MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 165300 bp
Accession: NZ_AP018795 Location: 30740..196039 Organism: Acidithiobacillus ferridurans strain JCM 18981 Replicon: chromosome
Accession: NZ_AP018795 Location: 30740..196039 Organism: Acidithiobacillus ferridurans strain JCM 18981 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFERRID_RS00145 () | 26077..28533 | - | 2457 | WP_126604085.1 | transporter | - |
| AFERRID_RS00150 () | 28549..28854 | - | 306 | WP_126604086.1 | VirB3 family type IV secretion system protein | - |
| AFERRID_RS00155 () | 28918..29265 | - | 348 | WP_126604087.1 | TrbC/VirB2 family protein | - |
| AFERRID_RS00160 () | 29399..30028 | - | 630 | WP_126604088.1 | hypothetical protein | - |
| AFERRID_RS00165 () | 30158..31117 | - | 960 | WP_126604089.1 | P-type conjugative transfer ATPase TrbB | - |
| AFERRID_RS00170 () | 31143..32807 | - | 1665 | WP_126604090.1 | hypothetical protein | - |
| AFERRID_RS00175 () | 32804..33133 | - | 330 | WP_126604091.1 | hypothetical protein | - |
| AFERRID_RS00180 () | 33212..33535 | - | 324 | WP_126604092.1 | hypothetical protein | - |
| AFERRID_RS00185 () | 33532..33741 | - | 210 | WP_126604093.1 | hypothetical protein | - |
| AFERRID_RS00190 () | 33825..34280 | - | 456 | WP_126604094.1 | hypothetical protein | - |
| AFERRID_RS00195 () | 34352..36391 | - | 2040 | WP_126604095.1 | type I DNA topoisomerase | - |
| AFERRID_RS00200 () | 36432..37283 | - | 852 | WP_126604096.1 | SET domain-containing protein | - |
| AFERRID_RS00205 () | 37280..37678 | - | 399 | WP_126604097.1 | hypothetical protein | - |
| AFERRID_RS00210 () | 37736..38545 | - | 810 | WP_126604098.1 | hypothetical protein | - |
| AFERRID_RS00215 () | 38653..39636 | - | 984 | WP_126604099.1 | hypothetical protein | - |
| AFERRID_RS00220 () | 39633..40178 | - | 546 | WP_126604100.1 | metal-dependent hydrolase | - |
| AFERRID_RS00225 () | 40308..42419 | - | 2112 | WP_126604101.1 | Autotransporter adhesin BtaE | VF |
| AFERRID_RS00230 () | 42492..43118 | - | 627 | WP_172959303.1 | S26 family signal peptidase | - |
| AFERRID_RS00235 () | 43093..45351 | - | 2259 | WP_126604103.1 | type IV secretory system conjugative DNA transfer family protein | - |
| AFERRID_RS00240 () | 45421..46065 | - | 645 | WP_126604104.1 | hypothetical protein | - |
| AFERRID_RS00245 () | 46194..48884 | - | 2691 | WP_126604105.1 | hypothetical protein | - |
| AFERRID_RS00250 () | 48969..49535 | - | 567 | WP_126604106.1 | hypothetical protein | - |
| AFERRID_RS00255 () | 49624..53358 | - | 3735 | WP_172959304.1 | DUF1738 domain-containing protein | - |
| AFERRID_RS00260 () | 53381..53842 | - | 462 | WP_172959305.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| AFERRID_RS00265 () | 53836..54789 | - | 954 | WP_126604109.1 | DNA adenine methylase | - |
| AFERRID_RS00270 () | 54786..56396 | - | 1611 | WP_126604110.1 | toprim domain-containing protein | - |
| AFERRID_RS00275 () | 57217..58509 | + | 1293 | WP_126604111.1 | APC family permease | - |
| AFERRID_RS00280 () | 58502..59701 | + | 1200 | WP_126604112.1 | acetate/propionate family kinase | - |
| AFERRID_RS00285 () | 59832..62204 | + | 2373 | WP_126604113.1 | phosphoketolase family protein | - |
