MGE detailed information
MGE type: Conjugative plasmid MGE length: 82100 bp
Accession: NZ_AP022401 Location: 1..82100 Organism: Citrobacter portucalensis strain STW0522-30 Replicon: plasmid pSTW0522-30-2
Accession: NZ_AP022401 Location: 1..82100 Organism: Citrobacter portucalensis strain STW0522-30 Replicon: plasmid pSTW0522-30-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLF43_RS25025 () | 32..109 | + | 78 | WP_011201829.1 | RepA leader peptide Tap | - |
| JLF43_RS25030 () | 90..965 | + | 876 | WP_024191793.1 | incFII family plasmid replication initiator RepA | - |
| JLF43_RS25035 () | 1954..2859 | + | 906 | WP_032637320.1 | hypothetical protein | - |
| JLF43_RS25040 () | 2982..3581 | + | 600 | WP_032637323.1 | DUF2913 family protein | - |
| JLF43_RS25045 () | 3892..4182 | - | 291 | WP_000143805.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JLF43_RS25050 () | 4172..4426 | - | 255 | WP_000104338.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| JLF43_RS25055 () | 4583..5293 | - | 711 | WP_032637325.1 | tyrosine-type recombinase/integrase | - |
| JLF43_RS25060 () | 5380..5775 | - | 396 | WP_032637393.1 | hypothetical protein | - |
| JLF43_RS25065 () | 6782..7762 | - | 981 | WP_033146059.1 | IS5 family transposase ISKpn26 | Transposase |
| JLF43_RS25070 () | 9011..9778 | + | 768 | WP_015583927.1 | Teichoic acid translocation permease protein TagG | VF |
| JLF43_RS25075 () | 9778..10548 | + | 771 | WP_200927137.1 | Teichoic acids export ATP-binding protein TagH | VF |
| JLF43_RS25080 () | 10553..12445 | + | 1893 | WP_023312621.1 | General stress protein A | VF |
| JLF43_RS25085 () | 12464..13618 | + | 1155 | WP_016247610.1 | UDP-galactopyranose mutase | VF |
| JLF43_RS25090 () | 13615..14505 | + | 891 | WP_200923079.1 | hypothetical protein | VF |
| JLF43_RS25095 () | 14506..15651 | + | 1146 | WP_023157139.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | VF |
| JLF43_RS25100 () | 15773..17061 | + | 1289 | Protein_15 | putative glycosyltransferase EpsJ | VF |
| JLF43_RS25105 () | 17055..17752 | - | 698 | Protein_16 | IS1 family transposase | - |
| JLF43_RS25110 () | 17809..18027 | - | 219 | Protein_17 | transposase | - |
| JLF43_RS25115 () | 18235..19374 | + | 1140 | WP_024250307.1 | ISAs1 family transposase IS1358 | Transposase |
| JLF43_RS25120 () | 19454..19831 | + | 378 | WP_004198893.1 | GtrA family protein | - |
| JLF43_RS25125 () | 19828..20808 | + | 981 | WP_004198905.1 | putative glycosyltransferase YkoT | VF |
| JLF43_RS25130 () | 20903..21883 | + | 981 | WP_000082736.1 | IS5 family transposase ISEc68 | Transposase |
| JLF43_RS25135 () | 22185..23579 | + | 1395 | WP_199557988.1 | glucosyltransferase domain-containing protein | - |
| JLF43_RS25140 () | 23677..24405 | + | 729 | Protein_23 | IS5 family transposase ISEc68 | Transposase |
| JLF43_RS25145 () | 24474..25454 | + | 981 | WP_200923080.1 | IS5 family transposase ISEc68 | Transposase |
| JLF43_RS25150 () | 25591..27042 | + | 1452 | WP_200923081.1 | glucosyl transferase GtrII family protein | - |
| JLF43_RS25155 () | 27292..28147 | - | 856 | Protein_26 | IS5 family transposase IS903B | Transposase |
| JLF43_RS25160 () | 28123..28799 | + | 677 | Protein_27 | IS3 family transposase | - |
