MGE detailed information
MGE type: Genomic_island MGE length: 88562 bp
Accession: NZ_AP021875 Location: 515994..604555 Organism: Desulfosarcina widdelii strain PP31 Replicon: chromosome
Accession: NZ_AP021875 Location: 515994..604555 Organism: Desulfosarcina widdelii strain PP31 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GN111_RS02405 () | 512298..513248 | + | 951 | WP_155302218.1 | hypothetical protein | - |
| GN111_RS02410 () | 513951..515321 | + | 1371 | WP_176603279.1 | group II intron reverse transcriptase/maturase | - |
| GN111_RS02415 () | 515501..515788 | + | 288 | WP_155302219.1 | hypothetical protein | - |
| GN111_RS02420 () | 515994..516692 | + | 699 | WP_155302220.1 | IS91 family transposase ISMno24 | Transposase |
| GN111_RS02425 () | 516814..517011 | + | 198 | WP_155302221.1 | hypothetical protein | - |
| GN111_RS02430 () | 517172..517504 | + | 333 | WP_155302222.1 | DUF2958 domain-containing protein | - |
| GN111_RS02435 () | 517548..517937 | + | 390 | WP_155302223.1 | hypothetical protein | - |
| GN111_RS02440 () | 517934..518125 | + | 192 | WP_155302224.1 | DUF4314 domain-containing protein | - |
| GN111_RS02445 () | 518476..519363 | + | 888 | Protein_482 | IS1595 family transposase ISBeb4 | Transposase |
| GN111_RS02450 () | 519491..520270 | + | 780 | WP_155302226.1 | antirestriction protein | - |
| GN111_RS02455 () | 520286..520789 | + | 504 | WP_155302227.1 | hypothetical protein | - |
| GN111_RS02460 () | 520993..522221 | - | 1229 | Protein_485 | IS3 family transposase | - |
| GN111_RS02465 () | 522631..522825 | + | 195 | WP_155302228.1 | hypothetical protein | - |
| GN111_RS02470 () | 522822..523145 | + | 324 | WP_155302229.1 | DUF3786 domain-containing protein | - |
| GN111_RS02475 () | 523155..523349 | + | 195 | WP_170302089.1 | DUF3786 domain-containing protein | - |
| GN111_RS02480 () | 523328..523588 | - | 261 | Protein_489 | methylenetetrahydrofolate reductase C-terminal domain-containing protein | - |
| GN111_RS02485 () | 524561..526231 | + | 1671 | WP_155302230.1 | acyl--CoA ligase | - |
| GN111_RS02490 () | 526284..527396 | + | 1113 | WP_155302231.1 | C4-dicarboxylate ABC transporter substrate-binding protein | - |
| GN111_RS02495 () | 527701..529050 | + | 1350 | WP_155302232.1 | TRAP transporter large permease | - |
| GN111_RS02500 () | 529056..529550 | + | 495 | WP_155302233.1 | TRAP transporter small permease subunit | - |
| GN111_RS02505 () | 529576..530361 | + | 786 | WP_155302234.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GN111_RS02510 () | 530424..531812 | + | 1389 | WP_155302235.1 | 4-hydroxybutyryl-CoA dehydratase | - |
| GN111_RS02515 () | 532351..533127 | + | 777 | WP_155302236.1 | enoyl-CoA hydratase/isomerase family protein | - |
| GN111_RS02520 () | 533249..534430 | + | 1182 | WP_155307890.1 | thiolase family protein | - |
| GN111_RS02525 () | 534498..535349 | + | 852 | WP_197740484.1 | Fatty acid oxidation complex subunit alpha | VF |
| GN111_RS02530 () | 535527..535835 | - | 309 | WP_170302090.1 | IS1595 family transposase ISPepr2 | Transposase |
| GN111_RS02535 () | 536492..536959 | + | 468 | WP_155302238.1 | MaoC family dehydratase N-terminal domain-containing protein | - |
| GN111_RS02540 () | 537497..537856 | + | 360 | WP_155302239.1 | 3-hydroxyacyl-ACP dehydratase | - |
