MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 123851 bp
Accession: NZ_AP018722 Location: 1807934..1931784 Organism: Thiomicrorhabdus aquaedulcis strain HaS4 Replicon: chromosome
Accession: NZ_AP018722 Location: 1807934..1931784 Organism: Thiomicrorhabdus aquaedulcis strain HaS4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EP181_RS08215 () | 1803439..1804992 | - | 1554 | WP_127471876.1 | pilus assembly protein N-terminal domain-containing protein | - |
| EP181_RS08220 () | 1805157..1806047 | - | 891 | WP_127471207.1 | Flp pilus assembly protein CpaB | - |
| EP181_RS08225 () | 1806153..1806626 | - | 474 | WP_127471208.1 | hypothetical protein | - |
| EP181_RS08230 () | 1806669..1806878 | - | 210 | WP_127471209.1 | Flp family type IVb pilin | - |
| EP181_RS08235 () | 1807249..1807755 | - | 507 | WP_127471210.1 | heme-binding protein | - |
| EP181_RS08240 () | 1807956..1808222 | + | 267 | WP_127471211.1 | transcriptional regulator | - |
| EP181_RS08245 () | 1808299..1809240 | + | 942 | WP_127471212.1 | PilZ domain-containing protein | - |
| EP181_RS08250 () | 1809292..1809729 | + | 438 | WP_127471213.1 | DUF4414 domain-containing protein | - |
| EP181_RS08255 () | 1809736..1810746 | - | 1011 | WP_127471214.1 | hypothetical protein | - |
| EP181_RS08260 () | 1810778..1811503 | - | 726 | WP_127471215.1 | dienelactone hydrolase family protein | - |
| EP181_RS08265 () | 1811716..1811913 | + | 198 | WP_127471216.1 | hypothetical protein | - |
| EP181_RS08270 () | 1811910..1813163 | + | 1254 | WP_127471217.1 | diaminopimelate decarboxylase | - |
| EP181_RS08275 () | 1813529..1814683 | - | 1155 | WP_127471218.1 | hypothetical protein | - |
| EP181_RS08280 () | 1814677..1815870 | - | 1194 | WP_127471219.1 | class I SAM-dependent rRNA methyltransferase | - |
| EP181_RS08285 () | 1816024..1816413 | - | 390 | WP_127471220.1 | glycine cleavage system protein GcvH | - |
| EP181_RS08290 () | 1816507..1818375 | - | 1869 | WP_127471221.1 | diguanylate cyclase | - |
| EP181_RS08295 () | 1818946..1819416 | - | 471 | WP_127471222.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| EP181_RS08300 () | 1819452..1819811 | - | 360 | WP_127471223.1 | ribosome silencing factor | - |
| EP181_RS08305 () | 1819899..1820537 | - | 639 | WP_127471224.1 | nicotinate-nucleotide adenylyltransferase | - |
| EP181_RS08310 () | 1820537..1821790 | - | 1254 | WP_127471225.1 | glutamate-5-semialdehyde dehydrogenase | - |
| EP181_RS08315 () | 1821829..1822917 | - | 1089 | WP_127471226.1 | DNA polymerase III subunit delta | - |
| EP181_RS08320 () | 1822914..1823579 | - | 666 | WP_127471227.1 | hypothetical protein | - |
| EP181_RS08325 () | 1823611..1826088 | - | 2478 | WP_127471228.1 | leucine--tRNA ligase | - |
| EP181_RS08330 () | 1826292..1826684 | + | 393 | WP_127471229.1 | hypothetical protein | - |
| EP181_RS08335 () | 1826694..1828109 | - | 1416 | WP_127471877.1 | apolipoprotein N-acyltransferase | - |
| EP181_RS08340 () | 1828306..1829160 | - | 855 | WP_127471230.1 | Magnesium and cobalt efflux protein CorC | VF |
| EP181_RS08345 () | 1829204..1829683 | - | 480 | WP_127471231.1 | rRNA maturation RNase YbeY | - |
| EP181_RS08350 () | 1829756..1830766 | - | 1011 | WP_127471232.1 | PhoH family protein | - |
| EP181_RS08355 () | 1830871..1832310 | - | 1440 | WP_127471233.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| EP181_RS08360 () | 1832464..1834107 | - | 1644 | WP_127471234.1 | O-antigen ligase family protein | - |
| EP181_RS08365 () | 1834177..1834689 | - | 513 | WP_127471235.1 | hypothetical protein | VF |
