WP_047821002.1 | P-type conjugative transfer ATPase TrbB | - |
| SPKIRA_RS16155 () | 3492791..3493240 | - | 450 | WP_047821001.1 | hypothetical protein | - |
| SPKIRA_RS16160 () | 3493245..3495236 | - | 1992 | WP_182926495.1 | conjugal transfer protein TraG | - |
| SPKIRA_RS16165 () | 3495263..3497002 | - | 1740 | WP_182926497.1 | VirD2 family relaxase/mobilization nuclease | - |
| SPKIRA_RS16170 () | 3497246..3498004 | - | 759 | WP_197972035.1 | lytic transglycosylase domain-containing protein | - |
| SPKIRA_RS16175 () | 3498029..3498376 | - | 348 | WP_045811420.1 | DUF736 domain-containing protein | - |
| SPKIRA_RS16180 () | 3498445..3498963 | - | 519 | WP_197972036.1 | S26 family signal peptidase | - |
| SPKIRA_RS16185 () | 3498987..3499508 | - | 522 | WP_182926503.1 | DUF2840 domain-containing protein | - |
| SPKIRA_RS16190 () | 3499505..3499756 | - | 252 | WP_066967660.1 | hypothetical protein | - |
| SPKIRA_RS16195 () | 3499753..3500406 | - | 654 | WP_182926507.1 | AAA family ATPase | - |
| SPKIRA_RS16200 () | 3500403..3501563 | - | 1161 | WP_182926509.1 | replication initiator protein A | - |
| SPKIRA_RS16205 () | 3501582..3501863 | - | 282 | WP_012110094.1 | helix-turn-helix domain-containing protein | - |
| SPKIRA_RS16210 () | 3502000..3502629 | - | 630 | WP_197972023.1 | DUF2285 domain-containing protein | - |
| SPKIRA_RS16215 () | 3502892..3503194 | - | 303 | WP_182926511.1 | DUF2285 domain-containing protein | - |
| SPKIRA_RS16220 () | 3503249..3503515 | - | 267 | WP_045811379.1 | helix-turn-helix transcriptional regulator | - |
| SPKIRA_RS16225 () | 3503822..3504148 | - | 327 | WP_041535876.1 | DUF736 domain-containing protein | - |
| SPKIRA_RS16230 () | 3504722..3505162 | - | 441 | WP_182926513.1 | hypothetical protein | - |
| SPKIRA_RS16235 () | 3505300..3505464 | - | 165 | WP_182926515.1 | hypothetical protein | - |
| SPKIRA_RS16240 () | 3505746..3506168 | - | 423 | WP_160987300.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| SPKIRA_RS16245 () | 3506165..3506419 | - | 255 | WP_012110103.1 | plasmid stabilization protein | Antitoxin Detail |
| SPKIRA_RS16250 () | 3506505..3507431 | - | 927 | WP_047820987.1 | DUF2493 domain-containing protein | - |
| SPKIRA_RS16255 () | 3507781..3508815 | - | 1035 | WP_182926517.1 | toprim domain-containing protein | - |
| SPKIRA_RS16260 () | 3508815..3510659 | - | 1845 | WP_182926519.1 | strawberry notch C-terminal domain-containing protein | - |
| SPKIRA_RS16265 () | 3510716..3512263 | + | 1548 | WP_011540750.1 | tyrosine-type recombinase/integrase | - |
| SPKIRA_RS16270 () | 3512257..3513166 | + | 910 | Protein_3196 | tyrosine-type recombinase/integrase | - |
| SPKIRA_RS16275 () | 3513163..3514167 | + | 1005 | WP_024310637.1 | tyrosine-type recombinase/integrase | - |
| SPKIRA_RS16280 () | 3514306..3516855 | - | 2550 | WP_197972024.1 | strawberry notch family protein | - |
| SPKIRA_RS16285 () | 3517016..3517312 | - | 297 | WP_182926521.1 | hypothetical protein | - |
| SPKIRA_RS16290 () | 3517309..3517575 | - | 267 | WP_182926522.1 | hypothetical protein | - |
| SPKIRA_RS16295 () | 3517572..3517988 | - | 417 | WP_182926524.1 | hypothetical protein | - |
| SPKIRA_RS16300 () | 3518120..3520240 | - | 2121 | WP_182926526.1 | ParB/RepB/Spo0J family partition protein | - |
| SPKIRA_RS16305 () | 3520402..3520548 | - | 147 | Protein_3203 | antirestriction protein ArdC | - |
| SPKIRA_RS16310 () | 3520690..3521920 | + | 1231 | Protein_3204 | tyrosine-type recombinase/integrase | - |
| SPKIRA_RS16315 () | 3521960..3523279 | + | 1320 | WP_197972025.1 | tyrosine-type recombinase/integrase | - |
| SPKIRA_RS16320 () | 3523276..3524280 | + | 1005 | WP_182926528.1 | site-specific integrase | - |
| SPKIRA_RS16325 () | 3524340..3525212 | - | 873 | WP_197972026.1 | DUF1738 domain-containing protein | - |
| SPKIRA_RS16330 () | 3525451..3526044 | + | 594 | WP_047820979.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|