| JLF43_RS25165 () | 29472..30980 | + | 1509 | WP_033147074.1 | group II intron reverse transcriptase/maturase | - |
| JLF43_RS25170 () | 31061..31537 | + | 477 | Protein_29 | IS3 family transposase ISEhe3 | Transposase |
| JLF43_RS25175 () | 31606..32586 | + | 981 | WP_033146059.1 | IS5 family transposase ISKpn26 | Transposase |
| JLF43_RS25180 () | 32775..33479 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| JLF43_RS25185 () | 33500..33837 | + | 338 | Protein_32 | IS5 family transposase IS5D | Transposase |
| JLF43_RS25190 () | 34044..34604 | + | 561 | WP_050597363.1 | hypothetical protein | - |
| JLF43_RS25195 () | 34659..34847 | - | 189 | WP_032637347.1 | hypothetical protein | - |
| JLF43_RS25200 () | 34901..35194 | - | 294 | WP_025760326.1 | hypothetical protein | - |
| JLF43_RS25205 () | 35195..36046 | - | 852 | WP_045265524.1 | hypothetical protein | VF |
| JLF43_RS25210 () | 36236..36436 | - | 201 | WP_032637350.1 | hypothetical protein | - |
| JLF43_RS25215 () | 36935..37612 | + | 678 | WP_032637352.1 | DNA methylase | - |
| JLF43_RS25220 () | 37609..37833 | + | 225 | WP_041907514.1 | hypothetical protein | - |
| JLF43_RS25225 () | 37889..38305 | + | 417 | WP_032637354.1 | DUF1380 family protein | - |
| JLF43_RS25230 () | 38707..39213 | + | 507 | WP_032637356.1 | antirestriction protein ArdA | - |
| JLF43_RS25235 () | 39203..39571 | - | 369 | WP_032637358.1 | hypothetical protein | - |
| JLF43_RS25240 () | 40004..40234 | + | 231 | WP_032637359.1 | DUF905 domain-containing protein | - |
| JLF43_RS25245 () | 40301..42310 | + | 2010 | WP_032637361.1 | ParB/RepB/Spo0J family partition protein | - |
| JLF43_RS25250 () | 42353..42784 | + | 432 | WP_032637363.1 | conjugation system SOS inhibitor PsiB | - |
| JLF43_RS25255 () | 42781..43509 | + | 729 | WP_032637364.1 | plasmid SOS inhibition protein A | - |
| JLF43_RS25260 () | 43506..43829 | + | 324 | WP_057069613.1 | hypothetical protein | - |
| JLF43_RS25265 () | 43891..44265 | + | 375 | WP_032637367.1 | hypothetical protein | - |
| JLF43_RS25270 () | 44912..45286 | + | 375 | WP_032637252.1 | hypothetical protein | - |
| JLF43_RS25275 () | 45340..45627 | + | 288 | WP_032637255.1 | hypothetical protein | - |
| JLF43_RS25280 () | 45674..46018 | + | 345 | WP_032637258.1 | hypothetical protein | - |
| JLF43_RS25285 () | 46104..46367 | + | 264 | WP_032637261.1 | hypothetical protein | - |
| JLF43_RS25290 () | 46410..47240 | + | 831 | WP_032637274.1 | type I restriction-modification system subunit M | - |
| JLF43_RS25295 () | 47447..47617 | - | 171 | WP_165586833.1 | hypothetical protein | - |
| JLF43_RS25300 () | 47867..48397 | + | 531 | WP_032637275.1 | antirestriction protein | - |
| JLF43_RS25305 () | 48446..48922 | - | 477 | WP_032637277.1 | hypothetical protein | VF |
| JLF43_RS25310 () | 49354..49746 | + | 393 | WP_008324167.1 | relaxosome protein TraM | - |
| JLF43_RS25315 () | 49935..50624 | + | 690 | WP_200927125.1 | PAS fold family protein | - |
| JLF43_RS25320 () | 50711..50935 | + | 225 | WP_008324165.1 | TraY domain-containing protein | - |
| JLF43_RS25325 () | 50993..51343 | + | 351 | WP_016247536.1 | type IV conjugative transfer system pilin TraA | - |
