MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 82594 bp
Accession: NZ_AP019542 Location: 1890608..1973201 Organism: Staphylococcus aureus strain KG-03 Replicon: chromosome
Accession: NZ_AP019542 Location: 1890608..1973201 Organism: Staphylococcus aureus strain KG-03 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GDK21_RS09235 () | 1887728..1888039 | - | 312 | WP_000836461.1 | rhodanese-like domain-containing protein | - |
| GDK21_RS09240 () | 1888061..1890478 | - | 2418 | WP_001557386.1 | leucine--tRNA ligase | - |
| GDK21_RS09245 () | 1890766..1891947 | - | 1182 | WP_001025067.1 | MFS transporter | - |
| GDK21_RS09250 () | 1892057..1893010 | + | 954 | WP_000526539.1 | TIGR01212 family radical SAM protein | - |
| GDK21_RS09255 () | 1893007..1893570 | + | 564 | WP_000764419.1 | class I SAM-dependent methyltransferase | - |
| GDK21_RS09260 () | 1893693..1894094 | - | 402 | WP_000757543.1 | MarR family transcriptional regulator | - |
| GDK21_RS09265 () | 1894666..1895493 | - | 828 | WP_000266096.1 | alpha/beta hydrolase | - |
| GDK21_RS09270 () | 1895496..1895615 | - | 120 | WP_001790712.1 | hypothetical protein | - |
| GDK21_RS09275 () | 1895727..1896728 | + | 1002 | WP_001196362.1 | proline dehydrogenase | - |
| GDK21_RS09280 () | 1896850..1897314 | - | 465 | WP_001008549.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| GDK21_RS09285 () | 1897327..1898508 | - | 1182 | WP_001159037.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| GDK21_RS09290 () | 1898519..1899151 | - | 633 | WP_000493887.1 | riboflavin synthase | - |
| GDK21_RS09295 () | 1899158..1900201 | - | 1044 | WP_000077358.1 | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD | - |
| GDK21_RS09300 () | 1900682..1902184 | - | 1503 | WP_001261668.1 | FAD/NAD(P)-binding domain-containing protein | - |
| GDK21_RS09305 () | 1902707..1903021 | + | 315 | WP_000221177.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| GDK21_RS09310 () | 1903021..1904313 | + | 1293 | WP_000989121.1 | arsenite efflux transporter membrane subunit ArsB | - |
| GDK21_RS09315 () | 1904400..1905254 | - | 855 | WP_001032833.1 | N-acetylglucosaminidase | - |
| GDK21_RS09320 () | 1905530..1905754 | - | 225 | WP_000384171.1 | hypothetical protein | - |
| GDK21_RS09325 () | 1905953..1906423 | + | 471 | WP_000671057.1 | RNA polymerase sigma factor SigS | - |
| GDK21_RS09330 () | 1906536..1906979 | + | 444 | WP_001153742.1 | competence protein ComK | - |
| GDK21_RS09335 () | 1906966..1907409 | - | 444 | WP_001030469.1 | hypothetical protein | - |
| GDK21_RS09340 () | 1907705..1908340 | + | 636 | WP_001168903.1 | CPBP family intramembrane metalloprotease SdpA | - |
| GDK21_RS09345 () | 1908780..1909493 | - | 714 | WP_001096495.1 | transaldolase | - |
| GDK21_RS09350 () | 1909753..1910055 | + | 303 | WP_000091442.1 | hypothetical protein | - |
| GDK21_RS09355 () | 1910311..1910676 | + | 366 | WP_001200542.1 | fluoride efflux transporter CrcB | - |
| GDK21_RS09360 () | 1910673..1911026 | + | 354 | WP_000623470.1 | CrcB family protein | - |
| GDK21_RS09365 () | 1911425..1912960 | + | 1536 | Protein_1804 | IS1182 family transposase | - |
| GDK21_RS09370 () | 1913023..1913856 | - | 834 | WP_000453306.1 | aldo/keto reductase | - |
| GDK21_RS09375 () | 1914068..1914976 | - | 909 | WP_000366163.1 | NERD domain-containing protein | - |
| GDK21_RS09380 () | 1915098..1916294 | - | 1197 | WP_152064750.1 | methionine adenosyltransferase | - |