| GN111_RS02545 () | 537960..538943 | + | 984 | WP_155302240.1 | L-threonine 3-dehydrogenase | VF |
| GN111_RS02550 () | 539731..541845 | - | 2115 | WP_155302241.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| GN111_RS02555 () | 542929..544836 | + | 1908 | WP_155302242.1 | cyclase family protein | - |
| GN111_RS02560 () | 545878..547038 | + | 1161 | Protein_505 | acyl-CoA dehydrogenase family protein | - |
| GN111_RS02565 () | 547400..550687 | + | 3288 | WP_155302243.1 | methylmalonyl-CoA mutase family protein | - |
| GN111_RS02570 () | 551329..551967 | + | 639 | WP_155302244.1 | Nucleoid occlusion factor SlmA | VF |
| GN111_RS02575 () | 552326..552559 | + | 234 | WP_155302245.1 | hypothetical protein | - |
| GN111_RS02580 () | 552625..553224 | + | 600 | WP_170302091.1 | Sensor histidine kinase RcsC | VF |
| GN111_RS02585 () | 553484..553855 | + | 372 | WP_155302247.1 | hypothetical protein | - |
| GN111_RS02590 () | 554133..554417 | + | 285 | WP_155302248.1 | integration host factor subunit alpha | - |
| GN111_RS02595 () | 554414..554740 | + | 327 | WP_155302249.1 | PilZ domain-containing protein | - |
| GN111_RS02600 () | 554960..555235 | + | 276 | WP_155302250.1 | integration host factor subunit beta | - |
| GN111_RS02605 () | 555361..557325 | + | 1965 | WP_155302251.1 | response regulator | - |
| GN111_RS02610 () | 557750..559099 | + | 1350 | WP_197740485.1 | hypothetical protein | - |
| GN111_RS02615 () | 559717..560034 | - | 318 | WP_155302252.1 | hypothetical protein | - |
| GN111_RS02620 () | 560087..560710 | - | 624 | WP_155302253.1 | hypothetical protein | - |
| GN111_RS02625 () | 560736..561455 | - | 720 | WP_155302254.1 | hypothetical protein | - |
| GN111_RS02630 () | 561629..561946 | + | 318 | WP_170302092.1 | hypothetical protein | VF |
| GN111_RS02635 () | 563456..564100 | + | 645 | WP_155302256.1 | hypothetical protein | - |
| GN111_RS02640 () | 564087..565916 | + | 1830 | WP_155302257.1 | hypothetical protein | - |
| GN111_RS02645 () | 565979..567511 | + | 1533 | WP_155302258.1 | hypothetical protein | - |
| GN111_RS02650 () | 568887..569072 | - | 186 | WP_155302259.1 | hypothetical protein | - |
| GN111_RS02655 () | 569047..569301 | - | 255 | WP_155302260.1 | hypothetical protein | - |
| GN111_RS02660 () | 569305..569502 | - | 198 | WP_155302261.1 | hypothetical protein | - |
| GN111_RS02665 () | 570040..570282 | + | 243 | WP_155302262.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| GN111_RS02670 () | 570279..570542 | + | 264 | WP_155302263.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| GN111_RS02675 () | 570576..571517 | - | 942 | WP_170302093.1 | Tyrosine recombinase XerC | VF |
| GN111_RS02680 () | 572049..572264 | + | 216 | WP_155302265.1 | hypothetical protein | - |
| GN111_RS02685 () | 572277..572486 | + | 210 | WP_155302266.1 | hypothetical protein | - |
| GN111_RS02690 () | 572487..572768 | + | 282 | WP_155302267.1 | hypothetical protein | - |
| GN111_RS02695 () | 572855..573187 | - | 333 | WP_155302268.1 | M50 family metallopeptidase | - |
| GN111_RS02700 () | 573199..573441 | - | 243 | WP_155302269.1 | hypothetical protein | - |
| GN111_RS02705 () | 573489..573737 | - | 249 | WP_155302270.1 | hypothetical protein | - |
| GN111_RS02710 () | 573781..574116 | - | 336 | WP_155302271.1 | DUF86 domain-containing protein | - |
