MGE detailed information
MGE type: Genomic_island MGE length: 105338 bp
Accession: NZ_AP023230 Location: 1028327..1133664 Organism: Escherichia coli strain YJ4 Replicon: chromosome
Accession: NZ_AP023230 Location: 1028327..1133664 Organism: Escherichia coli strain YJ4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS62_RS04970 () | 1024044..1024712 | + | 669 | WP_001209100.1 | hypothetical protein | - |
| HXS62_RS04975 () | 1024955..1025650 | - | 696 | WP_000370307.1 | lactate utilization protein C | - |
| HXS62_RS04980 () | 1025643..1027070 | - | 1428 | WP_000023927.1 | iron-sulfur cluster-binding protein | - |
| HXS62_RS04985 () | 1027081..1027800 | - | 720 | WP_001102108.1 | (Fe-S)-binding protein | - |
| HXS62_RS04990 () | 1028327..1029181 | - | 855 | WP_000339594.1 | DNA-binding transcriptional regulator RclR | - |
| HXS62_RS04995 () | 1029407..1030732 | + | 1326 | WP_001046307.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| HXS62_RS05000 () | 1030841..1031077 | + | 237 | WP_000474084.1 | DUF1471 domain-containing protein | - |
| HXS62_RS05005 () | 1031089..1031682 | + | 594 | WP_001299021.1 | reactive chlorine species resistance protein RclC | - |
| HXS62_RS05010 () | 1031841..1031969 | - | 129 | Protein_972 | aldo/keto reductase | - |
| HXS62_RS05015 () | 1032272..1033123 | + | 852 | WP_000621009.1 | helix-turn-helix domain-containing protein | - |
| HXS62_RS05020 () | 1033263..1037519 | - | 4257 | WP_000020221.1 | intimin-like adhesin FdeC | - |
| HXS62_RS05025 () | 1038635..1038736 | + | 102 | WP_000662258.1 | hypothetical protein | - |
| HXS62_RS05030 () | 1039100..1039363 | + | 264 | WP_000803998.1 | type B 50S ribosomal protein L31 | - |
| HXS62_RS05035 () | 1039363..1039503 | + | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| HXS62_RS05040 () | 1039538..1039765 | - | 228 | WP_001147279.1 | hypothetical protein | - |
| HXS62_RS05045 () | 1040589..1041131 | + | 543 | WP_001301257.1 | ECP biosynthesis operon DNA-binding transcriptional regulator EcpR | - |
| HXS62_RS05050 () | 1041211..1041908 | - | 698 | Protein_980 | IS1 family transposase | - |
| HXS62_RS05055 () | 1041983..1042570 | + | 588 | WP_000730972.1 | common pilus major fimbrillin subunit EcpA | - |
| HXS62_RS05060 () | 1042628..1043296 | + | 669 | WP_000716398.1 | fimbrial chaperone EcpB | - |
| HXS62_RS05065 () | 1043322..1045847 | + | 2526 | WP_001131096.1 | fimbrial usher EcpC | - |
| HXS62_RS05070 () | 1045837..1047480 | + | 1644 | WP_001310578.1 | fimbrial adhesin EcpD | - |
| HXS62_RS05075 () | 1047449..1048159 | + | 711 | WP_001350485.1 | fimbrial chaperone EcpE | - |
| HXS62_RS05080 () | 1048472..1048801 | + | 330 | WP_001303809.1 | YkgJ family cysteine cluster protein | - |
| HXS62_RS05085 () | 1049049..1049663 | - | 615 | WP_001019920.1 | YagU family protein | - |
| HXS62_RS05090 () | 1050081..1050770 | + | 690 | WP_000070700.1 | aldehyde dehydrogenase iron-sulfur subunit | - |
| HXS62_RS05095 () | 1050767..1051723 | + | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| HXS62_RS05100 () | 1051720..1053918 | + | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| HXS62_RS05105 () | 1053928..1054884 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| HXS62_RS05110 () | 1054935..1055273 | + | 339 | Protein_992 | LysR family transcriptional regulator | - |
| HXS62_RS05115 () | 1055610..1056929 | + | 1320 | WP_000144692.1 | site-specific integrase | - |
| HXS62_RS05120 () | 1057022..1057870 | - | 849 | WP_001280510.1 | DUF4942 domain-containing protein | - |
| HXS62_RS05125 () | 1057955..1058152 | - | 198 | WP_000839267.1 | DUF957 domain-containing protein | - |
| HXS62_RS05130 () | 1058164..1058574 | - | 411 | Protein_996 | hypothetical protein | - |
