MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 82594 bp
Accession: NZ_AP019545 Location: 1898436..1981029 Organism: Staphylococcus aureus strain KG-22 Replicon: chromosome
Accession: NZ_AP019545 Location: 1898436..1981029 Organism: Staphylococcus aureus strain KG-22 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GDK20_RS09275 () | 1895556..1895867 | - | 312 | WP_000836461.1 | rhodanese-like domain-containing protein | - |
| GDK20_RS09280 () | 1895889..1898306 | - | 2418 | WP_001557386.1 | leucine--tRNA ligase | - |
| GDK20_RS09285 () | 1898594..1899775 | - | 1182 | WP_001025067.1 | MFS transporter | - |
| GDK20_RS09290 () | 1899885..1900838 | + | 954 | WP_000526539.1 | TIGR01212 family radical SAM protein | - |
| GDK20_RS09295 () | 1900835..1901398 | + | 564 | WP_000764419.1 | class I SAM-dependent methyltransferase | - |
| GDK20_RS09300 () | 1901521..1901922 | - | 402 | WP_000757543.1 | MarR family transcriptional regulator | - |
| GDK20_RS09305 () | 1902494..1903321 | - | 828 | WP_000266096.1 | alpha/beta hydrolase | - |
| GDK20_RS09310 () | 1903324..1903443 | - | 120 | WP_001790712.1 | hypothetical protein | - |
| GDK20_RS09315 () | 1903555..1904556 | + | 1002 | WP_001196362.1 | proline dehydrogenase | - |
| GDK20_RS09320 () | 1904678..1905142 | - | 465 | WP_001008549.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| GDK20_RS09325 () | 1905155..1906336 | - | 1182 | WP_001159037.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| GDK20_RS09330 () | 1906347..1906979 | - | 633 | WP_000493887.1 | riboflavin synthase | - |
| GDK20_RS09335 () | 1906986..1908029 | - | 1044 | WP_000077358.1 | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD | - |
| GDK20_RS09340 () | 1908510..1910012 | - | 1503 | WP_001261668.1 | FAD/NAD(P)-binding domain-containing protein | - |
| GDK20_RS09345 () | 1910535..1910849 | + | 315 | WP_000221177.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| GDK20_RS09350 () | 1910849..1912141 | + | 1293 | WP_000989121.1 | arsenite efflux transporter membrane subunit ArsB | - |
| GDK20_RS09355 () | 1912228..1913082 | - | 855 | WP_001032833.1 | N-acetylglucosaminidase | - |
| GDK20_RS09360 () | 1913358..1913582 | - | 225 | WP_000384171.1 | hypothetical protein | - |
| GDK20_RS09365 () | 1913781..1914251 | + | 471 | WP_000671057.1 | RNA polymerase sigma factor SigS | - |
| GDK20_RS09370 () | 1914364..1914807 | + | 444 | WP_001153742.1 | competence protein ComK | - |
| GDK20_RS09375 () | 1914794..1915237 | - | 444 | WP_001030469.1 | hypothetical protein | - |
| GDK20_RS09380 () | 1915533..1916168 | + | 636 | WP_001168903.1 | CPBP family intramembrane metalloprotease SdpA | - |
| GDK20_RS09385 () | 1916608..1917321 | - | 714 | WP_001096495.1 | transaldolase | - |
| GDK20_RS09390 () | 1917581..1917883 | + | 303 | WP_000091442.1 | hypothetical protein | - |
| GDK20_RS09395 () | 1918139..1918504 | + | 366 | WP_001200542.1 | fluoride efflux transporter CrcB | - |
| GDK20_RS09400 () | 1918501..1918854 | + | 354 | WP_000623470.1 | CrcB family protein | - |
| GDK20_RS09405 () | 1919253..1920788 | + | 1536 | Protein_1811 | IS1182 family transposase | - |
| GDK20_RS09410 () | 1920851..1921684 | - | 834 | WP_000453306.1 | aldo/keto reductase | - |
| GDK20_RS09415 () | 1921896..1922804 | - | 909 | WP_000366163.1 | NERD domain-containing protein | - |
| GDK20_RS09420 () | 1922926..1924122 | - | 1197 | WP_152064750.1 | methionine adenosyltransferase | - |
