MGE detailed information
MGE type: Conjugative plasmid MGE length: 161351 bp
Accession: NZ_AP023271 Location: 1..161351 Organism: Agrobacterium vitis strain VAR03-1 Replicon: plasmid pRvVAR031b
Accession: NZ_AP023271 Location: 1..161351 Organism: Agrobacterium vitis strain VAR03-1 Replicon: plasmid pRvVAR031b
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RvVAT039_RS24065 () | 984..1979 | - | 996 | WP_180642225.1 | plasmid partitioning protein RepB | - |
| RvVAT039_RS24070 () | 2064..3254 | - | 1191 | WP_180642227.1 | Sporulation initiation inhibitor protein Soj | VF |
| RvVAT039_RS24075 () | 3632..4267 | + | 636 | WP_180642228.1 | Acyl-homoserine-lactone synthase | VF |
| RvVAT039_RS24080 () | 4264..5235 | + | 972 | WP_180642230.1 | Type IV secretion system protein VirB11 | VF |
| RvVAT039_RS24085 () | 5225..5629 | + | 405 | WP_180642232.1 | conjugal transfer pilin TrbC | - |
| RvVAT039_RS24090 () | 5622..5921 | + | 300 | WP_020046779.1 | conjugal transfer protein TrbD | - |
| RvVAT039_RS24095 () | 5931..8399 | + | 2469 | WP_180642233.1 | conjugal transfer protein TrbE | - |
| RvVAT039_RS24100 () | 8371..9180 | + | 810 | WP_180642235.1 | P-type conjugative transfer protein TrbJ | - |
| RvVAT039_RS24105 () | 9177..9404 | + | 228 | WP_180642237.1 | entry exclusion protein TrbK | - |
| RvVAT039_RS24110 () | 9398..10585 | + | 1188 | WP_180642239.1 | P-type conjugative transfer protein TrbL | - |
| RvVAT039_RS24115 () | 10603..11280 | + | 678 | WP_180642241.1 | conjugal transfer protein TrbF | - |
| RvVAT039_RS24120 () | 11298..12149 | + | 852 | WP_180642243.1 | hypothetical protein | VF |
| RvVAT039_RS24125 () | 12149..12625 | + | 477 | WP_180642245.1 | conjugal transfer protein TrbH | - |
| RvVAT039_RS24130 () | 12637..13956 | + | 1320 | WP_180642248.1 | Type IV secretion system protein PtlG | VF |
| RvVAT039_RS24135 () | 14093..14995 | - | 903 | WP_156551308.1 | LysR family transcriptional regulator | - |
| RvVAT039_RS24140 () | 15248..16021 | + | 774 | WP_156551382.1 | Octopine permease ATP-binding protein P | VF |
| RvVAT039_RS24145 () | 16087..16938 | + | 852 | WP_156551309.1 | nopaline ABC transporter substrate-binding protein NocT | - |
| RvVAT039_RS24150 () | 17011..17721 | + | 711 | WP_045025159.1 | nopaline ABC transporter permease NocQ | - |
| RvVAT039_RS24155 () | 17723..18448 | + | 726 | WP_080868320.1 | nopaline ABC transporter permease NocM | - |
| RvVAT039_RS24160 () | 18561..19481 | + | 921 | WP_156551310.1 | LysR family transcriptional regulator | - |
| RvVAT039_RS24165 () | 19600..21555 | - | 1956 | WP_180642251.1 | hydantoinase B/oxoprolinase family protein | - |
| RvVAT039_RS24170 () | 21559..23595 | - | 2037 | WP_180642253.1 | hydantoinase/oxoprolinase family protein | - |
| RvVAT039_RS24175 () | 24207..25325 | + | 1119 | WP_180642255.1 | FAD-binding oxidoreductase | - |
| RvVAT039_RS24180 () | 25322..25615 | + | 294 | WP_003523884.1 | (2Fe-2S)-binding protein | - |
| RvVAT039_RS24185 () | 25612..27030 | + | 1419 | WP_180642258.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| RvVAT039_RS24190 () | 27078..28034 | + | 957 | WP_180642260.1 | arginase | - |
| RvVAT039_RS24195 () | 28111..29193 | + | 1083 | WP_180642263.1 | NAD/NADP octopine/nopaline dehydrogenase family protein | - |
