MGE detailed information
MGE type: Prophage MGE length: 96656 bp
Accession: NZ_AP022525 Location: 2214983..2311638 Organism: Escherichia coli strain THO-003 Replicon: chromosome
Accession: NZ_AP022525 Location: 2214983..2311638 Organism: Escherichia coli strain THO-003 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF28_RS10640 () | 2212031..2213002 | - | 972 | WP_000564759.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| JLF28_RS10645 () | 2212999..2213742 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| JLF28_RS10650 () | 2213783..2214178 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| JLF28_RS10655 () | 2214231..2215001 | - | 771 | WP_042040108.1 | DUF72 domain-containing protein | - |
| JLF28_RS10660 () | 2214983..2216296 | - | 1314 | WP_000362005.1 | Inorganic triphosphatase ; Integrase | Integrase |
| JLF28_RS10665 () | 2216352..2216588 | - | 237 | WP_000528718.1 | excisionase family protein | - |
| JLF28_RS10670 () | 2216597..2216743 | - | 147 | WP_001030156.1 | hypothetical protein | - |
| JLF28_RS10675 () | 2216747..2216989 | - | 243 | WP_000457723.1 | DUF4222 domain-containing protein | - |
| JLF28_RS10680 () | 2217074..2217418 | - | 345 | WP_021519728.1 | hypothetical protein | - |
| JLF28_RS10685 () | 2217415..2217582 | - | 168 | WP_021519727.1 | hypothetical protein | - |
| JLF28_RS10690 () | 2217593..2217856 | - | 264 | WP_000224227.1 | hypothetical protein | - |
| JLF28_RS10695 () | 2217858..2218268 | - | 411 | WP_021519726.1 | hypothetical protein | - |
| JLF28_RS10700 () | 2218270..2219085 | - | 816 | WP_021519725.1 | ead/Ea22-like family protein | - |
| JLF28_RS10705 () | 2219072..2219386 | - | 315 | WP_021519724.1 | hypothetical protein | - |
| JLF28_RS10710 () | 2219340..2219657 | - | 318 | WP_000179800.1 | DUF4752 family protein | - |
| JLF28_RS10715 () | 2219906..2220487 | - | 582 | WP_001199104.1 | hypothetical protein | - |
| JLF28_RS10720 () | 2220493..2220675 | - | 183 | WP_021519723.1 | hypothetical protein | - |
| JLF28_RS10725 () | 2220870..2221076 | - | 207 | WP_021519722.1 | hypothetical protein | - |
| JLF28_RS10730 () | 2221364..2221867 | - | 504 | WP_000608402.1 | helix-turn-helix domain-containing protein | - |
| JLF28_RS10735 () | 2221971..2222627 | - | 657 | WP_000838344.1 | helix-turn-helix domain-containing protein | - |
| JLF28_RS10740 () | 2222963..2223670 | + | 708 | WP_001090259.1 | Rha family transcriptional regulator | - |
| JLF28_RS10745 () | 2223779..2224441 | + | 663 | WP_029700954.1 | ash family protein | - |
| JLF28_RS10750 () | 2224438..2225289 | + | 852 | WP_029700955.1 | Rha family phage regulatory protein | - |
| JLF28_RS10755 () | 2225286..2225480 | + | 195 | WP_000626792.1 | hypothetical protein | - |
| JLF28_RS10760 () | 2225477..2225701 | + | 225 | WP_000618007.1 | hypothetical protein | - |
| JLF28_RS10765 () | 2225994..2226980 | + | 987 | WP_000092417.1 | hypothetical protein | - |
| JLF28_RS10770 () | 2226991..2227890 | + | 900 | WP_000988266.1 | ATP-binding protein | - |
| JLF28_RS10775 () | 2227887..2229287 | + | 1401 | WP_029700958.1 | replicative DNA helicase | - |
| JLF28_RS10780 () | 2229284..2229541 | + | 258 | WP_001520742.1 | hypothetical protein | - |
| JLF28_RS10785 () | 2229541..2229909 | + | 369 | WP_001205451.1 | antitermination protein | - |
| JLF28_RS10790 () | 2229973..2231013 | + | 1041 | WP_001025378.1 | DNA cytosine methyltransferase | - |
| JLF28_RS10795 () | 2230982..2231671 | - | 690 | WP_000052342.1 | hypothetical protein | - |
| JLF28_RS10800 () | 2231674..2232831 | - | 1158 | WP_000209290.1 | DUF262 domain-containing protein | - |
| JLF28_RS10805 () | 2233085..2233282 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| JLF28_RS10810 () | 2233433..2233885 | + | 453 | Protein_2116 | site-specific DNA-methyltransferase | - |
| JLF28_RS10815 () | 2233879..2235315 | + | 1437 | Protein_2117 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| JLF28_RS10820 () | 2235466..2235681 | + | 216 | WP_000284510.1 | class II holin family protein | - |
| JLF28_RS10825 () | 2235686..2236036 | + | 351 | WP_000193280.1 | YdfR family protein | - |
| JLF28_RS10830 () | 2236100..2236633 | + | 534 | WP_016248004.1 | lysozyme | - |
