MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 169550 bp
Accession: NZ_AP018795 Location: 2295375..2464924 Organism: Acidithiobacillus ferridurans strain JCM 18981 Replicon: chromosome
Accession: NZ_AP018795 Location: 2295375..2464924 Organism: Acidithiobacillus ferridurans strain JCM 18981 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFERRID_RS11820 () | 2291333..2293714 | + | 2382 | WP_126605260.1 | sucrose synthase | - |
| AFERRID_RS11825 () | 2293859..2294383 | - | 525 | WP_126605261.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| AFERRID_RS11830 () | 2294535..2295188 | - | 654 | WP_126605262.1 | DUF202 domain-containing protein | - |
| AFERRID_RS11840 () | 2295443..2296438 | - | 996 | WP_126605263.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| AFERRID_RS11845 () | 2296583..2296837 | - | 255 | WP_012536604.1 | hypothetical protein | - |
| AFERRID_RS11850 () | 2297037..2297270 | - | 234 | WP_126605264.1 | hypothetical protein | - |
| AFERRID_RS11855 () | 2297384..2298148 | - | 765 | WP_126605265.1 | S24 family peptidase | - |
| AFERRID_RS11860 () | 2298230..2298454 | + | 225 | WP_029316360.1 | helix-turn-helix domain-containing protein | - |
| AFERRID_RS11865 () | 2298506..2299573 | + | 1068 | WP_126605266.1 | DUF1376 domain-containing protein | - |
| AFERRID_RS11870 () | 2299584..2300438 | + | 855 | WP_126605267.1 | ATP-binding protein | - |
| AFERRID_RS11875 () | 2300435..2301631 | + | 1197 | WP_126605268.1 | hypothetical protein | - |
| AFERRID_RS11880 () | 2301628..2302518 | + | 891 | WP_126605269.1 | DNA adenine methylase | - |
| AFERRID_RS11885 () | 2302581..2303075 | + | 495 | WP_126605270.1 | single-stranded DNA-binding protein | - |
| AFERRID_RS11890 () | 2303983..2304489 | + | 507 | WP_197722436.1 | DUF4231 domain-containing protein | - |
| AFERRID_RS11895 () | 2304486..2305469 | + | 984 | WP_126605271.1 | hypothetical protein | - |
| AFERRID_RS11900 () | 2305466..2306179 | + | 714 | WP_126605272.1 | hypothetical protein | - |
| AFERRID_RS11905 () | 2306176..2306769 | + | 594 | WP_126605273.1 | 7-cyano-7-deazaguanine synthase | - |
| AFERRID_RS11910 () | 2306771..2307271 | + | 501 | WP_126605274.1 | TIR domain-containing protein | - |
| AFERRID_RS11915 () | 2308049..2308249 | - | 201 | Protein_2307 | IS3 family transposase ISStma17 | Transposase |
| AFERRID_RS11925 () | 2310317..2311234 | - | 918 | WP_126605276.1 | Mrr restriction system protein | - |
| AFERRID_RS11930 () | 2311236..2313542 | - | 2307 | WP_126605277.1 | DEAD/DEAH box helicase family protein | - |
| AFERRID_RS11935 () | 2313552..2314592 | - | 1041 | WP_197722437.1 | restriction endonuclease subunit S | - |
| AFERRID_RS11940 () | 2314754..2316208 | - | 1455 | WP_126605279.1 | type I restriction-modification system subunit M | - |
| AFERRID_RS11945 () | 2316308..2316682 | - | 375 | WP_126605280.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| AFERRID_RS11950 () | 2316679..2316876 | - | 198 | WP_012536620.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| AFERRID_RS15310 () | 2317232..2317411 | - | 180 | WP_197722438.1 | hypothetical protein | - |
