MGE detailed information
MGE type: Prophage MGE length: 71117 bp
Accession: NZ_AP023230 Location: 1438957..1510073 Organism: Escherichia coli strain YJ4 Replicon: chromosome
Accession: NZ_AP023230 Location: 1438957..1510073 Organism: Escherichia coli strain YJ4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS62_RS06835 () | 1434689..1435762 | - | 1074 | WP_001299187.1 | patatin family protein | - |
| HXS62_RS06840 () | 1435884..1436045 | - | 162 | WP_000490275.1 | DUF1328 domain-containing protein | - |
| HXS62_RS06845 () | 1436172..1436777 | - | 606 | WP_001295410.1 | molecular chaperone OsmY | - |
| HXS62_RS06850 () | 1437170..1438756 | - | 1587 | WP_000202564.1 | peptide chain release factor 3 | - |
| HXS62_RS06855 () | 1438957..1440177 | - | 1221 | WP_000343760.1 | ISL3-like element ISKox3 family transposase | - |
| HXS62_RS06860 () | 1440300..1440560 | + | 261 | WP_001217545.1 | DinI-like family protein | - |
| HXS62_RS06865 () | 1440918..1442228 | + | 1311 | Protein_1333 | RNA-dependent DNA polymerase | - |
| HXS62_RS06875 () | 1443451..1443747 | + | 297 | Protein_1335 | toll/interleukin-1 receptor domain-containing protein | - |
| HXS62_RS24825 () | 1443931..1444205 | - | 275 | Protein_1336 | recombinase family protein | - |
| HXS62_RS06885 () | 1444192..1444323 | - | 132 | Protein_1337 | tail fiber assembly protein | - |
| HXS62_RS06890 () | 1444375..1448133 | - | 3759 | WP_164529487.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HXS62_RS06895 () | 1448198..1448797 | - | 600 | WP_032329899.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| HXS62_RS06900 () | 1448868..1452365 | - | 3498 | WP_164529486.1 | host specificity protein J | - |
| HXS62_RS06905 () | 1452426..1453073 | - | 648 | WP_074148952.1 | tail assembly protein | - |
| HXS62_RS06910 () | 1452971..1453714 | - | 744 | WP_063090555.1 | C40 family peptidase | - |
| HXS62_RS06915 () | 1453720..1454418 | - | 699 | WP_001152385.1 | phage minor tail protein L | - |
| HXS62_RS06920 () | 1454428..1454757 | - | 330 | WP_000447248.1 | phage tail protein | - |
| HXS62_RS06925 () | 1454757..1457822 | - | 3066 | WP_063090556.1 | phage tail tape measure protein | - |
| HXS62_RS06930 () | 1457794..1458123 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| HXS62_RS06935 () | 1458132..1458518 | - | 387 | WP_001300035.1 | phage minor tail protein G | - |
| HXS62_RS06940 () | 1458579..1459322 | - | 744 | WP_063090557.1 | phage tail protein | - |
| HXS62_RS06945 () | 1459334..1459735 | - | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| HXS62_RS06950 () | 1459732..1460310 | - | 579 | WP_000677106.1 | phage tail protein | - |
| HXS62_RS06955 () | 1460322..1460597 | - | 276 | WP_001283144.1 | DNA breaking-rejoining protein | - |
| HXS62_RS06960 () | 1460590..1460913 | - | 324 | WP_001097050.1 | DUF2190 family protein | - |
| HXS62_RS06965 () | 1461000..1463027 | - | 2028 | WP_001136590.1 | Clp protease ClpP | - |
| HXS62_RS06970 () | 1462972..1464480 | - | 1509 | WP_000985945.1 | phage portal protein | - |
| HXS62_RS06975 () | 1464480..1464692 | - | 213 | WP_001072975.1 | hypothetical protein | - |
| HXS62_RS06980 () | 1464689..1466791 | - | 2103 | WP_000934119.1 | phage terminase large subunit family protein | - |
| HXS62_RS06985 () | 1466791..1467285 | - | 495 | WP_000373425.1 | DUF1441 family protein | - |
| HXS62_RS06990 () | 1467961..1468113 | - | 153 | WP_001139681.1 | hypothetical protein | - |
| HXS62_RS06995 () | 1468101..1468568 | - | 468 | WP_029700804.1 | lysis protein | - |
| HXS62_RS07000 () | 1468565..1469062 | - | 498 | WP_001135250.1 | lysozyme RrrD | - |
| HXS62_RS07005 () | 1469062..1469277 | - | 216 | WP_000839596.1 | phage lysis protein EssD | - |
| HXS62_RS07010 () | 1469345..1470397 | - | 1053 | WP_063090558.1 | site-specific DNA-methyltransferase | - |
| HXS62_RS07015 () | 1470548..1470751 | - | 204 | WP_000917724.1 | hypothetical protein | - |
| HXS62_RS07020 () | 1470975..1471400 | - | 426 | WP_063090559.1 | hypothetical protein | - |
| HXS62_RS07025 () | 1471681..1472433 | - | 753 | WP_001547994.1 | antitermination protein | - |
| HXS62_RS07030 () | 1472447..1473436 | - | 990 | WP_063090560.1 | DUF968 domain-containing protein | - |
| HXS62_RS07035 () | 1473444..1474241 | - | 798 | WP_001709862.1 | KilA-N domain-containing protein | - |
| HXS62_RS07040 () | 1474261..1474650 | - | 390 | WP_001398927.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HXS62_RS07045 () | 1474647..1474973 | - | 327 | WP_000210170.1 | LexA family transcriptional regulator | - |