| JLF28_RS10835 () | 2236932..2237399 | + | 468 | WP_001082546.1 | lysis protein | - |
| JLF28_RS10840 () | 2237750..2237890 | + | 141 | WP_000347013.1 | hypothetical protein | - |
| JLF28_RS10845 () | 2238023..2238208 | - | 186 | WP_001329960.1 | YlcI/YnfO family protein | - |
| JLF28_RS10850 () | 2238596..2239144 | + | 549 | WP_001102145.1 | terminase small subunit | - |
| JLF28_RS10855 () | 2239116..2241044 | + | 1929 | WP_001348272.1 | phage terminase large subunit family protein | - |
| JLF28_RS10860 () | 2241028..2241234 | + | 207 | WP_000259002.1 | head-tail joining protein | - |
| JLF28_RS10865 () | 2241231..2242823 | + | 1593 | WP_029701046.1 | phage portal protein | - |
| JLF28_RS10870 () | 2242813..2244318 | + | 1506 | WP_001253935.1 | S49 family peptidase | - |
| JLF28_RS10875 () | 2244355..2244702 | + | 348 | WP_000256835.1 | head decoration protein | - |
| JLF28_RS10880 () | 2244760..2245788 | + | 1029 | WP_000522601.1 | major capsid protein | - |
| JLF28_RS10885 () | 2245840..2246223 | + | 384 | WP_000201501.1 | DNA-packaging protein FI | - |
| JLF28_RS10890 () | 2246216..2246569 | + | 354 | WP_001402971.1 | tail attachment protein | - |
| JLF28_RS10895 () | 2246584..2247159 | + | 576 | WP_001575631.1 | phage tail protein | - |
| JLF28_RS10900 () | 2247156..2247551 | + | 396 | WP_000683079.1 | phage minor tail U family protein | - |
| JLF28_RS10905 () | 2247559..2248311 | + | 753 | WP_000235110.1 | phage tail protein | - |
| JLF28_RS10910 () | 2248325..2248756 | + | 432 | WP_000479095.1 | phage minor tail protein G | - |
| JLF28_RS10915 () | 2248783..2249196 | + | 414 | WP_000533402.1 | phage tail assembly protein T | - |
| JLF28_RS10920 () | 2249177..2251750 | + | 2574 | WP_023909007.1 | phage tail tape measure protein | - |
| JLF28_RS10925 () | 2251747..2252076 | + | 330 | WP_000847298.1 | phage tail protein | - |
| JLF28_RS10930 () | 2252076..2252774 | + | 699 | WP_033561175.1 | phage minor tail protein L | - |
| JLF28_RS10935 () | 2252785..2253528 | + | 744 | WP_000194723.1 | C40 family peptidase | - |
| JLF28_RS10940 () | 2253474..2254106 | + | 633 | WP_122997661.1 | tail assembly protein | - |
| JLF28_RS10945 () | 2254450..2257922 | + | 3473 | Protein_2143 | host specificity protein J | - |
| JLF28_RS10950 () | 2257989..2258588 | + | 600 | WP_001228314.1 | hypothetical protein | VF |
| JLF28_RS10955 () | 2258739..2261765 | + | 3027 | WP_106493736.1 | prophage tail fiber N-terminal domain-containing protein | - |
| JLF28_RS10960 () | 2261762..2262664 | + | 903 | WP_000631346.1 | macro domain-containing protein | - |
| JLF28_RS10965 () | 2262673..2263257 | + | 585 | WP_029701058.1 | tail fiber assembly protein | - |
| JLF28_RS10970 () | 2263370..2264740 | - | 1371 | WP_029701056.1 | reverse transcriptase | - |
| JLF28_RS10975 () | 2264718..2265269 | - | 552 | WP_000545005.1 | SLATT domain-containing protein | - |
| JLF28_RS10980 () | 2265514..2265733 | - | 220 | Protein_2150 | DinI-like family protein | - |
| JLF28_RS10985 () | 2266088..2266654 | - | 567 | WP_000891625.1 | hydrolase | - |
| JLF28_RS10990 () | 2266964..2268736 | + | 1773 | WP_001258676.1 | aspartate--tRNA ligase | - |
| JLF28_RS10995 () | 2268729..2269181 | + | 453 | WP_077249130.1 | dihydroneopterin triphosphate diphosphatase | - |
| JLF28_RS11000 () | 2269210..2269950 | + | 741 | WP_000907234.1 | transcriptional regulatory protein YebC | VF |
| JLF28_RS11005 () | 2269985..2270506 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| JLF28_RS11010 () | 2270508..2271110 | - | 603 | WP_001024911.1 | YebB family permuted papain-like enzyme | - |
| JLF28_RS11015 () | 2271181..2271246 | + | 66 | WP_072093883.1 | stress response small protein YobI | - |
| JLF28_RS11020 () | 2271385..2271996 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| JLF28_RS11025 () | 2272005..2273015 | + | 1011 | WP_000568520.1 | Holliday junction branch migration DNA helicase RuvB | - |
| JLF28_RS11030 () | 2273125..2274473 | + | 1349 | WP_099156422.1 | IS3 family transposase | - |
| JLF28_RS11035 () | 2274667..2275452 | - | 786 | WP_000571478.1 | Prophage integrase IntA | VF |