| AFERRID_RS11955 () | 2317745..2318419 | + | 675 | WP_126605281.1 | hypothetical protein | - |
| AFERRID_RS11960 () | 2318416..2318739 | + | 324 | WP_126605282.1 | integration host factor subunit alpha | - |
| AFERRID_RS11965 () | 2318806..2319081 | + | 276 | WP_126605283.1 | HU family DNA-binding protein | - |
| AFERRID_RS11970 () | 2319093..2319440 | + | 348 | WP_126605284.1 | hypothetical protein | - |
| AFERRID_RS11975 () | 2319449..2319670 | + | 222 | WP_009560828.1 | HU family DNA-binding protein | - |
| AFERRID_RS11985 () | 2320273..2320407 | - | 135 | Protein_2321 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| AFERRID_RS11990 () | 2320394..2320663 | - | 270 | WP_126605285.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| AFERRID_RS11995 () | 2320688..2321584 | - | 897 | WP_126605286.1 | hypothetical protein | - |
| AFERRID_RS12000 () | 2321846..2322337 | + | 492 | WP_126605287.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| AFERRID_RS12005 () | 2322407..2322949 | + | 543 | WP_041838684.1 | hypothetical protein | - |
| AFERRID_RS12010 () | 2322939..2323910 | + | 972 | WP_126605288.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| AFERRID_RS12015 () | 2324046..2328404 | + | 4359 | WP_126605289.1 | DUF3560 domain-containing protein | - |
| AFERRID_RS12020 () | 2328465..2329664 | + | 1200 | WP_126605290.1 | hypothetical protein | - |
| AFERRID_RS12025 () | 2329661..2329939 | + | 279 | WP_126605291.1 | hypothetical protein | - |
| AFERRID_RS12030 () | 2329949..2330356 | + | 408 | WP_126605292.1 | hypothetical protein | - |
| AFERRID_RS12035 () | 2330379..2331355 | + | 977 | Protein_2331 | hypothetical protein | - |
| AFERRID_RS12040 () | 2331419..2332198 | + | 780 | WP_126605293.1 | hypothetical protein | - |
| AFERRID_RS12045 () | 2332198..2333748 | + | 1551 | WP_126605294.1 | DUF3363 domain-containing protein | - |
| AFERRID_RS12055 () | 2334978..2335622 | + | 645 | WP_126605721.1 | hypothetical protein | - |
| AFERRID_RS12065 () | 2336039..2336233 | - | 195 | WP_126605295.1 | hypothetical protein | - |
| AFERRID_RS12070 () | 2336778..2336979 | + | 202 | Protein_2336 | addiction module killer protein | - |
| AFERRID_RS12075 () | 2336983..2337282 | + | 300 | WP_012536655.1 | putative addiction module antidote protein | - |
| AFERRID_RS12080 () | 2337391..2337675 | + | 285 | WP_126605296.1 | hypothetical protein | - |
| AFERRID_RS12085 () | 2337708..2339099 | - | 1392 | WP_126605647.1 | transposase | - |
| AFERRID_RS12090 () | 2339475..2339927 | + | 453 | WP_126605297.1 | hypothetical protein | - |
| AFERRID_RS12095 () | 2339924..2340892 | + | 969 | WP_126605298.1 | Type IV secretion system protein VirB11 | VF |
| AFERRID_RS12100 () | 2340985..2341371 | + | 387 | WP_126605299.1 | TrbC/VirB2 family protein | - |
| AFERRID_RS12105 () | 2341375..2341752 | + | 378 | WP_126605300.1 | VirB3 family type IV secretion system protein | - |
| AFERRID_RS12110 () | 2341752..2344274 | + | 2523 | WP_126605301.1 | conjugal transfer protein TrbE | - |
| AFERRID_RS12115 () | 2344271..2344552 | + | 282 | WP_126605302.1 | hypothetical protein | - |
