MGE detailed information
MGE type: Prophage MGE length: 75257 bp
Accession: NZ_AP021893 Location: 3688363..3763619 Organism: Escherichia coli strain 2018-06-4CC Replicon: chromosome
Accession: NZ_AP021893 Location: 3688363..3763619 Organism: Escherichia coli strain 2018-06-4CC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRR20_RS17670 () | 3684951..3685907 | + | 957 | WP_000121346.1 | molybdenum cofactor insertion chaperone PaoD | - |
| HRR20_RS17675 () | 3685958..3686296 | + | 339 | Protein_3462 | LysR family transcriptional regulator | - |
| HRR20_RS17680 () | 3687114..3688328 | + | 1215 | WP_012602456.1 | type II restriction endonuclease | - |
| HRR20_RS17685 () | 3688363..3689766 | - | 1404 | WP_072095179.1 | DNA cytosine methyltransferase | - |
| HRR20_RS17690 () | 3690200..3690973 | + | 774 | WP_000355484.1 | hypothetical protein | - |
| HRR20_RS17695 () | 3691031..3691585 | - | 555 | WP_000904983.1 | site-specific DNA recombinase | - |
| HRR20_RS17700 () | 3691615..3692118 | + | 504 | WP_104769903.1 | phage tail protein | - |
| HRR20_RS17705 () | 3692118..3692720 | + | 603 | WP_053903524.1 | tail fiber assembly protein | - |
| HRR20_RS17710 () | 3692692..3693135 | - | 444 | WP_172408831.1 | tail fiber assembly protein | - |
| HRR20_RS17715 () | 3693468..3693779 | - | 312 | Protein_3470 | hypothetical protein | - |
| HRR20_RS17720 () | 3693783..3694367 | - | 585 | WP_000383554.1 | YmfQ family protein | - |
| HRR20_RS17725 () | 3694358..3695416 | - | 1059 | WP_000785308.1 | baseplate J/gp47 family protein | - |
| HRR20_RS17730 () | 3695403..3695828 | - | 426 | WP_000424745.1 | phage GP46 family protein | - |
| HRR20_RS17735 () | 3695828..3696376 | - | 549 | WP_001519515.1 | phage baseplate assembly protein V | - |
| HRR20_RS17740 () | 3696376..3697455 | - | 1080 | WP_001519514.1 | hypothetical protein | - |
| HRR20_RS17745 () | 3697452..3698780 | - | 1329 | WP_000219910.1 | DNA circularization N-terminal domain-containing protein | - |
| HRR20_RS17750 () | 3698841..3700676 | - | 1836 | WP_001519513.1 | phage tail tape measure protein | - |
| HRR20_RS17755 () | 3700818..3701087 | - | 270 | WP_000661054.1 | phage tail assembly protein | - |
| HRR20_RS17760 () | 3701087..3701443 | - | 357 | WP_000090997.1 | phage tail tube protein | - |
| HRR20_RS17765 () | 3701443..3702939 | - | 1497 | WP_001519512.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| HRR20_RS17770 () | 3702923..3703093 | - | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| HRR20_RS17775 () | 3703102..3703662 | - | 561 | WP_000779279.1 | hypothetical protein | - |
| HRR20_RS17780 () | 3703659..3704165 | - | 507 | WP_000213502.1 | hypothetical protein | - |
| HRR20_RS17785 () | 3704140..3704550 | - | 411 | WP_001519511.1 | phage head closure protein | - |
| HRR20_RS17790 () | 3704547..3704870 | - | 324 | WP_000927707.1 | head-tail connector protein | - |
| HRR20_RS17795 () | 3704873..3705073 | - | 201 | WP_000601364.1 | hypothetical protein | - |
| HRR20_RS17800 () | 3705123..3706328 | - | 1206 | WP_172408832.1 | phage major capsid protein | - |
| HRR20_RS17805 () | 3706343..3706993 | - | 651 | WP_001193633.1 | HK97 family phage prohead protease | - |
| HRR20_RS17810 () | 3706971..3708212 | - | 1242 | WP_000466255.1 | phage portal protein | - |
| HRR20_RS17815 () | 3708212..3708394 | - | 183 | WP_000605606.1 | hypothetical protein | - |
| HRR20_RS17820 () | 3708406..3709902 | - | 1497 | WP_065312442.1 | terminase large subunit | - |
| HRR20_RS17825 () | 3710153..3710638 | - | 486 | WP_000929174.1 | phage terminase small subunit P27 family | - |
| HRR20_RS17830 () | 3710764..3711114 | - | 351 | WP_089586273.1 | HNH endonuclease | - |
| HRR20_RS17835 () | 3711265..3711600 | + | 336 | WP_001089762.1 | hypothetical protein | - |