| GDK20_RS09425 () | 1924494..1926086 | + | 1593 | WP_000109906.1 | phosphoenolpyruvate carboxykinase (ATP) | - |
| GDK20_RS09430 () | 1926464..1927210 | - | 747 | WP_001822900.1 | S9 family peptidase | - |
| GDK20_RS09435 () | 1927215..1927688 | - | 474 | WP_000672013.1 | nucleoside triphosphatase YtkD | - |
| GDK20_RS09440 () | 1927754..1928011 | + | 258 | WP_000718107.1 | membrane protein insertion efficiency factor YidD | - |
| GDK20_RS09445 () | 1928008..1929009 | - | 1002 | WP_000778528.1 | o-succinylbenzoate synthase | - |
| GDK20_RS09450 () | 1929014..1930492 | - | 1479 | WP_000348364.1 | o-succinylbenzoate--CoA ligase | - |
| GDK20_RS09455 () | 1930651..1931106 | - | 456 | WP_012840523.1 | DUF4909 domain-containing protein | - |
| GDK20_RS09460 () | 1931409..1932059 | + | 651 | WP_001795210.1 | excalibur calcium-binding domain-containing protein | - |
| GDK20_RS09465 () | 1932140..1933135 | + | 996 | WP_000070642.1 | DUF4352 domain-containing protein | - |
| GDK20_RS09470 () | 1933210..1933836 | + | 627 | WP_000669024.1 | hypothetical protein | - |
| GDK20_RS09475 () | 1933877..1934218 | + | 342 | WP_000627540.1 | DUF3969 family protein | - |
| GDK20_RS09480 () | 1934319..1934891 | + | 573 | WP_000414216.1 | hypothetical protein | - |
| GDK20_RS09485 () | 1935089..1936101 | - | 1013 | Protein_1827 | IS3 family transposase ISClsp1 | Transposase |
| GDK20_RS09490 () | 1936246..1936341 | + | 96 | WP_001801861.1 | type I toxin-antitoxin system Fst family toxin PepA1 | Toxin Detail |
| - () | 1936369..1936426 | - | 58 | - | - | Antitoxin Detail |
| GDK20_RS09495 () | 1936464..1936565 | + | 102 | WP_001792025.1 | hypothetical protein | - |
| GDK20_RS09500 () | 1936543..1936704 | - | 162 | Protein_1830 | transposase | - |
| GDK20_RS09505 () | 1936695..1937189 | - | 495 | Protein_1831 | IS21 family transposase IS232 | Transposase |
| GDK20_RS09510 () | 1937641..1938870 | - | 1230 | WP_000072627.1 | restriction endonuclease subunit S | - |
| GDK20_RS09515 () | 1938863..1940419 | - | 1557 | WP_000028669.1 | type I restriction-modification system subunit M | - |
| GDK20_RS09520 () | 1940583..1940717 | - | 135 | WP_001791797.1 | hypothetical protein | - |
| GDK20_RS09525 () | 1940780..1941499 | - | 720 | WP_001038752.1 | Serine protease SplF | VF |
| GDK20_RS09530 () | 1941601..1941708 | + | 108 | WP_011447030.1 | hypothetical protein | - |
| GDK20_RS09535 () | 1941657..1942376 | - | 720 | WP_001038704.1 | Serine protease SplD | VF |
| GDK20_RS09540 () | 1942497..1943216 | - | 720 | WP_001038872.1 | Serine protease SplC | VF |
| GDK20_RS09545 () | 1943274..1943996 | - | 723 | WP_001039454.1 | Serine protease SplB | VF |
| GDK20_RS09550 () | 1944121..1944828 | - | 708 | WP_001039427.1 | Serine protease SplA | VF |
| GDK20_RS09560 () | 1945791..1946372 | + | 582 | WP_001092780.1 | DUF4888 domain-containing protein | - |
| GDK20_RS09565 () | 1946845..1947133 | - | 289 | Protein_1842 | BsaG protein | - |
| GDK20_RS09570 () | 1947319..1947792 | + | 474 | WP_000550252.1 | hypothetical protein | - |
| GDK20_RS09575 () | 1947797..1948588 | + | 792 | WP_000543854.1 | DUF1828 domain-containing protein | - |
| GDK20_RS09580 () | 1948958..1949941 | - | 984 | WP_000782463.1 | Leucotoxin LukDv | VF |
| GDK20_RS09585 () | 1949943..1950878 | - | 936 | WP_152064751.1 | Leucotoxin LukEv | VF |