| RvVAT039_RS24200 () | 29241..30302 | + | 1062 | WP_156551317.1 | ornithine cyclodeaminase | - |
| RvVAT039_RS24205 () | 30322..31626 | + | 1305 | WP_180642265.1 | DUF3422 domain-containing protein | - |
| RvVAT039_RS24210 () | 31923..32627 | + | 705 | WP_156551319.1 | transcriptional regulator TraR | - |
| RvVAT039_RS24215 () | 32903..33211 | - | 309 | WP_180642267.1 | transcriptional repressor TraM | - |
| RvVAT039_RS24220 () | 33590..33760 | + | 171 | WP_180642269.1 | hypothetical protein | - |
| RvVAT039_RS24225 () | 33816..34070 | + | 255 | WP_156551322.1 | antitoxin | - |
| RvVAT039_RS24230 () | 34067..34390 | + | 324 | WP_156551323.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| RvVAT039_RS24235 () | 34406..35038 | - | 633 | WP_180642271.1 | conjugal transfer protein TraH | - |
| RvVAT039_RS24240 () | 35052..36317 | - | 1266 | WP_180642274.1 | conjugal transfer protein TraB | - |
| RvVAT039_RS24245 () | 36238..36765 | - | 528 | WP_180642276.1 | conjugative transfer signal peptidase TraF | - |
| RvVAT039_RS24250 () | 36762..40064 | - | 3303 | WP_180642278.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| RvVAT039_RS24255 () | 40347..40643 | + | 297 | WP_071207903.1 | TraC family protein | - |
| RvVAT039_RS24260 () | 40648..40863 | + | 216 | WP_071207757.1 | type IV conjugative transfer system coupling protein TraD | - |
| RvVAT039_RS24265 () | 40850..42820 | + | 1971 | WP_071207755.1 | Conjugal transfer protein TraG | VF |
| RvVAT039_RS24270 () | 42817..43269 | + | 453 | WP_071207753.1 | thermonuclease family protein | - |
| RvVAT039_RS24275 () | 43366..43632 | + | 267 | WP_071207751.1 | WGR domain-containing protein | - |
| RvVAT039_RS24280 () | 43716..43994 | + | 279 | WP_012648969.1 | HU family DNA-binding protein | - |
| RvVAT039_RS24285 () | 44038..44349 | - | 312 | WP_071207749.1 | DUF736 domain-containing protein | - |
| RvVAT039_RS24290 () | 44480..44626 | + | 147 | WP_156753210.1 | hypothetical protein | - |
| RvVAT039_RS24295 () | 44962..45906 | - | 945 | WP_071207745.1 | dienelactone hydrolase | - |
| RvVAT039_RS24300 () | 45945..46703 | - | 759 | WP_180642280.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| RvVAT039_RS24305 () | 46802..47701 | + | 900 | WP_071207741.1 | AraC family transcriptional regulator | - |
| RvVAT039_RS24310 () | 47735..48116 | - | 382 | Protein_50 | LysR family transcriptional regulator | - |
| RvVAT039_RS24315 () | 48121..48441 | - | 321 | WP_071207739.1 | DoxX family protein | - |
| RvVAT039_RS24320 () | 48504..49976 | - | 1473 | WP_071207901.1 | aldehyde dehydrogenase | - |
| RvVAT039_RS24325 () | 50015..50593 | - | 579 | WP_071207737.1 | flavodoxin family protein | - |
| RvVAT039_RS24330 () | 50742..51650 | + | 909 | WP_071207735.1 | LysR family transcriptional regulator | - |
| RvVAT039_RS24335 () | 51834..52463 | - | 630 | WP_081364406.1 | HTH-type transcriptional repressor KstR2 | VF |
| RvVAT039_RS24340 () | 52591..53676 | + | 1086 | WP_180642282.1 | FAD-dependent monooxygenase | - |
| RvVAT039_RS24345 () | 54228..54812 | - | 585 | WP_071207729.1 | hypothetical protein | - |
| RvVAT039_RS24350 () | 54898..55134 | + | 237 | WP_071207727.1 | hypothetical protein | - |
| RvVAT039_RS24355 () | 55501..56151 | - | 651 | WP_180642284.1 | hypothetical protein | - |