| JLF43_RS25330 () | 51493..51798 | + | 306 | WP_008324160.1 | type IV conjugative transfer system protein TraL | - |
| JLF43_RS25335 () | 51813..52379 | + | 567 | WP_025759824.1 | type IV conjugative transfer system protein TraE | - |
| JLF43_RS25340 () | 52366..53109 | + | 744 | WP_008324157.1 | type-F conjugative transfer system secretin TraK | - |
| JLF43_RS25345 () | 53096..54490 | + | 1395 | WP_032637284.1 | conjugal transfer protein TraB | - |
| JLF43_RS25350 () | 54512..55051 | + | 540 | WP_032637286.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JLF43_RS25355 () | 55171..55395 | + | 225 | WP_008324141.1 | TraR/DksA C4-type zinc finger protein | - |
| JLF43_RS25360 () | 55399..55584 | + | 186 | WP_008324139.1 | hypothetical protein | - |
| JLF43_RS25365 () | 55568..55969 | + | 402 | WP_008324137.1 | hypothetical protein | - |
| JLF43_RS25370 () | 55959..56525 | + | 567 | WP_008324135.1 | conjugal transfer protein TraP | - |
| JLF43_RS25375 () | 56518..59148 | + | 2631 | WP_008324134.1 | type IV secretion system protein TraC | - |
| JLF43_RS25380 () | 59145..59492 | + | 348 | WP_008324133.1 | type-F conjugative transfer system protein TrbI | - |
| JLF43_RS25385 () | 59492..60139 | + | 648 | WP_200927127.1 | type-F conjugative transfer system protein TraW | - |
| JLF43_RS25390 () | 60142..61128 | + | 987 | WP_200927139.1 | conjugal transfer pilus assembly protein TraU | - |
| JLF43_RS25395 () | 61145..61774 | + | 630 | WP_032637288.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JLF43_RS25400 () | 61771..63624 | + | 1854 | WP_032637290.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JLF43_RS25405 () | 63656..63844 | + | 189 | WP_008324128.1 | hypothetical protein | - |
| JLF43_RS25410 () | 63875..64624 | + | 750 | WP_032637292.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JLF43_RS25415 () | 64641..64889 | + | 249 | WP_011901838.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JLF43_RS25420 () | 64879..65424 | + | 546 | WP_032637295.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JLF43_RS25425 () | 65421..66797 | + | 1377 | WP_086538482.1 | conjugal transfer protein TraH | - |
| JLF43_RS25430 () | 66797..69616 | + | 2820 | WP_032637300.1 | conjugal transfer mating pair stabilization protein TraG | - |
| JLF43_RS25435 () | 69641..70114 | + | 474 | WP_032637302.1 | hypothetical protein | - |
| JLF43_RS25440 () | 70167..70895 | + | 729 | WP_131797574.1 | hypothetical protein | - |
| JLF43_RS25445 () | 71014..73245 | + | 2232 | WP_058654345.1 | type IV conjugative transfer system coupling protein TraD | - |
| JLF43_RS25450 () | 73245..78485 | + | 5241 | WP_200927134.1 | Multifunctional conjugation protein TraI | Relaxase |
| JLF43_RS25455 () | 78487..79224 | + | 738 | WP_008324912.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| JLF43_RS25460 () | 79291..80010 | + | 720 | WP_008324922.1 | fertility inhibition protein FinO | - |
| JLF43_RS25465 () | 80003..80803 | + | 801 | WP_064756661.1 | DsbA family protein | - |
| JLF43_RS25470 () | 80951..81496 | + | 546 | WP_032637316.1 | Phospholipase D | VF |
| JLF43_RS25475 () | 81648..81908 | + | 261 | WP_032637318.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|