| GDK20_RS15345 () | 1951774..1952205 | + | 432 | Protein_1847 | hypothetical protein | - |
| GDK20_RS09595 () | 1952541..1952855 | + | 315 | WP_000420682.1 | YdcP family protein | - |
| GDK20_RS09600 () | 1952871..1953257 | + | 387 | WP_000985015.1 | YdcP family protein | - |
| GDK20_RS09605 () | 1953286..1953894 | + | 609 | Protein_1850 | ATP-binding protein | - |
| GDK20_RS09610 () | 1953923..1955071 | + | 1149 | WP_000323282.1 | replication initiation factor domain-containing protein | - |
| GDK20_RS09615 () | 1955114..1955335 | + | 222 | WP_001009056.1 | hypothetical protein | - |
| GDK20_RS09620 () | 1955452..1955949 | + | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| GDK20_RS09625 () | 1955924..1956430 | + | 507 | WP_000506270.1 | conjugal transfer protein | - |
| GDK20_RS09630 () | 1956414..1958861 | + | 2448 | WP_000331160.1 | ATP-binding protein | - |
| GDK20_RS09635 () | 1958864..1961041 | + | 2178 | WP_000804748.1 | membrane protein | - |
| GDK20_RS09640 () | 1961038..1962039 | + | 1002 | WP_000769868.1 | putative endopeptidase p60 | VF |
| GDK20_RS09645 () | 1962036..1962968 | + | 933 | WP_001224318.1 | conjugal transfer protein | - |
| GDK20_RS09650 () | 1963213..1963329 | + | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| GDK20_RS09655 () | 1963345..1965264 | + | 1920 | WP_000691736.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| GDK20_RS09660 () | 1965383..1965550 | + | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| GDK20_RS09665 () | 1965610..1965963 | - | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| GDK20_RS09675 () | 1966468..1966890 | + | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| GDK20_RS09680 () | 1966887..1967117 | + | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| GDK20_RS09690 () | 1967578..1967781 | + | 204 | WP_000814511.1 | excisionase | - |
| GDK20_RS09695 () | 1967863..1969080 | + | 1218 | WP_001291561.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| GDK20_RS09700 () | 1969297..1970085 | + | 789 | WP_000206343.1 | DUF1828 domain-containing protein | - |
| GDK20_RS09705 () | 1970919..1971413 | + | 495 | WP_001253432.1 | hypothetical protein | - |
| GDK20_RS09710 () | 1971491..1971727 | + | 237 | WP_000617704.1 | hypothetical protein | - |
| GDK20_RS09715 () | 1971748..1972524 | + | 777 | WP_000848318.1 | DUF1828 domain-containing protein | - |
| GDK20_RS09725 () | 1973076..1973852 | - | 777 | WP_000736712.1 | Enterotoxin type G | VF |
| GDK20_RS09730 () | 1974045..1975217 | - | 1173 | WP_000195429.1 | IS256 family transposase IS256 | Transposase |
| GDK20_RS09740 () | 1975467..1976222 | - | 756 | WP_001236362.1 | Enterotoxin type A | VF |
| GDK20_RS09745 () | 1976261..1977032 | - | 772 | Protein_1874 | Enterotoxin type C-2 | VF |
| GDK20_RS09750 () | 1977186..1977914 | - | 729 | WP_000713847.1 | Enterotoxin type A | VF |
| GDK20_RS09755 () | 1977949..1978668 | - | 720 | WP_000821658.1 | Enterotoxin type D | VF |
| GDK20_RS09765 () | 1978912..1980084 | + | 1173 | WP_000195429.1 | IS256 family transposase IS256 | Transposase |
| GDK20_RS09770 () | 1980281..1981063 | - | 783 | WP_010922839.1 | staphylococcal enterotoxin type O | - |
| GDK20_RS09775 () | 1981294..1982613 | - | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| GDK20_RS09820 () | 1983943..1984497 | - | 555 | WP_000132890.1 | alpha/beta hydrolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|