| RvVAT039_RS24360 () | 56232..57947 | - | 1716 | WP_071207723.1 | ParB/RepB/Spo0J family partition protein | - |
| RvVAT039_RS24365 () | 58268..59314 | + | 1047 | WP_180642286.1 | non-homologous end-joining DNA ligase | - |
| RvVAT039_RS24370 () | 59488..64575 | - | 5088 | WP_180642288.1 | N-6 DNA methylase | - |
| RvVAT039_RS24375 () | 64675..65280 | - | 606 | WP_071207717.1 | DUF1419 domain-containing protein | - |
| RvVAT039_RS24380 () | 65414..66349 | - | 936 | WP_180642290.1 | DUF3991 and toprim domain-containing protein | - |
| RvVAT039_RS24385 () | 66524..66703 | - | 180 | WP_020046815.1 | hypothetical protein | - |
| RvVAT039_RS24390 () | 67019..67408 | + | 390 | WP_071207709.1 | IS66 family transposase ISRel8 | Transposase |
| RvVAT039_RS24395 () | 67405..67758 | + | 354 | WP_071207707.1 | IS66 family transposase ISRel8 | Transposase |
| RvVAT039_RS24400 () | 67828..69405 | + | 1578 | WP_180642293.1 | IS66 family transposase ISRel8 | Transposase |
| RvVAT039_RS24405 () | 69477..70373 | - | 897 | WP_071207713.1 | DMT family transporter | - |
| RvVAT039_RS24410 () | 70532..71419 | + | 888 | WP_071207711.1 | HTH-type transcriptional regulator YofA | VF |
| RvVAT039_RS24415 () | 71526..72545 | + | 1020 | WP_139192333.1 | IS110 family transposase | - |
| RvVAT039_RS24420 () | 72844..72999 | + | 156 | WP_156753188.1 | hypothetical protein | - |
| RvVAT039_RS24425 () | 73237..74697 | - | 1461 | WP_071207895.1 | oligosaccharide flippase family protein | - |
| RvVAT039_RS24430 () | 74759..75670 | - | 912 | WP_071207893.1 | chemotaxis protein CheR | - |
| RvVAT039_RS24435 () | 76456..76656 | - | 201 | WP_071207891.1 | hypothetical protein | - |
| RvVAT039_RS24440 () | 77067..77522 | - | 456 | WP_071207926.1 | DUF411 domain-containing protein | - |
| RvVAT039_RS24445 () | 77537..80698 | - | 3162 | WP_071207887.1 | efflux RND transporter permease subunit | - |
| RvVAT039_RS24450 () | 80695..82122 | - | 1428 | WP_081364419.1 | efflux RND transporter periplasmic adaptor subunit | - |
| RvVAT039_RS24455 () | 82119..82523 | - | 405 | WP_071207885.1 | FixH family protein | - |
| RvVAT039_RS24460 () | 82647..83051 | - | 405 | WP_081364418.1 | hypothetical protein | - |
| RvVAT039_RS24465 () | 83234..83455 | + | 222 | WP_071207883.1 | heavy-metal-associated domain-containing protein | - |
| RvVAT039_RS24470 () | 83657..84319 | - | 663 | WP_071207881.1 | hypothetical protein | - |
| RvVAT039_RS24475 () | 84484..86964 | + | 2481 | WP_071207879.1 | Copper-transporting P-type ATPase | VF |
| RvVAT039_RS24480 () | 87019..87462 | + | 444 | WP_180642213.1 | Cu(I)-responsive transcriptional regulator | - |
| RvVAT039_RS24485 () | 87643..88209 | - | 567 | WP_139192331.1 | cytochrome c | - |
| RvVAT039_RS24490 () | 88450..88746 | + | 297 | WP_081364422.1 | hypothetical protein | - |
| RvVAT039_RS24495 () | 88843..90327 | + | 1485 | WP_071207875.1 | multicopper oxidase domain-containing protein | - |
| RvVAT039_RS24500 () | 90531..92657 | + | 2127 | WP_071207873.1 | copper-translocating P-type ATPase | - |
| RvVAT039_RS24505 () | 92654..92866 | + | 213 | WP_071207871.1 | DUF2933 domain-containing protein | - |
| RvVAT039_RS24510 () | 93313..93741 | - | 429 | WP_071207867.1 | DUF305 domain-containing protein | - |
