MGE detailed information
MGE type: Prophage MGE length: 46842 bp
Accession: NZ_AP022351 Location: 292523..339364 Organism: Escherichia coli strain E138 Replicon: chromosome
Accession: NZ_AP022351 Location: 292523..339364 Organism: Escherichia coli strain E138 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GR930_RS01400 () | 288575..289279 | - | 705 | WP_148725207.1 | type-F conjugative transfer system secretin TraK | - |
| GR930_RS01405 () | 289290..289856 | - | 567 | WP_000399791.1 | type IV conjugative transfer system protein TraE | - |
| GR930_RS01410 () | 289878..290189 | - | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| GR930_RS01415 () | 290194..290556 | - | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| GR930_RS01420 () | 290590..290817 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| GR930_RS01425 () | 290905..291582 | - | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| GR930_RS01430 () | 291716..292099 | - | 384 | WP_001151566.1 | relaxosome protein TraM | - |
| GR930_RS01435 () | 292430..293032 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| GR930_RS01440 () | 293329..294150 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| GR930_RS01445 () | 294269..294556 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| GR930_RS23245 () | 294581..294787 | - | 207 | WP_000275859.1 | hypothetical protein | - |
| GR930_RS01455 () | 295478..295636 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 295680..295720 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 295680..295720 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 295680..295720 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 295680..295720 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| GR930_RS01460 () | 295747..297117 | - | 1371 | Protein_273 | IS3-like element IS150 family transposase | - |
| - () | 297165..297351 | - | 187 | NuclAT_0 | - | - |
| - () | 297165..297351 | - | 187 | NuclAT_0 | - | - |
| - () | 297165..297351 | - | 187 | NuclAT_0 | - | - |
| - () | 297165..297351 | - | 187 | NuclAT_0 | - | - |
| GR930_RS01465 () | 297363..298082 | - | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| GR930_RS01470 () | 298079..298513 | - | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| GR930_RS01475 () | 298568..300526 | - | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| GR930_RS01480 () | 300592..300825 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| GR930_RS01485 () | 300888..301427 | - | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
| GR930_RS01495 () | 302070..302306 | - | 237 | WP_032153960.1 | hypothetical protein | - |
| GR930_RS01500 () | 302332..302895 | - | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| GR930_RS01505 () | 302943..304304 | - | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| GR930_RS01510 () | 304356..304586 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| GR930_RS01515 () | 305621..305812 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| GR930_RS01520 () | 305809..306231 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| GR930_RS01525 () | 306278..306580 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| GR930_RS01535 () | 307120..307896 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| GR930_RS01540 () | 307947..308381 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| GR930_RS01545 () | 308395..308616 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| GR930_RS01550 () | 308617..309300 | - | 684 | WP_000086185.1 | DNA methylase | - |
| GR930_RS01555 () | 309377..309681 | - | 305 | Protein_290 | hypothetical protein | - |
| GR930_RS01560 () | 309685..310587 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| GR930_RS01565 () | 311454..312425 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| GR930_RS01570 () | 312425..313591 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| GR930_RS01575 () | 314179..314934 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| GR930_RS01580 () | 315708..316514 | - | 807 | WP_000016982.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| GR930_RS01585 () | 316515..316820 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| GR930_RS01590 () | 316822..317040 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| GR930_RS01595 () | 317748..318743 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| GR930_RS01600 () | 318747..319679 | + | 933 | WP_163407922.1 | hypothetical protein | - |
| GR930_RS01605 () | 319887..321503 | - | 1617 | Protein_300 | IS66 family transposase ISEc23 | Transposase |
| GR930_RS01610 () | 321544..321881 | - | 338 | Protein_301 | IS66 family transposase ISEc23 | Transposase |
| GR930_RS01615 () | 321878..322303 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| GR930_RS01620 () | 322374..323053 | - | 680 | Protein_303 | IS1 family transposase IS1R | Transposase |
| GR930_RS01625 () | 323267..326383 | - | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
| GR930_RS01630 () | 326505..327776 | - | 1272 | WP_023142242.1 | restriction endonuclease subunit S | - |
| GR930_RS01635 () | 327773..329329 | - | 1557 | WP_001617892.1 | type I restriction-modification system subunit M | - |
| GR930_RS01640 () | 329512..329733 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| GR930_RS01645 () | 329733..330113 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| GR930_RS01650 () | 330118..330297 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| GR930_RS01655 () | 330325..330684 | + | 360 | WP_001513660.1 | hypothetical protein | - |
| GR930_RS01660 () | 330608..331021 | + | 414 | Protein_311 | IS3 family transposase ISLad1 | Transposase |
| GR930_RS01665 () | 330971..331288 | - | 318 | WP_001513659.1 | hypothetical protein | - |
| GR930_RS01670 () | 331516..331932 | - | 417 | Protein_313 | IS5 family transposase IS5D | Transposase |
| GR930_RS01675 () | 331987..332691 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| GR930_RS01685 () | 334293..335321 | + | 1029 | WP_001016670.1 | UDP-N-acetylmuramate dehydrogenase | - |
| GR930_RS01690 () | 335318..336283 | + | 966 | WP_000654592.1 | bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA | - |
| GR930_RS01695 () | 336312..337262 | - | 951 | WP_000023081.1 | type I pantothenate kinase | - |
| GR930_RS01720 () | 338180..339364 | + | 1185 | WP_000031784.1 | Sulfate adenylyltransferase subunit 1 | VF |
| GR930_RS01725 () | 339594..339977 | + | 384 | WP_001275702.1 | preprotein translocase subunit SecE | - |
| GR930_RS01730 () | 339979..340524 | + | 546 | WP_001287521.1 | transcription termination/antitermination protein NusG | - |
| GR930_RS01735 () | 340683..341111 | + | 429 | WP_001085926.1 | 50S ribosomal protein L11 | - |
| GR930_RS01740 () | 341115..341819 | + | 705 | WP_001096687.1 | 50S ribosomal protein L1 | - |
| GR930_RS01745 () | 342111..342608 | + | 498 | WP_001207201.1 | 50S ribosomal protein L10 | - |
| GR930_RS01750 () | 342675..343040 | + | 366 | WP_000028878.1 | 50S ribosomal protein L7/L12 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|