| AFERRID_RS12120 () | 2344636..2345376 | + | 741 | WP_126605303.1 | P-type conjugative transfer protein TrbJ | - |
| AFERRID_RS12125 () | 2345388..2345642 | + | 255 | WP_126605722.1 | EexN family lipoprotein | - |
| AFERRID_RS12130 () | 2345658..2347325 | + | 1668 | Protein_2348 | P-type conjugative transfer protein TrbL | - |
| AFERRID_RS12135 () | 2347628..2347867 | + | 240 | Protein_2349 | hypothetical protein | - |
| AFERRID_RS12145 () | 2348041..2348508 | - | 468 | WP_126605304.1 | phosphate-starvation-inducible PsiE family protein | - |
| AFERRID_RS12150 () | 2348875..2350359 | - | 1485 | WP_126605305.1 | Putative serine protease HtrA | VF |
| AFERRID_RS12155 () | 2350410..2350673 | - | 264 | WP_126605306.1 | hypothetical protein | - |
| AFERRID_RS12160 () | 2350860..2351306 | - | 447 | WP_009569199.1 | Spore protein SP21 | VF |
| AFERRID_RS12165 () | 2351641..2352396 | - | 756 | WP_049756717.1 | hypothetical protein ; Integrase | Integrase |
| AFERRID_RS12170 () | 2352584..2353465 | + | 882 | WP_126605307.1 | NAD(P)-dependent oxidoreductase | - |
| AFERRID_RS12175 () | 2353495..2355762 | + | 2268 | WP_126605308.1 | FdhF/YdeP family oxidoreductase | - |
| AFERRID_RS12180 () | 2355752..2356021 | + | 270 | WP_009569193.1 | hypothetical protein | - |
| AFERRID_RS12185 () | 2356000..2356806 | + | 807 | WP_126605309.1 | formate dehydrogenase accessory sulfurtransferase FdhD | - |
| AFERRID_RS12190 () | 2356857..2357642 | - | 786 | Protein_2359 | IS630 family transposase ISPa47 | Transposase |
| AFERRID_RS12195 () | 2357807..2358835 | - | 1029 | WP_012607158.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| AFERRID_RS12200 () | 2358894..2360567 | - | 1674 | WP_197722439.1 | hydroxylamine reductase | - |
| AFERRID_RS12205 () | 2360939..2361607 | + | 669 | WP_126605724.1 | Crp/Fnr family transcriptional regulator | - |
| AFERRID_RS12210 () | 2361873..2362901 | - | 1029 | WP_012607160.1 | hypothetical protein | - |
| AFERRID_RS12215 () | 2363028..2365505 | - | 2478 | WP_126605310.1 | DUF2309 domain-containing protein | - |
| AFERRID_RS12220 () | 2365508..2367148 | - | 1641 | WP_009566373.1 | NADH dehydrogenase | - |
| AFERRID_RS12225 () | 2367452..2368702 | - | 1251 | WP_126605311.1 | glycolate oxidase subunit GlcF | - |
| AFERRID_RS12230 () | 2368712..2369824 | - | 1113 | WP_126605312.1 | glycolate oxidase subunit GlcE | - |
| AFERRID_RS12235 () | 2369778..2371244 | - | 1467 | WP_126605313.1 | FAD-binding protein | - |
| AFERRID_RS12240 () | 2371259..2372596 | - | 1338 | WP_126605314.1 | four-carbon acid sugar kinase family protein | - |
| AFERRID_RS12245 () | 2372609..2374828 | - | 2220 | WP_126605315.1 | phosphoketolase | - |
| AFERRID_RS12250 () | 2374926..2375705 | + | 780 | WP_126605316.1 | IclR family transcriptional regulator | - |
| AFERRID_RS12255 () | 2376005..2376274 | + | 270 | WP_012536684.1 | hypothetical protein | - |
| AFERRID_RS12260 () | 2376341..2377219 | + | 879 | WP_126605317.1 | hypothetical protein | - |
| AFERRID_RS12265 () | 2377275..2377835 | + | 561 | WP_126605318.1 | hypothetical protein | - |
| AFERRID_RS12270 () | 2377903..2378940 | + | 1038 | WP_012607167.1 | dihydroorotase | - |