| RvVAT039_RS24520 () | 94863..95090 | + | 228 | WP_071207921.1 | hypothetical protein | - |
| RvVAT039_RS24525 () | 95087..96550 | + | 1464 | WP_071207865.1 | TolC family protein | - |
| RvVAT039_RS24530 () | 96565..97914 | + | 1350 | WP_071207863.1 | copper oxidase | - |
| RvVAT039_RS24535 () | 97947..98426 | + | 480 | WP_071207861.1 | cupredoxin domain-containing protein | - |
| RvVAT039_RS24540 () | 98448..98732 | + | 285 | WP_071207859.1 | copper-binding protein | - |
| RvVAT039_RS24545 () | 98819..100168 | + | 1350 | WP_071207857.1 | adenylate/guanylate cyclase domain-containing protein | - |
| RvVAT039_RS24550 () | 100800..102305 | - | 1506 | WP_071206101.1 | tripartite tricarboxylate transporter permease | - |
| RvVAT039_RS24555 () | 102319..102786 | - | 468 | WP_003551173.1 | tripartite tricarboxylate transporter TctB family protein | - |
| RvVAT039_RS24560 () | 102826..103902 | - | 1077 | WP_032489006.1 | tartrate dehydrogenase | - |
| RvVAT039_RS24565 () | 104020..104988 | - | 969 | WP_180642215.1 | tripartite tricarboxylate transporter substrate binding protein BugD | - |
| RvVAT039_RS24570 () | 105137..105880 | + | 744 | WP_071207344.1 | GntR family transcriptional regulator | - |
| RvVAT039_RS24575 () | 105866..107314 | - | 1449 | WP_071207358.1 | pyruvate kinase | - |
| RvVAT039_RS24580 () | 107323..108591 | - | 1269 | WP_071201628.1 | glycerate kinase | - |
| RvVAT039_RS24585 () | 108588..109682 | - | 1095 | WP_071207341.1 | tartrate dehydrogenase | - |
| RvVAT039_RS24590 () | 109704..111005 | - | 1302 | WP_046802348.1 | MFS transporter | - |
| RvVAT039_RS24595 () | 111129..112043 | + | 915 | WP_071201483.1 | LysR family transcriptional regulator | - |
| RvVAT039_RS24600 () | 112190..113452 | - | 1263 | WP_070149873.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| RvVAT039_RS24605 () | 113449..113676 | - | 228 | WP_070149959.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| RvVAT039_RS24610 () | 113824..114735 | - | 912 | WP_070149872.1 | HNH endonuclease | - |
| RvVAT039_RS24615 () | 114891..117239 | + | 2349 | WP_071201484.1 | hypothetical protein | - |
| RvVAT039_RS24620 () | 117494..118132 | - | 639 | WP_070149870.1 | ATP-binding cassette domain-containing protein | - |
| RvVAT039_RS24625 () | 118141..118905 | - | 765 | WP_070149958.1 | Putative phosphonates utilization ATP-binding protein PhnK | VF |
| RvVAT039_RS24630 () | 118898..119743 | - | 846 | WP_062553581.1 | alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ | - |
| RvVAT039_RS24635 () | 119736..120797 | - | 1062 | WP_070149869.1 | carbon-phosphorus lyase complex subunit PhnI | - |
| RvVAT039_RS24640 () | 120781..121356 | - | 576 | WP_070149868.1 | phosphonate C-P lyase system protein PhnH | - |
| RvVAT039_RS24645 () | 121353..121832 | - | 480 | WP_070149867.1 | phosphonate C-P lyase system protein PhnG | - |
| RvVAT039_RS24650 () | 121807..122322 | - | 516 | WP_062553577.1 | hypothetical protein | - |
| RvVAT039_RS24655 () | 122343..123095 | - | 753 | WP_070149866.1 | ABC transporter ATP-binding protein | - |
| RvVAT039_RS24660 () | 123092..124144 | - | 1053 | WP_070149865.1 | putative ABC transporter permease protein | VF |
| RvVAT039_RS24665 () | 124141..125238 | - | 1098 | WP_070149864.1 | ABC transporter substrate-binding protein | - |