| JLF28_RS11040 () | 2275449..2276204 | - | 756 | WP_000202996.1 | Molybdopterin synthase catalytic subunit | VF |
| JLF28_RS11045 () | 2276283..2277215 | + | 933 | WP_001347089.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| JLF28_RS11050 () | 2277231..2278553 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| JLF28_RS11055 () | 2278672..2279643 | + | 972 | WP_001296141.1 | GTP 3',8-cyclase | VF |
| JLF28_RS11060 () | 2279775..2281217 | - | 1443 | WP_000091149.1 | pyruvate kinase | - |
| JLF28_RS11065 () | 2281345..2282214 | - | 870 | WP_001056695.1 | DNA-binding transcriptional regulator HexR | - |
| JLF28_RS11070 () | 2282552..2284027 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| JLF28_RS11075 () | 2284262..2286073 | + | 1812 | WP_001069461.1 | phosphogluconate dehydratase | - |
| JLF28_RS11080 () | 2286110..2286751 | + | 642 | WP_000800503.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| JLF28_RS11085 () | 2286807..2287985 | - | 1179 | WP_000173466.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JLF28_RS11090 () | 2288119..2288409 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| JLF28_RS11095 () | 2288476..2288832 | + | 357 | WP_001295500.1 | protein YebF | - |
| JLF28_RS11100 () | 2289159..2289818 | + | 660 | WP_000024724.1 | tellurite resistance TerB family protein | - |
| JLF28_RS11105 () | 2290027..2292087 | + | 2061 | WP_000936925.1 | oligopeptidase B | - |
| JLF28_RS11110 () | 2292084..2292746 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JLF28_RS11115 () | 2292770..2293426 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| JLF28_RS11120 () | 2293528..2293758 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLF28_RS11125 () | 2293897..2294271 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JLF28_RS11130 () | 2294275..2295147 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| JLF28_RS11135 () | 2295160..2295501 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - () | 2295531..2295799 | - | 269 | - | - | Antitoxin Detail |
| - () | 2295659..2295761 | + | 103 | - | - | Toxin Detail |
| JLF28_RS11140 () | 2295896..2296552 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| JLF28_RS11145 () | 2296553..2296744 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JLF28_RS11150 () | 2296849..2297085 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JLF28_RS11155 () | 2297202..2298641 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JLF28_RS11160 () | 2298721..2301354 | - | 2634 | WP_001298452.1 | hypothetical protein | VF |
| JLF28_RS11165 () | 2301323..2302606 | - | 1284 | WP_001531756.1 | membrane integrity lipid transport subunit YebS | - |
| JLF28_RS11170 () | 2302736..2303233 | + | 498 | WP_001029106.1 | L-methionine (R)-S-oxide reductase | - |
| JLF28_RS11175 () | 2303330..2304028 | + | 699 | WP_000431388.1 | RNA chaperone ProQ | - |
| JLF28_RS11180 () | 2304048..2306096 | + | 2049 | WP_001055794.1 | carboxy terminal-processing peptidase | - |
| JLF28_RS11185 () | 2306288..2307169 | + | 882 | WP_000984517.1 | protease HtpX | - |
| JLF28_RS11190 () | 2307215..2308588 | - | 1374 | WP_001296135.1 | MFS transporter | - |
| JLF28_RS11195 () | 2308765..2309556 | + | 792 | WP_001262185.1 | DNA-binding transcriptional regulator KdgR | - |
| JLF28_RS11200 () | 2309700..2309939 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| JLF28_RS11205 () | 2310098..2310241 | + | 144 | WP_000714544.1 | PhoP/PhoQ regulator MgrB | - |
| JLF28_RS11210 () | 2310316..2310603 | + | 288 | WP_001006866.1 | YebO family protein | - |
| JLF28_RS11215 () | 2311273..2311416 | + | 144 | WP_001295496.1 | YobF family protein | - |
| JLF28_RS11220 () | 2311429..2311638 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| JLF28_RS11225 () | 2311804..2312613 | + | 810 | WP_000010096.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| JLF28_RS11230 () | 2312610..2313176 | - | 567 | Protein_2200 | manganese efflux pump MntP | - |
| JLF28_RS11235 () | 2313605..2314063 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| JLF28_RS11240 () | 2314118..2314969 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| JLF28_RS11245 () | 2314982..2315782 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|