| EP181_RS08370 () | 1834826..1835929 | - | 1104 | WP_127471236.1 | Globin-coupled histidine kinase | VF |
| EP181_RS08375 () | 1836324..1836587 | - | 264 | WP_127471237.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| EP181_RS08380 () | 1836577..1836834 | - | 258 | WP_127471238.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| EP181_RS08385 () | 1837105..1837737 | - | 633 | WP_127471239.1 | DNA-binding transcriptional regulator NtrC | VF |
| EP181_RS08390 () | 1837737..1839224 | - | 1488 | WP_127471240.1 | hypothetical protein | VF |
| EP181_RS08395 () | 1839221..1840612 | - | 1392 | WP_127471241.1 | hypothetical protein | - |
| EP181_RS08400 () | 1840614..1841495 | - | 882 | WP_127471242.1 | type II secretion system GspH family protein | - |
| EP181_RS08405 () | 1841527..1842528 | - | 1002 | WP_127471243.1 | hypothetical protein | - |
| EP181_RS08410 () | 1842727..1843206 | - | 480 | WP_127471244.1 | hypothetical protein | - |
| EP181_RS08415 () | 1843310..1843903 | - | 594 | WP_127471245.1 | Lipoprotein signal peptidase | VF |
| EP181_RS08420 () | 1843896..1846733 | - | 2838 | WP_127471246.1 | isoleucine--tRNA ligase | - |
| EP181_RS08425 () | 1846730..1847143 | - | 414 | WP_127471247.1 | DUF86 domain-containing protein | - |
| EP181_RS08430 () | 1847306..1847650 | - | 345 | WP_127471248.1 | nucleotidyltransferase domain-containing protein | - |
| EP181_RS08435 () | 1847677..1848618 | - | 942 | WP_127471249.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| EP181_RS08440 () | 1848721..1850250 | - | 1530 | WP_127471250.1 | murein biosynthesis integral membrane protein MurJ | - |
| EP181_RS08445 () | 1850332..1850595 | - | 264 | WP_127471251.1 | 30S ribosomal protein S20 | - |
| EP181_RS08450 () | 1850750..1851607 | - | 858 | WP_127471879.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| EP181_RS08455 () | 1851658..1852263 | - | 606 | WP_127471252.1 | ADP compounds hydrolase NudE | - |
| EP181_RS08460 () | 1852389..1853000 | + | 612 | WP_127471881.1 | HAD-IA family hydrolase | - |
| EP181_RS08465 () | 1853045..1853671 | - | 627 | WP_127471253.1 | thiopurine S-methyltransferase | - |
| EP181_RS08470 () | 1853747..1854361 | + | 615 | WP_127471254.1 | redoxin family protein | - |
| EP181_RS08475 () | 1854494..1854733 | + | 240 | WP_127471255.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| EP181_RS08480 () | 1854730..1854990 | + | 261 | WP_197723365.1 | type II toxin-antitoxin system VapC family toxin | - |
| EP181_RS12055 () | 1854960..1855130 | + | 171 | WP_197723366.1 | hypothetical protein | - |
| EP181_RS08485 () | 1855135..1855905 | + | 771 | WP_127471256.1 | hypothetical protein | - |
| EP181_RS08490 () | 1856134..1858068 | + | 1935 | WP_127471257.1 | ATP-binding cassette domain-containing protein | - |
| EP181_RS08495 () | 1858219..1859351 | + | 1133 | Protein_1673 | ribonucleotide-diphosphate reductase subunit beta | - |
| EP181_RS08500 () | 1859494..1859790 | - | 297 | WP_127471258.1 | BolA family transcriptional regulator | - |
| EP181_RS08505 () | 1859945..1860463 | + | 519 | WP_127471259.1 | DsrE family protein | - |
| EP181_RS08510 () | 1860600..1861427 | - | 828 | WP_127471260.1 | ion transporter | - |
| EP181_RS08515 () | 1861544..1861795 | + | 252 | WP_127471261.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| EP181_RS08520 () | 1861915..1862883 | - | 969 | WP_127471262.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| EP181_RS08525 () | 1863144..1864715 | + | 1572 | WP_127471263.1 | inorganic phosphate transporter | - |