| AFERRID_RS12275 () | 2379022..2380695 | + | 1674 | WP_126605725.1 | dihydroxy-acid dehydratase | - |
| AFERRID_RS12280 () | 2380699..2381685 | - | 987 | WP_012536689.1 | threonylcarbamoyl-AMP synthase | - |
| AFERRID_RS12285 () | 2381880..2382668 | - | 789 | WP_009561320.1 | dethiobiotin synthase | - |
| AFERRID_RS12290 () | 2382665..2383846 | - | 1182 | WP_012536692.1 | class II fructose-bisphosphate aldolase | - |
| AFERRID_RS12295 () | 2383972..2386323 | - | 2352 | WP_126605319.1 | VWA domain-containing protein | - |
| AFERRID_RS12300 () | 2386339..2387142 | - | 804 | WP_126605320.1 | CbbQ/NirQ/NorQ/GpvN family protein | - |
| AFERRID_RS12310 () | 2387418..2388053 | - | 636 | WP_126605321.1 | AAA family ATPase | - |
| AFERRID_RS12315 () | 2388090..2388368 | - | 279 | WP_012536697.1 | hypothetical protein | - |
| AFERRID_RS12320 () | 2388365..2388808 | - | 444 | WP_012607171.1 | bacterioferritin | - |
| AFERRID_RS12325 () | 2388822..2389160 | - | 339 | WP_012536698.1 | BMC domain-containing protein | - |
| AFERRID_RS12330 () | 2389206..2389502 | - | 297 | WP_012536699.1 | BMC domain-containing protein | - |
| AFERRID_RS12335 () | 2389547..2389843 | - | 297 | WP_012536700.1 | BMC domain-containing protein | - |
| AFERRID_RS12340 () | 2389875..2390141 | - | 267 | WP_009567525.1 | carboxysome peptide B | - |
| AFERRID_RS12345 () | 2390152..2390400 | - | 249 | WP_009567526.1 | carboxysome peptide A | - |
| AFERRID_RS12350 () | 2390397..2391998 | - | 1602 | WP_126605322.1 | carboxysome shell carbonic anhydrase | - |
| AFERRID_RS12355 () | 2392054..2394353 | - | 2300 | Protein_2391 | CsoS2 family carboxysome shell protein | - |
| AFERRID_RS12360 () | 2394424..2394756 | - | 333 | WP_009567528.1 | ribulose bisphosphate carboxylase small subunit | - |
| AFERRID_RS12365 () | 2394848..2396269 | - | 1422 | WP_012536704.1 | form I ribulose bisphosphate carboxylase large subunit | - |
| AFERRID_RS12370 () | 2396414..2397340 | + | 927 | WP_041647345.1 | LysR family transcriptional regulator | - |
| AFERRID_RS12375 () | 2397784..2398641 | + | 858 | WP_126605323.1 | DUF2236 domain-containing protein | - |
| AFERRID_RS12380 () | 2398951..2399619 | + | 669 | WP_126605324.1 | type IV secretion system protein | - |
| AFERRID_RS12385 () | 2399632..2400762 | + | 1131 | WP_126605325.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| AFERRID_RS12390 () | 2400764..2401795 | + | 1032 | WP_126605326.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| AFERRID_RS12395 () | 2401798..2403261 | + | 1464 | WP_126605327.1 | Type IV secretion system protein virB10 | VF |
| AFERRID_RS12400 () | 2403272..2403574 | + | 303 | WP_126605328.1 | hypothetical protein | - |
| AFERRID_RS12405 () | 2403571..2404227 | + | 657 | WP_126605329.1 | Type IV secretion system protein virB1 | VF |
| AFERRID_RS12410 () | 2404238..2406724 | + | 2487 | WP_126605330.1 | Conjugal transfer protein TraG | VF |
| AFERRID_RS12415 () | 2406834..2407028 | + | 195 | WP_009569339.1 | hypothetical protein | - |
| AFERRID_RS12420 () | 2407030..2407325 | + | 296 | Protein_2404 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| AFERRID_RS15315 () | 2407847..2408821 | + | 975 | WP_197722498.1 | hypothetical protein | - |