| AFERRID_RS00290 () | 62201..65374 | + | 3174 | WP_197722459.1 | plasma-membrane proton-efflux P-type ATPase | - |
| AFERRID_RS00305 () | 65374..66114 | + | 741 | WP_197722460.1 | DUF4396 domain-containing protein | - |
| AFERRID_RS00310 () | 66196..67065 | + | 870 | WP_126604114.1 | polyphosphate kinase 2 family protein | - |
| AFERRID_RS00315 () | 67076..68386 | + | 1311 | WP_126604115.1 | hypothetical protein | - |
| AFERRID_RS15225 () | 68465..68722 | - | 258 | WP_197722499.1 | hypothetical protein | - |
| AFERRID_RS00325 () | 68988..70286 | - | 1299 | WP_126604116.1 | class I SAM-dependent methyltransferase | - |
| AFERRID_RS00330 () | 71012..73060 | + | 2049 | WP_126604117.1 | transketolase | - |
| AFERRID_RS00335 () | 73193..74212 | + | 1020 | WP_126604118.1 | 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating | VF |
| AFERRID_RS00340 () | 74214..75629 | + | 1416 | WP_126604119.1 | glucose-6-phosphate dehydrogenase | - |
| AFERRID_RS00345 () | 75613..77436 | + | 1824 | WP_126604120.1 | glycoside hydrolase family 15 protein | - |
| AFERRID_RS00350 () | 77457..78185 | + | 729 | WP_126604121.1 | ROK family protein | - |
| AFERRID_RS00355 () | 78410..78844 | + | 435 | WP_071183027.1 | NADH-quinone oxidoreductase subunit A | - |
| AFERRID_RS00360 () | 78841..79479 | + | 639 | WP_071183026.1 | NADH-quinone oxidoreductase subunit B | - |
| AFERRID_RS00365 () | 79757..81508 | + | 1752 | WP_126604122.1 | NADH-quinone oxidoreductase subunit C/D | - |
| AFERRID_RS00370 () | 81517..81981 | + | 465 | WP_065414331.1 | NADH-quinone oxidoreductase subunit NuoE | - |
| AFERRID_RS00375 () | 81974..83269 | + | 1296 | WP_197722461.1 | SLBB domain-containing protein | - |
| AFERRID_RS00380 () | 83270..85987 | + | 2718 | WP_071183023.1 | NADH-quinone oxidoreductase subunit NuoG | - |
| AFERRID_RS00385 () | 85984..86940 | + | 957 | WP_071183022.1 | NADH-quinone oxidoreductase subunit NuoH | - |
| AFERRID_RS00390 () | 86959..87492 | + | 534 | WP_035195059.1 | NADH-quinone oxidoreductase subunit NuoI | - |
| AFERRID_RS00395 () | 87541..88044 | + | 504 | WP_071183021.1 | NADH-quinone oxidoreductase subunit J | - |
| AFERRID_RS00400 () | 88048..88356 | + | 309 | WP_035195063.1 | NADH-quinone oxidoreductase subunit NuoK | - |
| AFERRID_RS00405 () | 88358..90259 | + | 1902 | WP_071183020.1 | NADH-quinone oxidoreductase subunit L | - |
| AFERRID_RS00410 () | 90256..91764 | + | 1509 | WP_071183019.1 | NADH-quinone oxidoreductase subunit M | - |
| AFERRID_RS00415 () | 91761..93209 | + | 1449 | WP_071183018.1 | NADH-quinone oxidoreductase subunit N | - |
| AFERRID_RS00420 () | 93251..93679 | + | 429 | WP_126604123.1 | class I SAM-dependent methyltransferase | - |
| AFERRID_RS00425 () | 93676..94281 | + | 606 | WP_083386388.1 | histidine phosphatase family protein | - |
| AFERRID_RS00430 () | 94848..97211 | + | 2364 | WP_126604124.1 | glycosyl hydrolase | - |
| AFERRID_RS00435 () | 97208..97993 | + | 786 | WP_014030457.1 | Glucose 1-dehydrogenase 1 | VF |
| AFERRID_RS00440 () | 97996..99513 | + | 1518 | WP_071182373.1 | GMC family oxidoreductase | - |