| HRR20_RS17840 () | 3711701..3712270 | + | 570 | WP_089586272.1 | hypothetical protein | - |
| HRR20_RS17845 () | 3712434..3712826 | - | 393 | WP_001356320.1 | DUF2570 domain-containing protein | - |
| HRR20_RS17850 () | 3712810..3713286 | - | 477 | WP_113416945.1 | glycoside hydrolase family 104 protein | - |
| HRR20_RS17855 () | 3713273..3713578 | - | 306 | WP_000544528.1 | phage holin family protein | - |
| HRR20_RS17860 () | 3713900..3714589 | - | 690 | WP_029396340.1 | antitermination protein | - |
| HRR20_RS17865 () | 3714586..3714726 | - | 141 | WP_001568558.1 | YlcG family protein | - |
| HRR20_RS17870 () | 3714723..3715085 | - | 363 | WP_134894238.1 | crossover junction endodeoxyribonuclease RusA | - |
| HRR20_RS17875 () | 3715082..3715372 | - | 291 | WP_074468305.1 | DUF1364 domain-containing protein | - |
| HRR20_RS17880 () | 3715365..3715535 | - | 171 | WP_000211034.1 | hypothetical protein | - |
| HRR20_RS17885 () | 3715535..3715990 | - | 456 | WP_050010320.1 | DNA base-flipping protein YbcN | - |
| HRR20_RS17890 () | 3715987..3716088 | - | 102 | WP_001303586.1 | hypothetical protein | - |
| HRR20_RS17895 () | 3716178..3716687 | - | 510 | WP_000017329.1 | hypothetical protein | - |
| HRR20_RS17900 () | 3717225..3717788 | - | 564 | WP_162721248.1 | hypothetical protein | - |
| HRR20_RS17905 () | 3717992..3718198 | - | 207 | Protein_3508 | ead/Ea22-like family protein | - |
| HRR20_RS17910 () | 3718195..3718404 | - | 210 | WP_096891597.1 | hypothetical protein | - |
| HRR20_RS17915 () | 3718422..3718622 | - | 201 | WP_000062289.1 | hypothetical protein | - |
| HRR20_RS17920 () | 3718619..3718912 | - | 294 | WP_029488730.1 | protein ren | - |
| HRR20_RS17925 () | 3718909..3719610 | - | 702 | WP_172408833.1 | Replication protein P | - |
| HRR20_RS17930 () | 3719607..3720626 | - | 1020 | WP_172408834.1 | replication protein | - |
| HRR20_RS17935 () | 3720623..3721162 | - | 540 | WP_021571942.1 | toxin YdaT domain-containing protein | - |
| HRR20_RS17940 () | 3721244..3721474 | - | 231 | WP_001067459.1 | helix-turn-helix domain-containing protein | - |
| HRR20_RS17945 () | 3721579..3722268 | + | 690 | WP_000858975.1 | helix-turn-helix transcriptional regulator | - |
| HRR20_RS17950 () | 3722557..3723027 | + | 471 | WP_060710353.1 | DUF4065 domain-containing protein | - |
| HRR20_RS17955 () | 3723027..3723410 | + | 384 | WP_060710354.1 | hypothetical protein | - |
| HRR20_RS17960 () | 3723884..3724090 | + | 207 | WP_000233576.1 | phage encoded cell division inhibitor protein | - |
| HRR20_RS17965 () | 3724166..3724462 | + | 297 | WP_000995439.1 | host-nuclease inhibitor protein Gam | - |
| HRR20_RS17970 () | 3724468..3725253 | + | 786 | WP_001302855.1 | phage recombination protein Bet | - |
| HRR20_RS17975 () | 3725250..3725930 | + | 681 | WP_000186846.1 | YqaJ viral recombinase family protein | - |
| HRR20_RS17980 () | 3725927..3726085 | + | 159 | WP_000682559.1 | DUF1317 family protein | - |
| HRR20_RS17985 () | 3726082..3726639 | + | 558 | WP_000129285.1 | phage N-6-adenine-methyltransferase | - |
| HRR20_RS17990 () | 3726716..3726931 | + | 216 | WP_000188870.1 | hypothetical protein | - |
| HRR20_RS17995 () | 3727030..3727248 | + | 219 | WP_000763373.1 | TraR/DksA family transcriptional regulator | - |
| HRR20_RS18000 () | 3727296..3727574 | + | 279 | WP_000488407.1 | DUF4222 domain-containing protein | - |
| HRR20_RS18005 () | 3727773..3728936 | + | 1164 | WP_000051905.1 | site-specific integrase | - |
| HRR20_RS18015 () | 3729141..3730394 | - | 1254 | WP_000893279.1 | glutamate-5-semialdehyde dehydrogenase | - |
