MGE detailed information
MGE type: Genomic_island MGE length: 9357 bp
Accession: NZ_AP021894 Location: 4211462..4220818 Organism: Escherichia coli strain 2018-10-1CC Replicon: chromosome
Accession: NZ_AP021894 Location: 4211462..4220818 Organism: Escherichia coli strain 2018-10-1CC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRR23_RS20515 () | 4206623..4207924 | + | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| HRR23_RS20520 () | 4208040..4208378 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| HRR23_RS20525 () | 4208354..4210051 | + | 1698 | WP_000068928.1 | protein-disulfide reductase DsbD | - |
| HRR23_RS20530 () | 4210088..4210663 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| HRR23_RS20540 () | 4211462..4213000 | + | 1539 | WP_001187177.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| HRR23_RS20545 () | 4213366..4214700 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| HRR23_RS20550 () | 4214780..4216927 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| HRR23_RS20555 () | 4216986..4218443 | + | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| HRR23_RS20560 () | 4218680..4220197 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| HRR23_RS20565 () | 4220321..4220494 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| HRR23_RS20570 () | 4220522..4220818 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| HRR23_RS20575 () | 4221045..4221317 | - | 273 | WP_000405651.1 | N-acetyltransferase | - |
| HRR23_RS20580 () | 4221329..4221559 | - | 231 | WP_000371704.1 | (4Fe-4S)-binding protein | - |
| HRR23_RS20585 () | 4221740..4223371 | + | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| HRR23_RS20590 () | 4223368..4224087 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.005 |