| RvVAT039_RS24670 () | 125321..126268 | + | 948 | WP_070167286.1 | LysR family transcriptional regulator | - |
| RvVAT039_RS24675 () | 126492..127001 | - | 510 | WP_070149862.1 | hypothetical protein | - |
| RvVAT039_RS24680 () | 126994..128304 | - | 1311 | WP_081341772.1 | hypothetical protein | - |
| RvVAT039_RS24685 () | 128301..129059 | - | 759 | WP_071201486.1 | ABC transporter ATP-binding protein | - |
| RvVAT039_RS24690 () | 129056..130108 | - | 1053 | WP_081344225.1 | putative ABC transporter permease protein | VF |
| RvVAT039_RS24695 () | 130110..131195 | - | 1086 | WP_070167313.1 | ABC transporter substrate-binding protein | - |
| RvVAT039_RS24700 () | 132111..132284 | + | 174 | WP_156753189.1 | hypothetical protein | - |
| RvVAT039_RS24705 () | 132281..132577 | + | 297 | WP_071201489.1 | hypothetical protein | - |
| RvVAT039_RS24710 () | 132582..132896 | + | 315 | WP_139192330.1 | hypothetical protein | - |
| RvVAT039_RS24715 () | 132912..133787 | + | 876 | WP_071201491.1 | hypothetical protein | - |
| RvVAT039_RS24720 () | 134055..134699 | + | 645 | WP_180642216.1 | hypothetical protein | - |
| RvVAT039_RS24725 () | 134752..135108 | + | 357 | WP_071201493.1 | hypothetical protein | - |
| RvVAT039_RS24730 () | 135114..135608 | - | 495 | WP_071201597.1 | hypothetical protein | - |
| RvVAT039_RS24735 () | 135650..136156 | - | 507 | WP_015647687.1 | GIY-YIG nuclease family protein | - |
| RvVAT039_RS24740 () | 136192..137130 | - | 939 | WP_071201494.1 | hypothetical protein | - |
| RvVAT039_RS24745 () | 137123..137809 | - | 687 | WP_015647685.1 | TauD/TfdA family dioxygenase | - |
| RvVAT039_RS24750 () | 137819..140794 | - | 2976 | WP_071207855.1 | AAA family ATPase | - |
| RvVAT039_RS24755 () | 140977..141798 | - | 822 | WP_071201496.1 | hypothetical protein | - |
| RvVAT039_RS24760 () | 141858..142655 | - | 798 | WP_071201497.1 | TIGR02391 family protein | - |
| RvVAT039_RS24765 () | 142671..144416 | - | 1746 | WP_071201498.1 | DUF2326 domain-containing protein | - |
| RvVAT039_RS24770 () | 144413..144640 | - | 228 | WP_071201499.1 | hypothetical protein | - |
| RvVAT039_RS24775 () | 144637..145380 | - | 744 | WP_071201500.1 | HNH endonuclease | - |
| RvVAT039_RS24780 () | 145497..146090 | - | 594 | WP_071201598.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| RvVAT039_RS24785 () | 146308..150123 | + | 3816 | WP_071201501.1 | CHAT domain-containing protein | - |
| RvVAT039_RS24790 () | 150159..150605 | - | 447 | WP_071201502.1 | type II toxin-antitoxin system VapC family toxin | - |
| RvVAT039_RS24795 () | 150608..151201 | - | 594 | WP_015647675.1 | DUF433 domain-containing protein | - |
| RvVAT039_RS24800 () | 151292..152418 | - | 1127 | Protein_147 | DUF1612 and helix-turn-helix domain-containing protein | - |
| RvVAT039_RS24805 () | 152609..153757 | + | 1149 | WP_180642295.1 | site-specific integrase | - |
| RvVAT039_RS24810 () | 153808..154722 | - | 915 | WP_180642218.1 | hypothetical protein | - |
| RvVAT039_RS24815 () | 154792..155901 | - | 1110 | WP_180642297.1 | hypothetical protein | - |
| RvVAT039_RS24820 () | 156070..157671 | + | 1602 | WP_180642220.1 | hypothetical protein | - |
| RvVAT039_RS24825 () | 157820..160675 | - | 2856 | WP_180642299.1 | ATP-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|