MGE detailed information
MGE type: Conjugative plasmid MGE length: 118786 bp
Accession: NZ_AP022496 Location: 1..118786 Organism: Citrobacter portucalensis strain STN0717-36 Replicon: plasmid pSTN0717-36-2
Accession: NZ_AP022496 Location: 1..118786 Organism: Citrobacter portucalensis strain STN0717-36 Replicon: plasmid pSTN0717-36-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF47_RS24960 () | 35..109 | + | 75 | WP_071594637.1 | RepA leader peptide Tap | - |
| JLF47_RS24965 () | 90..965 | + | 876 | WP_200923501.1 | incFII family plasmid replication initiator RepA | - |
| JLF47_RS24970 () | 2180..3127 | + | 948 | WP_023356254.1 | IS30 family transposase ISSde3 | Transposase |
| JLF47_RS24975 () | 3128..3877 | + | 750 | WP_200932085.1 | NYN domain-containing protein | - |
| JLF47_RS24980 () | 3897..4496 | + | 600 | WP_025760201.1 | DUF2913 family protein | - |
| JLF47_RS24985 () | 4621..6636 | - | 2016 | Protein_5 | Tn3 family transposase ISEc63 | Transposase |
| JLF47_RS24990 () | 6950..7333 | - | 384 | Protein_6 | IS110 family transposase IS5075 | Transposase |
| JLF47_RS24995 () | 7853..8284 | + | 432 | WP_001025244.1 | hypothetical protein | - |
| JLF47_RS25000 () | 8368..8697 | + | 330 | WP_052909321.1 | hypothetical protein | - |
| JLF47_RS25005 () | 8817..10220 | + | 1404 | WP_001567368.1 | ISNCY family transposase ISKpn21 | Transposase |
| JLF47_RS25010 () | 10249..10881 | - | 633 | WP_001567369.1 | hypothetical protein | - |
| JLF47_RS25015 () | 11051..11314 | + | 264 | WP_113416113.1 | ISAs1 family transposase | - |
| JLF47_RS25020 () | 11509..12528 | + | 1020 | WP_057699135.1 | acyltransferase | - |
| JLF47_RS25025 () | 12570..12668 | + | 99 | WP_077785049.1 | hypothetical protein | - |
| JLF47_RS25030 () | 12856..13125 | + | 270 | WP_039062313.1 | hypothetical protein | - |
| JLF47_RS25035 () | 13172..13438 | - | 267 | WP_000262326.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JLF47_RS25040 () | 13422..13646 | - | 225 | WP_000879771.1 | TraY domain-containing protein | Antitoxin Detail |
| JLF47_RS25045 () | 14553..14753 | - | 201 | WP_023139298.1 | antitoxin VbhA family protein | - |
| JLF47_RS25050 () | 15574..16578 | - | 1005 | WP_000427614.1 | IS110 family transposase IS5075 | Transposase |
| JLF47_RS25055 () | 16643..17170 | - | 528 | WP_044258217.1 | hypothetical protein | - |
| JLF47_RS25060 () | 17199..17909 | - | 711 | WP_004393997.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| JLF47_RS25065 () | 17911..19116 | - | 1206 | WP_022652303.1 | ABC transporter permease | - |
| JLF47_RS25070 () | 19113..20264 | - | 1152 | WP_016236501.1 | efflux RND transporter periplasmic adaptor subunit | - |
| JLF47_RS25075 () | 20261..20869 | - | 609 | WP_049015493.1 | TetR/AcrR family transcriptional regulator | - |
| JLF47_RS25080 () | 21057..22061 | + | 1005 | WP_000427614.1 | IS110 family transposase IS5075 | Transposase |
| JLF47_RS25085 () | 22521..22841 | + | 321 | WP_001137910.1 | DUF134 domain-containing protein | - |
| JLF47_RS25090 () | 22816..23277 | + | 462 | WP_000626969.1 | hypothetical protein | - |
| JLF47_RS25095 () | 23438..23875 | + | 438 | WP_016241611.1 | PaaI family thioesterase | - |
| JLF47_RS25100 () | 23990..24466 | + | 477 | WP_000043177.1 | hypothetical protein | VF |
| JLF47_RS25105 () | 24771..25121 | - | 351 | WP_000928911.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| JLF47_RS25110 () | 25283..26941 | + | 1659 | WP_025760366.1 | FAD-dependent oxidoreductase | - |