| HRR20_RS18020 () | 3730406..3731509 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| HRR20_RS18025 () | 3731797..3732852 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| HRR20_RS18030 () | 3732891..3733292 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| HRR20_RS18035 () | 3733350..3734594 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| - () | 3734010..3734090 | - | 81 | NuclAT_10 | - | - |
| - () | 3734010..3734090 | - | 81 | NuclAT_10 | - | - |
| - () | 3734010..3734090 | - | 81 | NuclAT_10 | - | - |
| - () | 3734010..3734090 | - | 81 | NuclAT_10 | - | - |
| HRR20_RS18040 () | 3734686..3735144 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| HRR20_RS18045 () | 3735405..3736862 | + | 1458 | WP_001293003.1 | cytosol nonspecific dipeptidase | - |
| HRR20_RS18050 () | 3736919..3737440 | - | 522 | Protein_3536 | peptide chain release factor H | - |
| HRR20_RS18055 () | 3737439..3737642 | - | 204 | Protein_3537 | RNA ligase RtcB family protein | - |
| HRR20_RS18060 () | 3737888..3738340 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| HRR20_RS18065 () | 3738350..3738748 | - | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| HRR20_RS18070 () | 3738751..3739044 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| HRR20_RS18075 () | 3739096..3740151 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| HRR20_RS18080 () | 3740222..3741007 | - | 786 | WP_000207587.1 | putative lateral flagellar export/assembly protein LafU | - |
| HRR20_RS18085 () | 3740979..3742691 | + | 1713 | Protein_3543 | flagellar biosynthesis protein FlhA | - |
| HRR20_RS18090 () | 3742915..3743412 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| HRR20_RS18095 () | 3743588..3744361 | - | 774 | WP_015675129.1 | C40 family peptidase | - |
| HRR20_RS18100 () | 3744547..3744807 | + | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| HRR20_RS18105 () | 3744810..3745088 | + | 279 | WP_000615976.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| HRR20_RS18110 () | 3745244..3745984 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| HRR20_RS18115 () | 3745955..3746722 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| HRR20_RS18120 () | 3746928..3747506 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
| HRR20_RS18125 () | 3747746..3750190 | + | 2445 | WP_000973083.1 | acyl-CoA dehydrogenase FadE | - |
| HRR20_RS18130 () | 3750233..3750679 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| HRR20_RS18135 () | 3750860..3751630 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| HRR20_RS18140 () | 3751671..3752807 | - | 1137 | WP_000420818.1 | ISAs1 family transposase | - |
| HRR20_RS18145 () | 3753073..3753770 | - | 698 | Protein_3555 | IS1-like element IS1A family transposase | - |
| HRR20_RS18150 () | 3753926..3754840 | + | 915 | WP_000908052.1 | hypothetical protein | - |
| HRR20_RS18155 () | 3754850..3755329 | + | 480 | WP_001236645.1 | hypothetical protein | - |
| HRR20_RS18160 () | 3755466..3756251 | - | 786 | WP_001086141.1 | lipoprotein | - |
| HRR20_RS18170 () | 3756788..3757519 | - | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| HRR20_RS18175 () | 3757584..3758051 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| HRR20_RS18180 () | 3758048..3758770 | - | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| HRR20_RS18185 () | 3758804..3759559 | + | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| HRR20_RS18190 () | 3759631..3760989 | + | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| HRR20_RS18195 () | 3761037..3761633 | - | 597 | Protein_3564 | methyltransferase domain-containing protein | - |
| HRR20_RS18200 () | 3761664..3762464 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| HRR20_RS18205 () | 3762705..3763619 | + | 915 | WP_000648572.1 | LysR family transcriptional regulator | - |
| HRR20_RS18210 () | 3763616..3764419 | - | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|