MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 39444 bp
Accession: NZ_AP021879 Location: 2811314..2850757 Organism: Desulfosarcina ovata subsp. ovata strain oXyS1 Replicon: chromosome
Accession: NZ_AP021879 Location: 2811314..2850757 Organism: Desulfosarcina ovata subsp. ovata strain oXyS1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GN112_RS12550 () | 2807913..2808185 | + | 273 | WP_155314093.1 | hypothetical protein | - |
| GN112_RS12555 () | 2808316..2808981 | - | 666 | WP_155310539.1 | corrinoid protein | - |
| GN112_RS12560 () | 2809148..2809390 | + | 243 | WP_155310540.1 | hypothetical protein | - |
| GN112_RS12565 () | 2809524..2810132 | + | 609 | WP_155310541.1 | hypothetical protein | - |
| GN112_RS12570 () | 2810565..2811317 | - | 753 | WP_155310542.1 | IS21-like element helper ATPase IstB | - |
| GN112_RS12575 () | 2811314..2812780 | - | 1467 | WP_155310543.1 | IS21 family transposase ISCsa9 | Transposase |
| GN112_RS12580 () | 2812777..2813154 | - | 378 | WP_155308628.1 | helix-turn-helix domain-containing protein | - |
| GN112_RS12585 () | 2815988..2817382 | - | 1395 | WP_155308548.1 | IS66 family transposase ISMxa3 | Transposase |
| GN112_RS12590 () | 2819669..2820265 | - | 597 | WP_155310544.1 | CRISPR-associated protein Cas4 | - |
| GN112_RS12595 () | 2820299..2822698 | - | 2400 | WP_155310545.1 | CRISPR-associated helicase Cas3' | - |
| GN112_RS12600 () | 2822685..2823230 | - | 546 | WP_155310546.1 | type I-B CRISPR-associated protein Cas5 | - |
| GN112_RS12605 () | 2823272..2824708 | - | 1437 | WP_197743311.1 | IS4 family transposase ISRso13 | Transposase |
| GN112_RS12610 () | 2824768..2824920 | - | 153 | Protein_2500 | CRISPR-associated protein Cas5 | - |
| GN112_RS12615 () | 2825025..2825297 | - | 273 | WP_155314093.1 | hypothetical protein | - |
| GN112_RS12620 () | 2826350..2827351 | - | 1002 | WP_155310547.1 | type I-B CRISPR-associated protein Cas7/Csh2 | - |
| GN112_RS12625 () | 2827355..2829205 | - | 1851 | WP_155310548.1 | TIGR02556 family CRISPR-associated protein | - |
| GN112_RS12630 () | 2829202..2829867 | - | 666 | WP_155310549.1 | DNA repair protein | - |
| GN112_RS12635 () | 2830278..2831543 | - | 1266 | WP_155309288.1 | IS4 family transposase ISGur4 | Transposase |
| GN112_RS12640 () | 2831739..2832122 | + | 384 | WP_197743321.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| GN112_RS12645 () | 2832119..2832457 | + | 339 | WP_173179393.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| GN112_RS12650 () | 2832454..2832753 | - | 300 | WP_155310550.1 | CRISPR-associated endonuclease Cas2 | - |
| GN112_RS12655 () | 2832756..2833772 | - | 1017 | WP_155310551.1 | CRISPR-associated endonuclease Cas1 | - |
| GN112_RS12660 () | 2833873..2837466 | - | 3594 | WP_155314226.1 | SIS domain-containing protein | - |
| GN112_RS12665 () | 2837650..2838729 | - | 1080 | WP_155310552.1 | iron-containing alcohol dehydrogenase | - |
| GN112_RS12670 () | 2838778..2839968 | - | 1191 | WP_155310553.1 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| GN112_RS12675 () | 2840005..2841390 | - | 1386 | WP_155310554.1 | PbpA | - |
| GN112_RS12680 () | 2841415..2843337 | - | 1923 | WP_155310555.1 | methionine--tRNA ligase | - |
| GN112_RS12685 () | 2843341..2844183 | - | 843 | WP_155310556.1 | stage 0 sporulation family protein | - |
| GN112_RS12690 () | 2844188..2845243 | - | 1056 | WP_155310557.1 | DNA polymerase III subunit delta' | - |
| GN112_RS12695 () | 2845344..2845619 | - | 276 | WP_155310558.1 | integration host factor subunit beta | - |
| GN112_RS12700 () | 2845701..2846228 | - | 528 | WP_155310559.1 | UpxY family transcription antiterminator | - |
| GN112_RS12705 () | 2846444..2848723 | - | 2280 | WP_162458906.1 | LPS-assembly protein LptD | - |
| GN112_RS12710 () | 2848983..2849765 | + | 783 | WP_155310561.1 | 5'/3'-nucleotidase SurE | - |
| GN112_RS12715 () | 2849792..2850757 | + | 966 | WP_162458907.1 | HD domain-containing protein | - |
| GN112_RS12720 () | 2850777..2851412 | + | 636 | WP_155314227.1 | dTMP kinase | - |
| GN112_RS12725 () | 2851422..2853707 | + | 2286 | WP_155310563.1 | cysteine--tRNA ligase | - |
| GN112_RS12730 () | 2853758..2854753 | + | 996 | WP_155310564.1 | hypothetical protein | - |
| GN112_RS12735 () | 2854938..2855126 | + | 189 | WP_155310565.1 | 4Fe-4S binding protein | - |
| GN112_RS12740 () | 2855207..2855716 | + | 510 | WP_155310566.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|