| GN111_RS02715 () | 574106..574402 | - | 297 | WP_155302272.1 | nucleotidyltransferase family protein | - |
| GN111_RS02720 () | 574601..574924 | - | 324 | WP_155302273.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GN111_RS02725 () | 574924..575205 | - | 282 | WP_155307893.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| GN111_RS02730 () | 576652..577362 | + | 711 | WP_155302274.1 | 4Fe-4S binding protein | - |
| GN111_RS02735 () | 577375..578001 | + | 627 | WP_155302275.1 | hypothetical protein | - |
| GN111_RS02740 () | 578090..579001 | + | 912 | WP_155302276.1 | NAD(P)-dependent oxidoreductase | - |
| GN111_RS02745 () | 579019..579168 | + | 150 | WP_155302277.1 | hypothetical protein | - |
| GN111_RS02750 () | 579405..582932 | + | 3528 | WP_155302278.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| GN111_RS02755 () | 582977..584425 | + | 1449 | WP_155302279.1 | 4-hydroxyphenylacetate 3-hydroxylase family protein | - |
| GN111_RS02760 () | 584484..586844 | + | 2361 | WP_170302094.1 | formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme | - |
| GN111_RS02765 () | 587057..588070 | + | 1014 | WP_155302281.1 | TRAP transporter substrate-binding protein | - |
| GN111_RS02770 () | 588200..589342 | + | 1143 | WP_155302282.1 | iron-containing alcohol dehydrogenase | - |
| GN111_RS02775 () | 589411..589899 | + | 489 | WP_155302283.1 | TRAP transporter small permease | - |
| GN111_RS02780 () | 589928..591202 | + | 1275 | WP_155302284.1 | TRAP transporter large permease | - |
| GN111_RS02785 () | 591251..592198 | + | 948 | WP_155302285.1 | glycyl-radical enzyme activating protein | - |
| GN111_RS02790 () | 592195..593433 | + | 1239 | WP_155302286.1 | MFS transporter | - |
| GN111_RS02795 () | 593587..594777 | + | 1191 | WP_155302287.1 | fumarylacetoacetate hydrolase family protein | - |
| GN111_RS02800 () | 594813..596387 | + | 1575 | WP_155302288.1 | aldehyde dehydrogenase (NADP(+)) | - |
| GN111_RS02805 () | 596470..597603 | + | 1134 | WP_155302289.1 | iron-containing alcohol dehydrogenase | - |
| GN111_RS02810 () | 597730..598818 | + | 1089 | WP_155302290.1 | 3-isopropylmalate dehydrogenase | - |
| GN111_RS02815 () | 599048..600223 | + | 1176 | WP_155302291.1 | amidohydrolase family protein | - |
| GN111_RS02820 () | 600315..601190 | + | 876 | WP_155302292.1 | NAD(P)-dependent oxidoreductase | - |
| GN111_RS02825 () | 601395..601691 | + | 297 | WP_155302293.1 | antibiotic biosynthesis monooxygenase | - |
| GN111_RS02830 () | 601883..602581 | + | 699 | WP_155302294.1 | GntR family transcriptional regulator | - |
| GN111_RS02835 () | 602806..603558 | - | 753 | WP_155302295.1 | SDR family oxidoreductase | - |
| GN111_RS02840 () | 603661..604092 | - | 432 | WP_170302095.1 | DUF3795 domain-containing protein | - |
| GN111_RS02845 () | 604115..604582 | - | 468 | WP_170302096.1 | Transcriptional regulator SlyA | VF |
| GN111_RS02850 () | 604901..605671 | + | 771 | WP_170302097.1 | site-specific integrase | - |
| GN111_RS02855 () | 606055..606249 | + | 195 | WP_155302299.1 | hypothetical protein | - |
| GN111_RS02860 () | 606246..606794 | + | 549 | WP_155302300.1 | DUF3786 domain-containing protein | - |
| GN111_RS02865 () | 606735..608339 | - | 1605 | WP_155302301.1 | methylenetetrahydrofolate reductase C-terminal domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|