| HXS62_RS05135 () | 1058768..1060312 | + | 1545 | Protein_997 | IS21-like element ISEc12 family transposase | - |
| HXS62_RS05140 () | 1060327..1061074 | + | 748 | Protein_998 | IS21-like element ISEc12 family helper ATPase IstB | - |
| HXS62_RS05145 () | 1061239..1061616 | - | 378 | WP_000854726.1 | TA system toxin CbtA family protein | Toxin Detail |
| HXS62_RS05150 () | 1061706..1062074 | - | 369 | WP_070749977.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| HXS62_RS05155 () | 1062124..1062768 | - | 645 | Protein_1001 | antitoxin of toxin-antitoxin stability system | - |
| HXS62_RS05160 () | 1062783..1063004 | - | 222 | WP_000692353.1 | DUF987 domain-containing protein | - |
| HXS62_RS05165 () | 1063073..1063549 | - | 477 | WP_001186742.1 | RadC family protein | - |
| HXS62_RS05170 () | 1063563..1064042 | - | 480 | WP_000706976.1 | antirestriction protein | - |
| HXS62_RS05175 () | 1064136..1064381 | - | 246 | WP_000680584.1 | hypothetical protein | - |
| HXS62_RS05180 () | 1064381..1065199 | - | 819 | WP_070749978.1 | DUF945 domain-containing protein | - |
| HXS62_RS05185 () | 1065527..1068373 | - | 2847 | WP_176486894.1 | Ag43/Cah family autotransporter adhesin | - |
| HXS62_RS05190 () | 1068746..1069618 | - | 873 | WP_070751363.1 | GTPase family protein | - |
| HXS62_RS05195 () | 1069882..1071438 | + | 1557 | WP_000200813.1 | type I restriction-modification system subunit M | - |
| HXS62_RS05200 () | 1071435..1072661 | + | 1227 | WP_050019106.1 | restriction endonuclease subunit S | - |
| HXS62_RS05205 () | 1072783..1075899 | + | 3117 | WP_000149676.1 | HsdR family type I site-specific deoxyribonuclease | - |
| HXS62_RS05210 () | 1076047..1076949 | - | 903 | Protein_1012 | IS5-like element ISKpn26 family transposase | - |
| HXS62_RS05215 () | 1076950..1077802 | + | 853 | Protein_1013 | N-6 DNA methylase | - |
| HXS62_RS05220 () | 1077792..1078079 | + | 288 | Protein_1014 | restriction endonuclease subunit S | - |
| HXS62_RS05225 () | 1078079..1078501 | + | 423 | Protein_1015 | DDE-type integrase/transposase/recombinase | - |
| HXS62_RS05230 () | 1078526..1079977 | + | 1452 | WP_000443938.1 | DUF262 domain-containing protein | - |
| HXS62_RS05235 () | 1079970..1082012 | + | 2043 | WP_000995975.1 | DUF262 domain-containing HNH endonuclease family protein | - |
| HXS62_RS05240 () | 1082199..1087934 | + | 5736 | WP_000108720.1 | DUF4011 domain-containing protein | - |
| HXS62_RS05245 () | 1088155..1088613 | - | 459 | Protein_1019 | IS3 family transposase | - |
| HXS62_RS24820 () | 1088694..1090157 | - | 1464 | Protein_1020 | group II intron reverse transcriptase/maturase | - |
| HXS62_RS05265 () | 1090831..1091570 | - | 740 | Protein_1021 | IS3 family transposase | - |
| HXS62_RS05270 () | 1091576..1091815 | - | 240 | Protein_1022 | hypothetical protein | - |
| HXS62_RS05275 () | 1091821..1092336 | - | 516 | WP_000523728.1 | PTS glucose transporter subunit IIA | - |
| HXS62_RS05280 () | 1092400..1093830 | - | 1431 | WP_000813683.1 | glycoside hydrolase family 32 protein | - |
| HXS62_RS05285 () | 1093827..1095104 | - | 1278 | WP_001099191.1 | MFS transporter | - |
| HXS62_RS05290 () | 1095159..1097286 | - | 2128 | Protein_1026 | alpha-galactosidase | - |
| HXS62_RS05295 () | 1097380..1098390 | - | 1011 | WP_000053329.1 | substrate-binding domain-containing protein | - |
| HXS62_RS05300 () | 1098763..1098929 | - | 167 | Protein_1028 | transposase domain-containing protein | - |
| HXS62_RS05305 () | 1099093..1100256 | + | 1164 | Protein_1029 | IS3-like element IS3 family transposase | - |
| HXS62_RS05310 () | 1100286..1100723 | - | 438 | Protein_1030 | hypothetical protein | - |