| HXS62_RS07050 () | 1474973..1475467 | - | 495 | WP_001373594.1 | PerC family transcriptional regulator | - |
| HXS62_RS07055 () | 1475464..1476282 | - | 819 | WP_001677149.1 | helix-turn-helix domain-containing protein | - |
| HXS62_RS07060 () | 1476279..1476515 | - | 237 | WP_000933942.1 | hypothetical protein | - |
| HXS62_RS07065 () | 1476508..1477344 | - | 837 | WP_001446923.1 | ash family protein | - |
| HXS62_RS07070 () | 1477341..1477892 | - | 552 | WP_176486897.1 | hypothetical protein | - |
| HXS62_RS07075 () | 1477936..1478136 | - | 201 | WP_000649477.1 | helix-turn-helix domain-containing protein | - |
| HXS62_RS07080 () | 1478227..1478901 | + | 675 | WP_000848749.1 | LexA family transcriptional regulator | - |
| HXS62_RS07085 () | 1479647..1480009 | + | 363 | WP_000135682.1 | hypothetical protein | - |
| HXS62_RS07090 () | 1480075..1480899 | + | 825 | WP_000081287.1 | DUF2303 family protein | - |
| HXS62_RS07095 () | 1481028..1481564 | + | 537 | WP_001401560.1 | 5'-deoxynucleotidase | - |
| HXS62_RS07100 () | 1481555..1481917 | + | 363 | WP_001242749.1 | phage protein | - |
| HXS62_RS07105 () | 1481917..1482537 | + | 621 | WP_001377405.1 | DUF551 domain-containing protein | - |
| HXS62_RS07110 () | 1482970..1484670 | - | 1701 | WP_001419254.1 | AIPR family protein | - |
| HXS62_RS07115 () | 1484927..1486150 | - | 1224 | WP_001680166.1 | site-specific integrase | - |
| HXS62_RS07120 () | 1486536..1487213 | - | 678 | WP_000870712.1 | pyrimidine 5'-nucleotidase | - |
| HXS62_RS07125 () | 1487228..1487674 | - | 447 | WP_001092450.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| HXS62_RS07130 () | 1487643..1488056 | - | 414 | WP_000204018.1 | DNA polymerase III subunit psi | - |
| HXS62_RS07135 () | 1488159..1489190 | + | 1032 | WP_001272262.1 | 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC | - |
| HXS62_RS07155 () | 1489851..1490087 | - | 237 | WP_001362956.1 | DUF1435 domain-containing protein | - |
| HXS62_RS07160 () | 1490228..1491016 | + | 789 | WP_000331551.1 | siderophore-iron reductase FhuF | - |
| HXS62_RS07165 () | 1491054..1491731 | - | 678 | WP_001300509.1 | DNA-binding transcriptional activator BglJ | - |
| HXS62_RS07170 () | 1491689..1492414 | - | 726 | WP_000936635.1 | response regulator transcription factor | - |
| HXS62_RS07175 () | 1493033..1493803 | + | 771 | WP_001295409.1 | threonine/serine exporter ThrE family protein | - |
| HXS62_RS07180 () | 1493794..1494267 | + | 474 | WP_000538182.1 | threonine/serine exporter | - |
| HXS62_RS07185 () | 1494375..1494914 | + | 540 | WP_000098818.1 | primosomal protein DnaT | - |
| HXS62_RS07190 () | 1494917..1495654 | + | 738 | WP_000799911.1 | DNA replication protein DnaC | - |
| HXS62_RS07195 () | 1495703..1496197 | + | 495 | WP_001308243.1 | DUF2501 domain-containing protein | - |
| HXS62_RS07200 () | 1496451..1498742 | + | 2292 | WP_001292655.1 | phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase | - |
| HXS62_RS07205 () | 1498881..1499903 | - | 1023 | WP_000106030.1 | L-galactonate oxidoreductase | - |
| HXS62_RS07210 () | 1500054..1500753 | + | 700 | Protein_1399 | IS1 family transposase | - |
| HXS62_RS07215 () | 1500820..1501734 | + | 915 | WP_000091570.1 | GntR family transcriptional regulator | - |
| HXS62_RS07220 () | 1501949..1503310 | + | 1362 | WP_000410120.1 | MFS transporter | - |
| HXS62_RS07225 () | 1503359..1505014 | - | 1656 | WP_000919541.1 | methyl-accepting chemotaxis protein | - |
| HXS62_RS07230 () | 1505391..1507541 | + | 2151 | WP_001446922.1 | pyruvate/proton symporter BtsT | - |
| HXS62_RS07235 () | 1507591..1507794 | + | 204 | WP_000467859.1 | YbdD/YjiX family protein | - |
| HXS62_RS07240 () | 1507805..1508761 | + | 957 | WP_001297640.1 | GTPase | - |
| HXS62_RS07245 () | 1508795..1509097 | - | 303 | WP_000063156.1 | BrnA antitoxin family protein | Antitoxin Detail |
| HXS62_RS07250 () | 1509084..1509371 | - | 288 | WP_001297643.1 | BrnT family toxin | Toxin Detail |
| HXS62_RS07255 () | 1509570..1510267 | - | 698 | Protein_1408 | IS1 family transposase | - |
| HXS62_RS07260 () | 1510324..1510419 | + | 96 | Protein_1409 | dienelactone hydrolase family protein | - |
| HXS62_RS07265 () | 1510565..1511797 | + | 1233 | WP_001380906.1 | multidrug efflux MFS transporter MdtM | - |
| HXS62_RS07270 () | 1511838..1513118 | + | 1281 | WP_001037380.1 | DUF445 domain-containing protein | - |
| HXS62_RS07275 () | 1513234..1514385 | + | 1152 | WP_176486898.1 | 2-hydroxyacyl-CoA dehydratase subunit D | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|