Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2295531..2295799 | Replicon | chromosome |
| Accession | NZ_AP022525 | ||
| Organism | Escherichia coli strain THO-003 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2295659..2295761 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2295531..2295799 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF28_RS11110 | 2292084..2292746 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JLF28_RS11115 | 2292770..2293426 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| JLF28_RS11120 | 2293528..2293758 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JLF28_RS11125 | 2293897..2294271 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JLF28_RS11130 | 2294275..2295147 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| JLF28_RS11135 | 2295160..2295501 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2295531..2295799 | - | 269 | - | - | Antitoxin |
| - | 2295659..2295761 | + | 103 | - | - | Toxin |
| JLF28_RS11140 | 2295896..2296552 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| JLF28_RS11145 | 2296553..2296744 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JLF28_RS11150 | 2296849..2297085 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JLF28_RS11155 | 2297202..2298641 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2214983..2311638 | 96655 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T35918 NZ_AP022525:2295659-2295761 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT35918 NZ_AP022525:c2295799-2295531 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