| AFERRID_RS00445 () | 99510..100655 | + | 1146 | WP_126604125.1 | MFS transporter | - |
| AFERRID_RS00450 () | 100997..101920 | - | 924 | WP_126604126.1 | LysR family transcriptional regulator | - |
| AFERRID_RS00455 () | 102010..103854 | + | 1845 | WP_126604127.1 | chloride channel protein | - |
| AFERRID_RS00460 () | 104071..105462 | - | 1392 | WP_126605647.1 | transposase | - |
| AFERRID_RS00465 () | 105734..106084 | + | 351 | WP_126604128.1 | cytochrome b/b6 domain-containing protein | - |
| AFERRID_RS00470 () | 106275..107666 | + | 1392 | WP_071183047.1 | Inner membrane transport protein YajR | VF |
| AFERRID_RS00475 () | 107739..108077 | + | 339 | WP_071183046.1 | hypothetical protein | - |
| AFERRID_RS00480 () | 108188..108520 | + | 333 | WP_071183045.1 | hypothetical protein | - |
| AFERRID_RS00485 () | 108798..110549 | + | 1752 | WP_083386400.1 | chloride channel protein | - |
| AFERRID_RS00490 () | 110967..111935 | + | 969 | WP_126604129.1 | IS110 family transposase ISStma4 | Transposase |
| AFERRID_RS00495 () | 112019..113371 | + | 1353 | WP_126604130.1 | IS1182 family transposase ISAzo2 | Transposase |
| AFERRID_RS00500 () | 113551..113838 | + | 288 | WP_126604131.1 | hypothetical protein | - |
| AFERRID_RS00505 () | 113820..114176 | + | 357 | WP_083386395.1 | hypothetical protein | - |
| AFERRID_RS15075 () | 114198..114374 | + | 177 | WP_172804386.1 | hypothetical protein | - |
| AFERRID_RS00515 () | 114760..116463 | - | 1704 | WP_126604133.1 | IS1634 family transposase ISCARN9 | Transposase |
| AFERRID_RS00525 () | 116686..116922 | - | 237 | Protein_96 | IS66 family transposase ISCARN104 | Transposase |
| AFERRID_RS00530 () | 116968..117318 | - | 351 | WP_126604134.1 | IS66 family transposase ISCARN104 | Transposase |
| AFERRID_RS00535 () | 117309..117638 | - | 330 | WP_126604135.1 | IS66 family transposase ISCARN104 | Transposase |
| AFERRID_RS00540 () | 117819..119192 | - | 1374 | WP_126604136.1 | glutamate decarboxylase | - |
| AFERRID_RS15230 () | 119254..119871 | - | 618 | WP_197722462.1 | amino acid permease | - |
| AFERRID_RS15235 () | 119892..120698 | - | 807 | WP_197722463.1 | Glutamate/gamma-aminobutyrate antiporter | VF |
| AFERRID_RS00550 () | 120803..121039 | + | 237 | Protein_102 | IS1634 family transposase | - |
| AFERRID_RS00560 () | 122029..122430 | + | 402 | WP_126604138.1 | hypothetical protein | - |
| AFERRID_RS00565 () | 122824..123942 | + | 1119 | WP_172959390.1 | paraquat-inducible protein A | - |
| AFERRID_RS00570 () | 123935..125599 | + | 1665 | WP_126604140.1 | MCE family protein | - |
| AFERRID_RS00575 () | 125596..126180 | + | 585 | WP_126604141.1 | PqiC family protein | - |
| AFERRID_RS00580 () | 126177..127709 | + | 1533 | WP_126604142.1 | MFS transporter | - |
| AFERRID_RS00585 () | 127839..128696 | - | 858 | WP_065974391.1 | DUF4396 domain-containing protein | - |
| AFERRID_RS00590 () | 128912..129157 | - | 246 | WP_014028167.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| AFERRID_RS00595 () | 129178..129384 | - | 207 | WP_014028166.1 | heavy-metal-associated domain-containing protein | - |
| AFERRID_RS00600 () | 129447..129842 | - | 396 | WP_065974388.1 | DUF302 domain-containing protein | - |