| HXS62_RS05315 () | 1101689..1103122 | - | 1434 | WP_000335705.1 | DUF3987 domain-containing protein | - |
| HXS62_RS05320 () | 1103371..1103598 | - | 228 | WP_000120391.1 | DUF3987 domain-containing protein | - |
| HXS62_RS05325 () | 1103704..1103931 | - | 228 | WP_000266638.1 | AlpA family phage regulatory protein | - |
| HXS62_RS05330 () | 1104622..1106253 | + | 1632 | WP_070749884.1 | hypothetical protein | - |
| HXS62_RS05335 () | 1106346..1106941 | - | 596 | Protein_1035 | hypothetical protein | - |
| HXS62_RS05345 () | 1107442..1108695 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| HXS62_RS05350 () | 1108707..1109810 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| HXS62_RS05355 () | 1110098..1111153 | + | 1056 | WP_000749867.1 | phosphoporin PhoE | - |
| HXS62_RS05360 () | 1111192..1111593 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| HXS62_RS05365 () | 1111651..1112895 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| - () | 1112311..1112391 | - | 81 | NuclAT_12 | - | - |
| - () | 1112311..1112391 | - | 81 | NuclAT_12 | - | - |
| - () | 1112311..1112391 | - | 81 | NuclAT_12 | - | - |
| - () | 1112311..1112391 | - | 81 | NuclAT_12 | - | - |
| HXS62_RS05370 () | 1112987..1113445 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| HXS62_RS05375 () | 1113706..1115163 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| HXS62_RS05380 () | 1115220..1115741 | - | 522 | Protein_1043 | peptide chain release factor H | - |
| HXS62_RS05385 () | 1115737..1115943 | - | 207 | Protein_1044 | RtcB family protein | - |
| HXS62_RS05390 () | 1116261..1116713 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| HXS62_RS05395 () | 1116723..1117121 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| HXS62_RS05400 () | 1117124..1117417 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| HXS62_RS05405 () | 1117469..1118524 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| HXS62_RS05410 () | 1118595..1119380 | - | 786 | WP_000207552.1 | putative lateral flagellar export/assembly protein LafU | - |
| HXS62_RS05415 () | 1119352..1121064 | + | 1713 | Protein_1050 | flagellar biosynthesis protein FlhA | - |
| HXS62_RS05420 () | 1121288..1121785 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| HXS62_RS05425 () | 1121961..1122710 | - | 750 | WP_000056849.1 | C40 family peptidase | - |
| HXS62_RS05430 () | 1122920..1123180 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| HXS62_RS05435 () | 1123183..1123461 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| HXS62_RS05440 () | 1123617..1124357 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| HXS62_RS05445 () | 1124328..1125095 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| HXS62_RS05450 () | 1125301..1125879 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
| HXS62_RS05455 () | 1126119..1128563 | + | 2445 | WP_000973083.1 | acyl-CoA dehydrogenase FadE | - |
| HXS62_RS05460 () | 1128606..1129052 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| HXS62_RS05465 () | 1129233..1130003 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| HXS62_RS05470 () | 1130044..1131180 | - | 1137 | WP_000420818.1 | ISAs1 family transposase | - |
| HXS62_RS05475 () | 1131611..1132003 | - | 393 | WP_001101839.1 | hypothetical protein | - |
| HXS62_RS05480 () | 1131981..1132772 | - | 792 | Protein_1063 | RHS domain-containing protein | - |
| HXS62_RS05485 () | 1132827..1133509 | + | 683 | Protein_1064 | transposase | - |
| HXS62_RS05490 () | 1133509..1133858 | + | 350 | Protein_1065 | IS66 family insertion sequence element accessory protein TnpB | - |
| HXS62_RS05495 () | 1133878..1135449 | + | 1572 | WP_000381395.1 | IS66 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|