| GDK21_RS09385 () | 1916666..1918258 | + | 1593 | WP_000109906.1 | phosphoenolpyruvate carboxykinase (ATP) | - |
| GDK21_RS09390 () | 1918636..1919382 | - | 747 | WP_001822900.1 | S9 family peptidase | - |
| GDK21_RS09395 () | 1919387..1919860 | - | 474 | WP_000672013.1 | nucleoside triphosphatase YtkD | - |
| GDK21_RS09400 () | 1919926..1920183 | + | 258 | WP_000718107.1 | membrane protein insertion efficiency factor YidD | - |
| GDK21_RS09405 () | 1920180..1921181 | - | 1002 | WP_000778528.1 | o-succinylbenzoate synthase | - |
| GDK21_RS09410 () | 1921186..1922664 | - | 1479 | WP_000348364.1 | o-succinylbenzoate--CoA ligase | - |
| GDK21_RS09415 () | 1922823..1923278 | - | 456 | WP_012840523.1 | DUF4909 domain-containing protein | - |
| GDK21_RS09420 () | 1923581..1924231 | + | 651 | WP_001795210.1 | excalibur calcium-binding domain-containing protein | - |
| GDK21_RS09425 () | 1924312..1925307 | + | 996 | WP_000070642.1 | DUF4352 domain-containing protein | - |
| GDK21_RS09430 () | 1925382..1926008 | + | 627 | WP_000669024.1 | hypothetical protein | - |
| GDK21_RS09435 () | 1926049..1926390 | + | 342 | WP_000627540.1 | DUF3969 family protein | - |
| GDK21_RS09440 () | 1926491..1927063 | + | 573 | WP_000414216.1 | hypothetical protein | - |
| GDK21_RS09445 () | 1927261..1928273 | - | 1013 | Protein_1820 | IS3 family transposase ISClsp1 | Transposase |
| GDK21_RS09450 () | 1928418..1928513 | + | 96 | WP_001801861.1 | type I toxin-antitoxin system Fst family toxin PepA1 | Toxin Detail |
| - () | 1928541..1928598 | - | 58 | - | - | Antitoxin Detail |
| GDK21_RS09455 () | 1928636..1928737 | + | 102 | WP_001792025.1 | hypothetical protein | - |
| GDK21_RS09460 () | 1928715..1928876 | - | 162 | Protein_1823 | transposase | - |
| GDK21_RS09465 () | 1928867..1929361 | - | 495 | Protein_1824 | IS21 family transposase IS232 | Transposase |
| GDK21_RS09470 () | 1929813..1931042 | - | 1230 | WP_000072627.1 | restriction endonuclease subunit S | - |
| GDK21_RS09475 () | 1931035..1932591 | - | 1557 | WP_000028669.1 | type I restriction-modification system subunit M | - |
| GDK21_RS09480 () | 1932755..1932889 | - | 135 | WP_001791797.1 | hypothetical protein | - |
| GDK21_RS09485 () | 1932952..1933671 | - | 720 | WP_001038752.1 | hypothetical protein | VF |
| GDK21_RS09490 () | 1933773..1933880 | + | 108 | WP_011447030.1 | hypothetical protein | - |
| GDK21_RS09495 () | 1933829..1934548 | - | 720 | WP_001038704.1 | hypothetical protein | VF |
| GDK21_RS09500 () | 1934669..1935388 | - | 720 | WP_001038872.1 | hypothetical protein | VF |
| GDK21_RS09505 () | 1935446..1936168 | - | 723 | WP_001039454.1 | hypothetical protein | VF |
| GDK21_RS09510 () | 1936293..1937000 | - | 708 | WP_001039427.1 | hypothetical protein | VF |
| GDK21_RS09520 () | 1937963..1938544 | + | 582 | WP_001092780.1 | DUF4888 domain-containing protein | - |
| GDK21_RS09525 () | 1939017..1939305 | - | 289 | Protein_1835 | BsaG protein | - |
| GDK21_RS09530 () | 1939491..1939964 | + | 474 | WP_000550252.1 | hypothetical protein | - |
| GDK21_RS09535 () | 1939969..1940760 | + | 792 | WP_000543854.1 | DUF1828 domain-containing protein | - |
| GDK21_RS09540 () | 1941130..1942113 | - | 984 | WP_000782463.1 | hypothetical protein | VF |
| GDK21_RS09545 () | 1942115..1943050 | - | 936 | WP_152064751.1 | hypothetical protein | VF |