| AFERRID_RS00605 () | 129870..132380 | - | 2511 | WP_126604143.1 | heavy metal translocating P-type ATPase | - |
| AFERRID_RS00610 () | 132805..133974 | - | 1170 | Protein_113 | glucose-6-phosphate dehydrogenase | - |
| AFERRID_RS00615 () | 134599..134937 | + | 339 | Protein_114 | reverse transcriptase N-terminal domain-containing protein | - |
| AFERRID_RS00620 () | 135081..135284 | - | 204 | WP_126604145.1 | hypothetical protein | - |
| AFERRID_RS00625 () | 135281..136081 | - | 801 | WP_126604146.1 | ATP-binding protein | - |
| AFERRID_RS00630 () | 136078..136840 | - | 763 | Protein_117 | IS481 family transposase ISBst1 | Transposase |
| AFERRID_RS00635 () | 136872..137156 | + | 285 | WP_126604148.1 | hypothetical protein | - |
| AFERRID_RS00640 () | 137156..138214 | + | 1059 | WP_126604149.1 | IS91 family transposase ISTha3 | Transposase |
| AFERRID_RS00650 () | 138560..139216 | + | 657 | WP_126604150.1 | IS481 family transposase ISBst1 | Transposase |
| AFERRID_RS00655 () | 139213..140013 | + | 801 | WP_126604151.1 | hypothetical protein | VF |
| AFERRID_RS00660 () | 140010..140216 | + | 207 | WP_126604152.1 | hypothetical protein | - |
| AFERRID_RS00665 () | 141158..143101 | - | 1944 | WP_126604153.1 | relaxase/mobilization nuclease domain-containing protein | - |
| AFERRID_RS00670 () | 143098..143430 | - | 333 | WP_126604154.1 | hypothetical protein | - |
| AFERRID_RS00675 () | 143996..144772 | + | 777 | WP_126604155.1 | antA/AntB antirepressor family protein | - |
| AFERRID_RS00680 () | 144776..145456 | + | 681 | WP_126604156.1 | hypothetical protein | - |
| AFERRID_RS00685 () | 145522..146313 | + | 792 | WP_126604157.1 | hypothetical protein | - |
| AFERRID_RS00690 () | 146306..147130 | + | 825 | WP_126604158.1 | hypothetical protein | - |
| AFERRID_RS00695 () | 147143..147718 | + | 576 | WP_126604159.1 | hypothetical protein | - |
| AFERRID_RS00700 () | 147735..148232 | + | 498 | WP_126604160.1 | hypothetical protein | - |
| AFERRID_RS00705 () | 148358..149578 | + | 1221 | WP_126604161.1 | conjugal transfer protein TraB | - |
| AFERRID_RS00715 () | 149733..150248 | + | 516 | WP_126604162.1 | YfbU family protein | - |
| AFERRID_RS00720 () | 150274..150618 | + | 345 | WP_126604163.1 | hypothetical protein | - |
| AFERRID_RS00725 () | 150648..151817 | + | 1170 | WP_197722464.1 | DNA cytosine methyltransferase | - |
| AFERRID_RS00730 () | 151818..152720 | + | 903 | WP_126604164.1 | restriction endonuclease | - |
| AFERRID_RS00735 () | 152925..153632 | - | 708 | WP_126604165.1 | hypothetical protein | - |
| AFERRID_RS00740 () | 154250..154693 | - | 444 | WP_126604166.1 | hypothetical protein | - |
| AFERRID_RS00745 () | 155068..158106 | - | 3039 | WP_126604167.1 | hypothetical protein | - |
| AFERRID_RS00750 () | 158482..158778 | - | 297 | WP_126604168.1 | hypothetical protein | - |
| AFERRID_RS00755 () | 158924..159622 | - | 699 | WP_126604169.1 | Type IV secretion system protein virB1 | VF |
| AFERRID_RS00760 () | 159619..160254 | - | 636 | WP_126604170.1 | hypothetical protein | - |
| AFERRID_RS00765 () | 160682..162433 | - | 1752 | WP_126604171.1 | hypothetical protein | - |