| JLF47_RS25115 () | 27205..27846 | - | 642 | WP_057064890.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| JLF47_RS25120 () | 28014..31001 | + | 2988 | WP_049246514.1 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| JLF47_RS25125 () | 31025..32791 | + | 1767 | Protein_33 | topoisomerase C-terminal repeat-containing protein | - |
| JLF47_RS25130 () | 32803..33252 | + | 450 | WP_040115250.1 | H-NS histone family protein | - |
| JLF47_RS25135 () | 33624..34688 | + | 1065 | WP_200932079.1 | dTDP-glucose 4,6-dehydratase 2 | VF |
| JLF47_RS25140 () | 34702..35568 | + | 867 | WP_200932080.1 | Glucose-1-phosphate thymidylyltransferase 2 | VF |
| JLF47_RS25145 () | 35600..36490 | + | 891 | WP_200932081.1 | dTDP-4-dehydrorhamnose reductase | - |
| JLF47_RS25150 () | 36505..37059 | + | 555 | WP_039022299.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | VF |
| JLF47_RS25155 () | 37146..37976 | + | 831 | WP_200932082.1 | glycosyltransferase family 2 protein | - |
| JLF47_RS25160 () | 38005..38838 | + | 834 | WP_015958691.1 | ABC transporter permease | - |
| JLF47_RS25165 () | 38828..40159 | + | 1332 | WP_200932083.1 | Teichoic acids export ATP-binding protein TagH | VF |
| JLF47_RS25170 () | 40156..43722 | + | 3567 | WP_200932084.1 | hypothetical protein | VF |
| JLF47_RS25175 () | 43940..44364 | + | 425 | Protein_43 | IS1 family transposase | - |
| JLF47_RS25180 () | 44398..46368 | - | 1971 | Protein_44 | Tn3 family transposase ISEc63 | Transposase |
| JLF47_RS25185 () | 46412..47116 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| JLF47_RS25190 () | 47408..47977 | - | 570 | WP_001749988.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| JLF47_RS25195 () | 48217..49431 | + | 1215 | WP_004098817.1 | type II site-specific deoxyribonuclease | - |
| JLF47_RS25200 () | 49465..50868 | - | 1404 | WP_072094655.1 | DNA cytosine methyltransferase | - |
| JLF47_RS25205 () | 51007..51704 | - | 698 | Protein_49 | IS1 family transposase IS1R | Transposase |
| JLF47_RS25210 () | 52094..53023 | - | 930 | WP_040113343.1 | Recombination-promoting nuclease RpnA | VF |
| JLF47_RS25215 () | 53169..53369 | - | 201 | WP_045358108.1 | hypothetical protein | - |
| JLF47_RS25220 () | 53423..54055 | - | 633 | WP_042005150.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| JLF47_RS25225 () | 54549..55415 | + | 867 | WP_001525581.1 | AAA family ATPase | - |
| JLF47_RS25230 () | 55415..56446 | + | 1032 | WP_200923505.1 | ParB/RepB/Spo0J family partition protein | - |
| JLF47_RS25235 () | 56446..56883 | + | 438 | WP_000843283.1 | hypothetical protein | - |
| JLF47_RS25240 () | 56880..57203 | + | 324 | WP_042078038.1 | hypothetical protein | - |
| JLF47_RS25245 () | 57253..58626 | + | 1374 | WP_058655914.1 | RES family NAD+ phosphorylase | - |
| JLF47_RS25250 () | 58675..59949 | - | 1275 | WP_200923506.1 | Y-family DNA polymerase | - |
| JLF47_RS25255 () | 59949..60371 | - | 423 | WP_047359677.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JLF47_RS25260 () | 60551..61222 | - | 672 | WP_047359678.1 | SOS response-associated peptidase family protein | - |
| JLF47_RS25265 () | 61574..62257 | + | 684 | WP_200923484.1 | DNA methylase | - |
| JLF47_RS25270 () | 62254..62478 | + | 225 | WP_047359680.1 | hypothetical protein | - |
| JLF47_RS25275 () | 62527..62943 | + | 417 | WP_200923485.1 | DUF1380 family protein | - |