| EP181_RS08530 () | 1864940..1866238 | - | 1299 | WP_127471883.1 | Phosphate regulon sensor protein PhoR | VF |
| EP181_RS08535 () | 1866245..1866943 | - | 699 | WP_127471264.1 | Phosphate regulon transcriptional regulatory protein PhoB | VF |
| EP181_RS08540 () | 1867200..1867913 | - | 714 | WP_127471265.1 | phosphate signaling complex protein PhoU | - |
| EP181_RS08545 () | 1868010..1868828 | - | 819 | WP_127471266.1 | Phosphate import ATP-binding protein PstB | VF |
| EP181_RS08550 () | 1868871..1870523 | - | 1653 | WP_127471267.1 | phosphate ABC transporter permease PstA | - |
| EP181_RS08555 () | 1870535..1872826 | - | 2292 | WP_127471268.1 | ABC transporter permease subunit | - |
| EP181_RS08560 () | 1873162..1874568 | + | 1407 | WP_127471269.1 | type I glutamate--ammonia ligase | - |
| EP181_RS08565 () | 1874714..1877458 | - | 2745 | WP_127471270.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | - |
| EP181_RS08570 () | 1877517..1878302 | - | 786 | WP_127471885.1 | hypothetical protein | - |
| EP181_RS08575 () | 1878545..1878883 | + | 339 | WP_127471271.1 | P-II family nitrogen regulator | - |
| EP181_RS08580 () | 1878898..1880145 | + | 1248 | WP_127471272.1 | ammonium transporter | - |
| EP181_RS08585 () | 1880344..1880805 | + | 462 | WP_127471273.1 | flagellar basal body-associated FliL family protein | - |
| EP181_RS08590 () | 1880878..1881306 | - | 429 | WP_127471274.1 | hypothetical protein | - |
| EP181_RS08595 () | 1881375..1882163 | + | 789 | WP_127471886.1 | Flagellin | VF |
| EP181_RS08600 () | 1882353..1885106 | + | 2754 | Protein_1694 | valine--tRNA ligase | - |
| EP181_RS12060 () | 1885158..1885820 | + | 663 | WP_172959765.1 | TIGR04211 family SH3 domain-containing protein | - |
| EP181_RS08605 () | 1885942..1886667 | - | 726 | WP_127471276.1 | DsbC family protein | - |
| EP181_RS08610 () | 1886809..1887737 | - | 929 | Protein_1697 | Tyrosine recombinase XerD | VF |
| EP181_RS08615 () | 1887830..1888174 | - | 345 | WP_127471277.1 | 50S ribosomal protein L19 | - |
| EP181_RS08620 () | 1888316..1888996 | - | 681 | WP_127471278.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| EP181_RS08625 () | 1888993..1889514 | - | 522 | WP_127471279.1 | ribosome maturation factor RimM | - |
| EP181_RS08630 () | 1889546..1889791 | - | 246 | WP_127471280.1 | 30S ribosomal protein S16 | - |
| EP181_RS08635 () | 1890178..1891581 | - | 1404 | WP_127471281.1 | signal recognition particle protein | - |
| EP181_RS08640 () | 1891862..1892650 | + | 789 | WP_127471282.1 | cytochrome c biogenesis protein CcsA | - |
| EP181_RS08645 () | 1892886..1894127 | + | 1242 | WP_127471283.1 | HlyC/CorC family transporter | - |
| EP181_RS08650 () | 1894130..1894942 | + | 813 | WP_127471284.1 | inositol monophosphatase | - |
| EP181_RS08655 () | 1895023..1897314 | - | 2292 | WP_172959726.1 | Aerobic respiration control sensor protein ArcB | VF |
| EP181_RS08660 () | 1897522..1898799 | - | 1278 | WP_127471286.1 | OmpP1/FadL family transporter | - |
| EP181_RS08665 () | 1898936..1900303 | - | 1368 | WP_127471287.1 | DNA repair protein RadA | - |
| EP181_RS08670 () | 1900436..1901095 | - | 660 | WP_127471288.1 | cytochrome c1 | - |
| EP181_RS08675 () | 1901096..1902340 | - | 1245 | WP_127471289.1 | cytochrome bc complex cytochrome b subunit | - |
| EP181_RS08680 () | 1902340..1902956 | - | 617 | Protein_1711 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
| EP181_RS08685 () | 1903089..1903841 | - | 753 | WP_127471290.1 | Nif3-like dinuclear metal center hexameric protein | - |