| AFERRID_RS12435 () | 2408886..2412323 | + | 3438 | WP_126605331.1 | EAL domain-containing protein | - |
| AFERRID_RS12440 () | 2412461..2413171 | - | 711 | WP_009566825.1 | PilZ domain-containing protein | - |
| AFERRID_RS12445 () | 2413342..2415981 | - | 2640 | WP_126605332.1 | putative signaling protein | VF |
| AFERRID_RS12455 () | 2416831..2417367 | - | 537 | Protein_2409 | GTP-binding protein | - |
| AFERRID_RS12460 () | 2418446..2418961 | - | 516 | WP_126605726.1 | acyloxyacyl hydrolase | - |
| AFERRID_RS12465 () | 2419325..2419822 | - | 498 | WP_126605333.1 | hypothetical protein | - |
| AFERRID_RS12470 () | 2419921..2420826 | - | 906 | WP_126605334.1 | DMT family transporter | - |
| AFERRID_RS12475 () | 2420860..2422209 | - | 1350 | WP_126605335.1 | glutathione-disulfide reductase | - |
| AFERRID_RS12480 () | 2422289..2422828 | - | 540 | WP_126605336.1 | hypothetical protein | - |
| AFERRID_RS15320 () | 2423138..2423473 | - | 336 | WP_197722491.1 | OsmC family protein | - |
| AFERRID_RS12490 () | 2423813..2424046 | - | 234 | WP_126605338.1 | hypothetical protein | - |
| AFERRID_RS12495 () | 2424071..2424688 | - | 618 | WP_126605339.1 | glutathione transferase GstA | - |
| AFERRID_RS12500 () | 2425029..2425397 | + | 369 | WP_126605727.1 | DsrE family protein | - |
| AFERRID_RS12505 () | 2425526..2425945 | - | 420 | WP_126605340.1 | hypothetical protein | - |
| AFERRID_RS12510 () | 2426290..2426643 | + | 354 | WP_126605341.1 | winged helix-turn-helix transcriptional regulator | - |
| AFERRID_RS12515 () | 2426826..2427509 | - | 684 | WP_126605342.1 | alpha/beta hydrolase | - |
| AFERRID_RS12520 () | 2427502..2430498 | - | 2997 | WP_172959374.1 | hypothetical protein ; Integrase | Integrase |
| AFERRID_RS12525 () | 2430506..2431882 | - | 1377 | WP_126605728.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| AFERRID_RS12530 () | 2432081..2432443 | - | 363 | Protein_2424 | GTP-binding protein | - |
| AFERRID_RS12535 () | 2432771..2433028 | - | 258 | WP_012607192.1 | hypothetical protein | - |
| AFERRID_RS12540 () | 2433112..2434356 | - | 1245 | WP_126605344.1 | ParB/RepB/Spo0J family partition protein | - |
| AFERRID_RS12545 () | 2434358..2435128 | - | 771 | WP_126605345.1 | ParA family protein | - |
| AFERRID_RS12550 () | 2435107..2435547 | - | 441 | WP_009563488.1 | hypothetical protein | - |
| AFERRID_RS12555 () | 2435677..2436045 | + | 369 | WP_009563487.1 | cytochrome P460 family protein | - |
| AFERRID_RS12560 () | 2436056..2437054 | - | 999 | WP_009563486.1 | aldo/keto reductase | - |
| AFERRID_RS12565 () | 2438315..2440444 | + | 2130 | WP_126605729.1 | putative signaling protein | VF |
| AFERRID_RS12570 () | 2440571..2441116 | - | 546 | WP_012607196.1 | S26 family signal peptidase | - |
| AFERRID_RS12575 () | 2441139..2441528 | + | 390 | WP_197722440.1 | hypothetical protein | - |
| AFERRID_RS12580 () | 2441509..2441850 | + | 342 | WP_009566058.1 | transcriptional regulator | - |
| AFERRID_RS12585 () | 2441858..2442070 | - | 213 | WP_080513196.1 | hypothetical protein | - |