| GDK21_RS15125 () | 1943946..1944377 | + | 432 | Protein_1840 | hypothetical protein | - |
| GDK21_RS09555 () | 1944713..1945027 | + | 315 | WP_000420682.1 | YdcP family protein | - |
| GDK21_RS09560 () | 1945043..1945429 | + | 387 | WP_000985015.1 | YdcP family protein | - |
| GDK21_RS09565 () | 1945458..1946066 | + | 609 | Protein_1843 | ATP-binding protein | - |
| GDK21_RS09570 () | 1946095..1947243 | + | 1149 | WP_000323282.1 | replication initiation factor domain-containing protein | - |
| GDK21_RS09575 () | 1947286..1947507 | + | 222 | WP_001009056.1 | hypothetical protein | - |
| GDK21_RS09580 () | 1947624..1948121 | + | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| GDK21_RS09585 () | 1948096..1948602 | + | 507 | WP_000506270.1 | conjugal transfer protein | - |
| GDK21_RS09590 () | 1948586..1951033 | + | 2448 | WP_000331160.1 | ATP-binding protein | - |
| GDK21_RS09595 () | 1951036..1953213 | + | 2178 | WP_000804748.1 | membrane protein | - |
| GDK21_RS09600 () | 1953210..1954211 | + | 1002 | WP_000769868.1 | hypothetical protein | VF |
| GDK21_RS09605 () | 1954208..1955140 | + | 933 | WP_001224318.1 | conjugal transfer protein | - |
| GDK21_RS09610 () | 1955385..1955501 | + | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| GDK21_RS09615 () | 1955517..1957436 | + | 1920 | WP_000691736.1 | Peptide chain release factor 3 | VF |
| GDK21_RS09620 () | 1957555..1957722 | + | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| GDK21_RS09625 () | 1957782..1958135 | - | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| GDK21_RS09635 () | 1958640..1959062 | + | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| GDK21_RS09640 () | 1959059..1959289 | + | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| GDK21_RS09650 () | 1959750..1959953 | + | 204 | WP_000814511.1 | excisionase | - |
| GDK21_RS09655 () | 1960035..1961252 | + | 1218 | WP_001291561.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GDK21_RS09660 () | 1961469..1962257 | + | 789 | WP_000206343.1 | DUF1828 domain-containing protein | - |
| GDK21_RS09665 () | 1963091..1963585 | + | 495 | WP_001253432.1 | hypothetical protein | - |
| GDK21_RS09670 () | 1963663..1963899 | + | 237 | WP_000617704.1 | hypothetical protein | - |
| GDK21_RS09675 () | 1963920..1964696 | + | 777 | WP_000848318.1 | DUF1828 domain-containing protein | - |
| GDK21_RS09685 () | 1965248..1966024 | - | 777 | WP_000736712.1 | hypothetical protein | VF |
| GDK21_RS09690 () | 1966217..1967389 | - | 1173 | WP_000195429.1 | IS256 family transposase IS256 | Transposase |
| GDK21_RS09700 () | 1967639..1968394 | - | 756 | WP_001236362.1 | hypothetical protein | VF |
| GDK21_RS09705 () | 1968433..1969204 | - | 772 | Protein_1867 | hypothetical protein | VF |
| GDK21_RS09710 () | 1969358..1970086 | - | 729 | WP_000713847.1 | hypothetical protein | VF |
| GDK21_RS09715 () | 1970121..1970840 | - | 720 | WP_000821658.1 | hypothetical protein | VF |
| GDK21_RS09725 () | 1971084..1972256 | + | 1173 | WP_000195429.1 | IS256 family transposase IS256 | Transposase |
| GDK21_RS09730 () | 1972453..1973235 | - | 783 | WP_010922839.1 | staphylococcal enterotoxin type O | - |
| GDK21_RS09735 () | 1973466..1974785 | - | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| GDK21_RS09780 () | 1976115..1976669 | - | 555 | WP_000132890.1 | alpha/beta hydrolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|