| EP181_RS08690 () | 1903986..1905287 | - | 1302 | WP_127471291.1 | histidinol dehydrogenase | - |
| EP181_RS08695 () | 1905280..1905921 | - | 642 | WP_127471292.1 | ATP phosphoribosyltransferase | - |
| EP181_RS08700 () | 1905988..1907247 | - | 1260 | WP_127471293.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| EP181_RS08705 () | 1907335..1907553 | - | 219 | WP_127471294.1 | BolA/IbaG family iron-sulfur metabolism protein | - |
| EP181_RS08710 () | 1907573..1908340 | - | 768 | WP_127471887.1 | ABC transporter permease | - |
| EP181_RS08715 () | 1908340..1909263 | - | 924 | WP_127471888.1 | putative ABC transporter ATP-binding protein YadG | VF |
| EP181_RS08720 () | 1909501..1909791 | - | 291 | WP_127471295.1 | STAS domain-containing protein | - |
| EP181_RS08725 () | 1909788..1910465 | - | 678 | WP_127471296.1 | ABC transporter substrate-binding protein | - |
| EP181_RS08730 () | 1910489..1910956 | - | 468 | WP_127471297.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| EP181_RS08735 () | 1911095..1911879 | - | 785 | Protein_1722 | lipid asymmetry maintenance ABC transporter permease subunit MlaE | - |
| EP181_RS08740 () | 1911872..1912720 | - | 849 | WP_127471298.1 | putative phospholipid import ATP-binding protein MlaF | VF |
| EP181_RS08745 () | 1912832..1913467 | - | 636 | WP_127471299.1 | hypothetical protein | - |
| EP181_RS08750 () | 1913876..1914865 | + | 990 | WP_127471300.1 | calcium/sodium antiporter | - |
| EP181_RS08755 () | 1914880..1915440 | + | 561 | WP_127471301.1 | HAD hydrolase family protein | - |
| EP181_RS08760 () | 1915487..1916062 | + | 576 | WP_127471302.1 | LPS export ABC transporter periplasmic protein LptC | - |
| EP181_RS08765 () | 1916166..1916738 | + | 573 | WP_127471303.1 | lipopolysaccharide transport periplasmic protein LptA | - |
| EP181_RS08770 () | 1916838..1917508 | + | 671 | Protein_1729 | Lipopolysaccharide export system ATP-binding protein LptB | VF |
| EP181_RS08775 () | 1917771..1918106 | + | 336 | WP_127471304.1 | ribosome-associated translation inhibitor RaiA | - |
| EP181_RS08780 () | 1918284..1919642 | + | 1359 | WP_127471305.1 | magnesium transporter | - |
| EP181_RS08785 () | 1919787..1920431 | + | 645 | WP_172959727.1 | putative lipoprotein YiaD | VF |
| EP181_RS08790 () | 1920538..1922691 | - | 2154 | WP_172959728.1 | putative signaling protein | VF |
| EP181_RS08795 () | 1922930..1924513 | - | 1584 | WP_127471308.1 | Peptide chain release factor 3 | VF |
| EP181_RS08800 () | 1924746..1925801 | + | 1056 | WP_127471309.1 | AI-2E family transporter | - |
| EP181_RS08805 () | 1925906..1926940 | - | 1035 | WP_127471310.1 | protein translocase subunit SecF | - |
| EP181_RS08810 () | 1926949..1928835 | - | 1887 | WP_127471311.1 | protein translocase subunit SecD | - |
| EP181_RS08815 () | 1928951..1929279 | - | 329 | Protein_1738 | preprotein translocase subunit YajC | - |
| EP181_RS08820 () | 1929395..1930519 | - | 1125 | WP_127471312.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| EP181_RS08825 () | 1930563..1931620 | - | 1058 | Protein_1740 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| EP181_RS08830 () | 1931757..1933703 | - | 1947 | WP_127471313.1 | GGDEF domain-containing phosphodiesterase | - |
| EP181_RS08845 () | 1934822..1935124 | + | 303 | WP_127471314.1 | AlpA family phage regulatory protein | - |
| EP181_RS08850 () | 1935681..1936028 | - | 348 | WP_127471315.1 | hypothetical protein | - |
| EP181_RS08855 () | 1936160..1936492 | + | 333 | WP_127471316.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|