| AFERRID_RS12590 () | 2442033..2442326 | - | 294 | WP_126605346.1 | hypothetical protein | - |
| AFERRID_RS12595 () | 2442375..2443685 | - | 1311 | WP_126605347.1 | conjugal transfer protein TraB | - |
| AFERRID_RS12605 () | 2444186..2444629 | + | 444 | WP_009567290.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| AFERRID_RS12610 () | 2444735..2445031 | + | 297 | Protein_2439 | putative addiction module antidote protein | - |
| AFERRID_RS12615 () | 2445223..2446614 | - | 1392 | WP_126605647.1 | transposase | - |
| AFERRID_RS12620 () | 2447342..2447590 | - | 249 | WP_126605348.1 | hypothetical protein | - |
| AFERRID_RS12625 () | 2447587..2449638 | - | 2052 | WP_126605349.1 | DNA topoisomerase 3 | - |
| AFERRID_RS12630 () | 2450094..2451731 | - | 1638 | WP_126605350.1 | IS66 family transposase ISAfe4 | Transposase |
| AFERRID_RS12635 () | 2451781..2452128 | - | 348 | WP_012536650.1 | IS66 family transposase ISAfe4 | Transposase |
| AFERRID_RS12640 () | 2452119..2452451 | - | 333 | WP_126605351.1 | IS66 family transposase ISAfe4 | Transposase |
| AFERRID_RS12645 () | 2452523..2453335 | + | 813 | Protein_2446 | glutathione-dependent disulfide-bond oxidoreductase | - |
| AFERRID_RS12650 () | 2453671..2453793 | + | 123 | WP_126605352.1 | IS21 family transposase ISSsp4 | Transposase |
| AFERRID_RS12655 () | 2453853..2455399 | + | 1547 | WP_126605353.1 | IS3 family transposase ISAfe5 | Transposase |
| AFERRID_RS12660 () | 2455447..2456829 | + | 1383 | WP_197722441.1 | IS21 family transposase ISMdi27 | Transposase |
| AFERRID_RS12665 () | 2456822..2457559 | + | 738 | WP_126605354.1 | IS21 family transposase ISPa36 | Transposase |
| AFERRID_RS12670 () | 2457865..2458449 | + | 585 | WP_126605355.1 | carbonic anhydrase | - |
| AFERRID_RS12675 () | 2458675..2458884 | - | 210 | WP_126605356.1 | DUF4926 domain-containing protein | - |
| AFERRID_RS12680 () | 2458881..2459294 | - | 414 | WP_126605730.1 | hypothetical protein | - |
| AFERRID_RS12685 () | 2459508..2461145 | - | 1638 | WP_126605357.1 | IS66 family transposase ISAfe4 | Transposase |
| AFERRID_RS12690 () | 2461195..2461542 | - | 348 | WP_012536650.1 | IS66 family transposase ISAfe4 | Transposase |
| AFERRID_RS12695 () | 2461533..2461865 | - | 333 | WP_012536651.1 | IS66 family transposase ISAfe4 | Transposase |
| AFERRID_RS12700 () | 2462023..2463009 | - | 987 | WP_126605358.1 | EcsC family protein | - |
| AFERRID_RS12705 () | 2463450..2463755 | - | 306 | WP_126605359.1 | hypothetical protein | - |
| AFERRID_RS15200 () | 2463985..2464158 | + | 174 | WP_172959375.1 | hypothetical protein | - |
| AFERRID_RS12710 () | 2464145..2464675 | + | 531 | WP_126605360.1 | hypothetical protein | - |
| AFERRID_RS12715 () | 2465142..2467751 | - | 2610 | WP_113525716.1 | DNA mismatch repair protein MutS | - |
| AFERRID_RS12720 () | 2467777..2468013 | - | 237 | WP_113525715.1 | YdcH family protein | - |
| AFERRID_RS12725 () | 2468231..2468323 | + | 93 | WP_113525714.1 | hypothetical protein | - |
| AFERRID_RS12730 () | 2468339..2469583 | + | 1245 | WP_113525713.1 | glycosyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|