MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 43453 bp
Accession: NZ_AP023230 Location: 2978593..3022045 Organism: Escherichia coli strain YJ4 Replicon: chromosome
Accession: NZ_AP023230 Location: 2978593..3022045 Organism: Escherichia coli strain YJ4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS62_RS14220 () | 2973766..2974221 | + | 456 | WP_001087289.1 | type II secretion system major pseudopilin GspG | - |
| HXS62_RS14225 () | 2974239..2974787 | + | 549 | WP_061182151.1 | type II secretion system minor pseudopilin GspH | - |
| HXS62_RS14230 () | 2974784..2975155 | + | 372 | WP_000820113.1 | type II secretion system minor pseudopilin GspI | - |
| HXS62_RS14235 () | 2975152..2975751 | + | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
| HXS62_RS14240 () | 2975754..2976731 | + | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| HXS62_RS14245 () | 2976728..2977906 | + | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| HXS62_RS14250 () | 2977908..2978444 | + | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| HXS62_RS14255 () | 2978726..2979568 | - | 843 | WP_032152755.1 | DUF4942 domain-containing protein | - |
| HXS62_RS14260 () | 2979653..2979850 | - | 198 | WP_032152719.1 | DUF957 domain-containing protein | - |
| HXS62_RS14265 () | 2979862..2980350 | - | 489 | WP_001774608.1 | hypothetical protein | - |
| HXS62_RS14270 () | 2980347..2980724 | - | 378 | WP_001774607.1 | TA system toxin CbtA family protein | Toxin Detail |
| HXS62_RS14275 () | 2980814..2981182 | - | 369 | WP_001774606.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin Detail |
| HXS62_RS14280 () | 2981232..2981876 | - | 645 | WP_001774605.1 | hypothetical protein | - |
| HXS62_RS14285 () | 2981895..2982116 | - | 222 | WP_000692312.1 | DUF987 domain-containing protein | - |
| HXS62_RS14290 () | 2982179..2982655 | - | 477 | WP_001297237.1 | RadC family protein | - |
| HXS62_RS14295 () | 2982671..2983150 | - | 480 | WP_032152717.1 | antirestriction protein | - |
| HXS62_RS14300 () | 2983489..2984307 | - | 819 | WP_016238867.1 | DUF945 domain-containing protein | - |
| HXS62_RS14305 () | 2984406..2984639 | - | 234 | WP_126675705.1 | DUF905 family protein | - |
| HXS62_RS14310 () | 2984645..2985322 | - | 678 | WP_001097305.1 | hypothetical protein | - |
| HXS62_RS14315 () | 2985470..2986150 | - | 681 | WP_032082725.1 | WYL domain-containing protein | - |
| HXS62_RS14320 () | 2986353..2987237 | - | 885 | WP_001116802.1 | 50S ribosome-binding GTPase | - |
| HXS62_RS14325 () | 2987338..2988561 | + | 1224 | WP_001774716.1 | hypothetical protein | - |
| HXS62_RS14330 () | 2989725..2990255 | - | 531 | WP_000778605.1 | hypothetical protein | - |
| HXS62_RS14335 () | 2990925..2991656 | + | 732 | WP_001075491.1 | inovirus Gp2 family protein | - |
| HXS62_RS14340 () | 2991983..2993587 | + | 1605 | WP_001083417.1 | DUF3987 domain-containing protein | - |
| HXS62_RS14345 () | 2995128..2995694 | + | 567 | WP_016238927.1 | inovirus-type Gp2 protein | - |
| HXS62_RS14350 () | 2995942..2996517 | + | 576 | WP_000991584.1 | hypothetical protein | - |
| HXS62_RS14355 () | 2996586..2996822 | + | 237 | WP_000958149.1 | AlpA family transcriptional regulator | - |
| HXS62_RS14360 () | 2996819..2996977 | + | 159 | WP_000831911.1 | hypothetical protein | - |
| HXS62_RS14365 () | 2997065..2997613 | + | 549 | WP_001167422.1 | hypothetical protein | - |
| HXS62_RS14370 () | 2997632..2997976 | - | 345 | WP_000166952.1 | ProQ/FinO family protein | - |
| HXS62_RS14375 () | 2997973..2998146 | - | 174 | WP_000258195.1 | hypothetical protein | - |
| HXS62_RS14380 () | 2998609..2999694 | + | 1086 | WP_000179014.1 | DNA sulfur modification protein DndB | - |
| HXS62_RS14385 () | 2999691..3001325 | + | 1635 | WP_000041168.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| HXS62_RS14390 () | 3001315..3003315 | + | 2001 | WP_000905896.1 | DNA sulfur modification protein DndD | - |
| HXS62_RS14395 () | 3003315..3003671 | + | 357 | WP_000937304.1 | DNA sulfur modification protein DndE | - |
| HXS62_RS14400 () | 3003730..3004536 | - | 807 | WP_071533805.1 | DGQHR domain-containing protein | - |
| HXS62_RS14405 () | 3004585..3004890 | - | 306 | WP_000071509.1 | hypothetical protein | - |
| HXS62_RS14410 () | 3004891..3005409 | - | 519 | WP_112044940.1 | accessory gene regulator B family protein | - |
| HXS62_RS14415 () | 3005447..3010501 | - | 5055 | WP_000114120.1 | DNA phosphorothioation-dependent restriction protein DptH | - |
| HXS62_RS14420 () | 3010482..3011807 | - | 1326 | WP_000283233.1 | DNA phosphorothioation-dependent restriction protein DptG | - |
| HXS62_RS14425 () | 3011812..3013461 | - | 1650 | WP_001274542.1 | DNA phosphorothioation-dependent restriction protein DptF | - |
| HXS62_RS14430 () | 3014074..3014814 | + | 741 | WP_001477155.1 | porin family protein | - |
| HXS62_RS14435 () | 3014988..3016487 | + | 1500 | WP_001774678.1 | phosphoethanolamine transferase | - |
| HXS62_RS14440 () | 3016596..3020111 | - | 3516 | WP_000344091.1 | ATP-binding protein | - |
| HXS62_RS14445 () | 3020563..3021825 | - | 1263 | WP_176486910.1 | integrase arm-type DNA-binding domain-containing protein | - |
| HXS62_RS14455 () | 3022204..3022911 | - | 708 | WP_000234514.1 | DUF554 domain-containing protein | - |
| HXS62_RS14460 () | 3023309..3025444 | + | 2136 | WP_001326492.1 | ornithine decarboxylase | - |
| HXS62_RS14465 () | 3025494..3026750 | - | 1257 | WP_001049791.1 | nucleoside permease NupG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|