| AFERRID_RS15240 () | 162531..162833 | - | 303 | WP_197722465.1 | hypothetical protein | - |
| AFERRID_RS00775 () | 162941..163675 | + | 735 | WP_126604172.1 | LexA family transcriptional regulator | - |
| AFERRID_RS00780 () | 163763..163969 | + | 207 | WP_126604173.1 | hypothetical protein | - |
| AFERRID_RS00785 () | 164533..164793 | + | 261 | WP_126604174.1 | pyocin activator PrtN family protein | - |
| AFERRID_RS00790 () | 164824..165084 | - | 261 | WP_126604175.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| AFERRID_RS00795 () | 165077..165331 | - | 255 | WP_126605650.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| AFERRID_RS00800 () | 165870..167144 | + | 1275 | WP_172959307.1 | MFS transporter | - |
| AFERRID_RS00805 () | 167215..169620 | - | 2406 | WP_126604177.1 | DNA topoisomerase IV subunit A | - |
| AFERRID_RS00810 () | 169638..171608 | - | 1971 | WP_126604178.1 | type IIA DNA topoisomerase subunit B | - |
| AFERRID_RS00815 () | 171737..173044 | - | 1308 | WP_113525512.1 | two-component sensor histidine kinase | - |
| AFERRID_RS00820 () | 173041..173703 | - | 663 | WP_126604179.1 | Transcriptional regulatory protein QseB | VF |
| AFERRID_RS00825 () | 173781..174092 | - | 312 | WP_113525510.1 | PepSY domain-containing protein | - |
| AFERRID_RS00830 () | 174249..175325 | - | 1077 | WP_126604180.1 | hypothetical protein | - |
| AFERRID_RS00835 () | 175368..178394 | - | 3027 | WP_126604181.1 | efflux RND transporter permease subunit | - |
| AFERRID_RS00840 () | 178394..179434 | - | 1041 | WP_126604182.1 | efflux RND transporter periplasmic adaptor subunit | - |
| AFERRID_RS00845 () | 179431..180780 | - | 1350 | WP_126604183.1 | TolC family protein | - |
| AFERRID_RS00850 () | 181527..183890 | - | 2364 | WP_126604184.1 | TonB-dependent receptor | - |
| AFERRID_RS00855 () | 184121..185071 | - | 951 | WP_126605651.1 | hypothetical protein | - |
| AFERRID_RS00860 () | 185148..185822 | + | 675 | WP_113525503.1 | Transcriptional activator protein CzcR | VF |
| AFERRID_RS00865 () | 185800..187241 | + | 1442 | Protein_162 | heavy metal sensor histidine kinase | - |
| AFERRID_RS00870 () | 187421..188725 | + | 1305 | WP_126604185.1 | TolC family protein | - |
| AFERRID_RS00875 () | 188722..189738 | + | 1017 | WP_126604186.1 | efflux RND transporter periplasmic adaptor subunit | - |
| AFERRID_RS00880 () | 189735..192764 | + | 3030 | Protein_165 | efflux RND transporter permease subunit | - |
| AFERRID_RS00885 () | 192874..193290 | + | 417 | WP_126604187.1 | hypothetical protein | - |
| AFERRID_RS00890 () | 193462..194511 | + | 1050 | WP_113525499.1 | DMT family transporter | - |
| AFERRID_RS00895 () | 194578..194901 | + | 324 | WP_197722466.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| AFERRID_RS00900 () | 194908..195339 | + | 432 | WP_126604188.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| AFERRID_RS00905 () | 195326..195694 | + | 369 | WP_126604189.1 | hypothetical protein | - |
| AFERRID_RS00910 () | 195728..199294 | - | 3567 | WP_126604190.1 | pilus assembly protein PilY | - |
| AFERRID_RS00915 () | 199309..199902 | - | 594 | WP_126604191.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|