| JLF47_RS25280 () | 63354..63860 | + | 507 | WP_200923486.1 | antirestriction protein ArdA | - |
| JLF47_RS25285 () | 63879..64196 | - | 318 | WP_200923487.1 | hypothetical protein | - |
| JLF47_RS25290 () | 64409..64558 | - | 150 | WP_200932077.1 | hypothetical protein | - |
| JLF47_RS25295 () | 64629..64859 | + | 231 | WP_008324190.1 | DUF905 domain-containing protein | - |
| JLF47_RS25300 () | 64933..66942 | + | 2010 | WP_200923488.1 | ParB/RepB/Spo0J family partition protein | - |
| JLF47_RS25305 () | 66985..67416 | + | 432 | WP_200923489.1 | conjugation system SOS inhibitor PsiB | - |
| JLF47_RS25310 () | 67413..68141 | + | 729 | WP_200923490.1 | plasmid SOS inhibition protein A | - |
| JLF47_RS25315 () | 68138..68461 | + | 324 | WP_200923491.1 | theronine dehydrogenase | - |
| JLF47_RS25320 () | 68523..68897 | + | 375 | WP_200923492.1 | hypothetical protein | - |
| JLF47_RS25325 () | 69543..69917 | + | 375 | WP_032637252.1 | hypothetical protein | - |
| JLF47_RS25330 () | 69971..70258 | + | 288 | WP_200923493.1 | hypothetical protein | - |
| JLF47_RS25335 () | 70305..70649 | + | 345 | WP_047359689.1 | hypothetical protein | - |
| JLF47_RS25340 () | 70735..70998 | + | 264 | WP_008324174.1 | hypothetical protein | - |
| JLF47_RS25345 () | 71041..71871 | + | 831 | WP_200923494.1 | N-6 DNA methylase | - |
| JLF47_RS25350 () | 72078..72307 | - | 230 | Protein_78 | hypothetical protein | - |
| JLF47_RS25355 () | 72498..73028 | + | 531 | WP_200923495.1 | antirestriction protein | - |
| JLF47_RS25360 () | 73075..73551 | - | 477 | WP_200923496.1 | hypothetical protein | VF |
| JLF47_RS25365 () | 73983..74378 | + | 396 | WP_040218546.1 | relaxosome protein TraM | - |
| JLF47_RS25370 () | 74563..75267 | + | 705 | WP_071667437.1 | hypothetical protein | - |
| JLF47_RS25375 () | 75376..75750 | + | 375 | WP_040218544.1 | TraY domain-containing protein | - |
| JLF47_RS25380 () | 75816..76166 | + | 351 | WP_071667438.1 | type IV conjugative transfer system pilin TraA | - |
| JLF47_RS25385 () | 76317..76622 | + | 306 | WP_008324160.1 | type IV conjugative transfer system protein TraL | - |
| JLF47_RS25390 () | 76637..77203 | + | 567 | WP_008324158.1 | type IV conjugative transfer system protein TraE | - |
| JLF47_RS25395 () | 77190..77933 | + | 744 | WP_008324157.1 | type-F conjugative transfer system secretin TraK | - |
| JLF47_RS25400 () | 77920..79314 | + | 1395 | WP_008324156.1 | conjugal transfer protein TraB | - |
| JLF47_RS25405 () | 79336..79875 | + | 540 | WP_008324154.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JLF47_RS25410 () | 79995..80219 | + | 225 | WP_008324141.1 | TraR/DksA C4-type zinc finger protein | - |
| JLF47_RS25415 () | 80223..80408 | + | 186 | WP_008324139.1 | hypothetical protein | - |
| JLF47_RS25420 () | 80392..80793 | + | 402 | WP_008324137.1 | hypothetical protein | - |
| JLF47_RS25425 () | 80783..81349 | + | 567 | WP_008324135.1 | conjugal transfer protein TraP | - |
| JLF47_RS25430 () | 81342..83972 | + | 2631 | WP_008324134.1 | type IV secretion system protein TraC | - |
| JLF47_RS25435 () | 83969..84316 | + | 348 | WP_008324133.1 | type-F conjugative transfer system protein TrbI | - |
| JLF47_RS25440 () | 84316..84963 | + | 648 | WP_008324132.1 | type-F conjugative transfer system protein TraW | - |
| JLF47_RS25445 () | 84966..85952 | + | 987 | WP_032160671.1 | conjugal transfer pilus assembly protein TraU | - |
| JLF47_RS25450 () | 85969..86598 | + | 630 | WP_008324130.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JLF47_RS25455 () | 86595..88448 | + | 1854 | WP_022652255.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JLF47_RS25460 () | 88480..88668 | + | 189 | WP_008324128.1 | hypothetical protein | - |
| JLF47_RS25465 () | 88705..89448 | + | 744 | WP_060446849.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JLF47_RS25470 () | 89465..89713 | + | 249 | WP_008324126.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JLF47_RS25475 () | 89703..90248 | + | 546 | WP_060446834.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JLF47_RS25480 () | 90245..91621 | + | 1377 | WP_086551404.1 | conjugal transfer protein TraH | - |
| JLF47_RS25485 () | 91621..94443 | + | 2823 | WP_200923497.1 | conjugal transfer mating pair stabilization protein TraG | - |
| JLF47_RS25490 () | 94462..94959 | + | 498 | WP_063132060.1 | hypothetical protein | - |
| JLF47_RS25495 () | 95035..95760 | + | 726 | WP_140157827.1 | complement resistance protein TraT | - |
| JLF47_RS25500 () | 96132..98357 | + | 2226 | WP_200923498.1 | type IV conjugative transfer system coupling protein TraD | - |
| JLF47_RS25505 () | 98357..103597 | + | 5241 | WP_200923499.1 | Multifunctional conjugation protein TraI | Relaxase |
| JLF47_RS25510 () | 103599..103706 | + | 108 | Protein_110 | conjugal transfer protein | - |
| JLF47_RS25515 () | 103981..104334 | + | 354 | WP_001114073.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| JLF47_RS25520 () | 104382..104744 | + | 363 | WP_000783215.1 | arsenite efflux transporter metallochaperone ArsD | - |
| JLF47_RS25525 () | 104762..106513 | + | 1752 | WP_001556710.1 | arsenite efflux transporter ATPase subunit ArsA | - |
| JLF47_RS25530 () | 106562..107851 | + | 1290 | WP_000922630.1 | arsenite efflux transporter membrane subunit ArsB | - |
| JLF47_RS25535 () | 107864..108289 | + | 426 | WP_000065758.1 | glutaredoxin-dependent arsenate reductase | - |
| JLF47_RS25540 () | 108320..108724 | - | 405 | WP_004118313.1 | arsenic transporter ATPase | - |
| JLF47_RS25545 () | 108733..109305 | - | 573 | WP_001556711.1 | Tn3 family transposase ISEc63 | Transposase |
| JLF47_RS25550 () | 109469..112477 | + | 3009 | WP_012817690.1 | Tn3 family transposase ISEc63 | Transposase |
| JLF47_RS25555 () | 112529..113146 | + | 618 | WP_200932086.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| JLF47_RS25560 () | 113213..113932 | + | 720 | WP_008324922.1 | fertility inhibition protein FinO | - |
| JLF47_RS25565 () | 113925..114716 | + | 792 | WP_200932078.1 | DsbA family protein | - |
| JLF47_RS25570 () | 114920..115192 | + | 273 | WP_057069530.1 | hypothetical protein | - |
| JLF47_RS25575 () | 115284..115604 | + | 321 | WP_071667450.1 | hypothetical protein | - |
| JLF47_RS25580 () | 115601..116209 | + | 609 | WP_071667451.1 | DUF2726 domain-containing protein | - |
| JLF47_RS25585 () | 116431..116973 | + | 543 | WP_200923500.1 | hypothetical protein | - |
| JLF47_RS25590 () | 116970..117278 | + | 309 | WP_071667453.1 | hypothetical protein | - |
| JLF47_RS25595 () | 117406..117612 | + | 207 | WP_058670716.1 | hypothetical protein | - |
| JLF47_RS25600 () | 117624..118178 | + | 555 | WP_071667454.1 | Phospholipase D | VF |
| JLF47_RS25605 () | 118330..118587 | + | 258 | WP_057064915.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|