MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 84743 bp
Accession: NZ_AP018664 Location: 1024373..1109115 Organism: Sphingobium amiense strain DSM 16289 Replicon: chromosome
Accession: NZ_AP018664 Location: 1024373..1109115 Organism: Sphingobium amiense strain DSM 16289 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAMIE_RS04810 () | 1019613..1021463 | - | 1851 | WP_126516745.1 | TonB-dependent siderophore receptor | - |
| SAMIE_RS04815 () | 1021514..1023040 | + | 1527 | WP_066704330.1 | IS21 family transposase | - |
| SAMIE_RS04820 () | 1023030..1023800 | + | 771 | WP_066704332.1 | IS21-like element helper ATPase IstB | - |
| SAMIE_RS04825 () | 1023872..1024141 | - | 270 | WP_126516746.1 | hypothetical protein | - |
| SAMIE_RS04830 () | 1024349..1024552 | - | 204 | WP_126516747.1 | hypothetical protein | - |
| SAMIE_RS04835 () | 1024734..1026788 | - | 2055 | WP_083952587.1 | glycosyltransferase family 9 protein | - |
| SAMIE_RS04840 () | 1026755..1027792 | - | 1038 | WP_066702286.1 | methyltransferase domain-containing protein | - |
| SAMIE_RS04845 () | 1027855..1029033 | - | 1179 | WP_126516748.1 | hypothetical protein | - |
| SAMIE_RS04850 () | 1029243..1030412 | - | 1170 | WP_066702309.1 | hypothetical protein | VF |
| SAMIE_RS04855 () | 1030456..1031211 | - | 756 | WP_066702306.1 | Polysialic acid transport protein KpsM | VF |
| SAMIE_RS04860 () | 1031423..1032118 | - | 696 | WP_066702275.1 | hypothetical protein | - |
| SAMIE_RS04865 () | 1032118..1033611 | - | 1494 | WP_066702274.1 | glycosyltransferase family 2 protein | - |
| SAMIE_RS04870 () | 1033623..1034255 | - | 633 | WP_066702273.1 | HAD family phosphatase | - |
| SAMIE_RS04875 () | 1034263..1034901 | - | 639 | WP_066702269.1 | hypothetical protein | - |
| SAMIE_RS04880 () | 1034935..1036914 | - | 1980 | WP_066702266.1 | hypothetical protein | - |
| SAMIE_RS04885 () | 1036979..1037986 | - | 1008 | WP_066702256.1 | hypothetical protein | VF |
| SAMIE_RS04890 () | 1038239..1038901 | - | 663 | WP_066702254.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| SAMIE_RS04895 () | 1038958..1039788 | - | 831 | WP_066702252.1 | class I SAM-dependent methyltransferase | - |
| SAMIE_RS04900 () | 1039894..1043022 | - | 3129 | WP_162849032.1 | Putative glycosyltransferase EpsE | VF |
| SAMIE_RS04905 () | 1043217..1043771 | - | 555 | WP_066702247.1 | glycosyltransferase family 9 protein | - |
| SAMIE_RS04910 () | 1043768..1045273 | - | 1506 | WP_145988116.1 | glycosyltransferase family 9 protein | - |
| SAMIE_RS04915 () | 1045574..1048042 | + | 2469 | WP_162849033.1 | glycosyltransferase | - |
| SAMIE_RS04920 () | 1048039..1049208 | + | 1170 | WP_066702242.1 | Cellobiose 2-epimerase | VF |
| SAMIE_RS04925 () | 1049210..1050679 | + | 1470 | WP_066702241.1 | Bifunctional protein HldE | VF |
| SAMIE_RS04930 () | 1050709..1051260 | + | 552 | WP_066702240.1 | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase | VF |
| SAMIE_RS04935 () | 1051354..1052106 | + | 753 | WP_162849034.1 | methyltransferase domain-containing protein | - |
| SAMIE_RS04940 () | 1052178..1052966 | + | 789 | WP_066702237.1 | histidinol-phosphatase | - |
| SAMIE_RS04945 () | 1053033..1053899 | - | 867 | WP_066702236.1 | Glucose-1-phosphate thymidylyltransferase 1 | VF |
| SAMIE_RS04950 () | 1053927..1054811 | - | 885 | WP_066702303.1 | dTDP-4-dehydrorhamnose reductase | - |
| SAMIE_RS04955 () | 1054811..1055881 | - | 1071 | WP_066702224.1 | dTDP-glucose 4,6-dehydratase 2 | VF |
| SAMIE_RS04960 () | 1055885..1056505 | - | 621 | WP_126516751.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | VF |
| SAMIE_RS04965 () | 1056648..1057874 | + | 1227 | WP_083952581.1 | D-inositol 3-phosphate glycosyltransferase | VF |
| SAMIE_RS04970 () | 1057917..1058954 | - | 1038 | WP_066702219.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SAMIE_RS04975 () | 1059513..1059929 | - | 417 | Protein_978 | hypothetical protein | - |
| SAMIE_RS04980 () | 1060505..1061083 | + | 579 | WP_083952580.1 | sigma-70 family RNA polymerase sigma factor | - |
| SAMIE_RS04985 () | 1061076..1062068 | + | 993 | WP_066702213.1 | FecR domain-containing protein | - |
| SAMIE_RS04990 () | 1062164..1064728 | + | 2565 | WP_066702211.1 | Colicin I receptor | VF |
| SAMIE_RS04995 () | 1064722..1066839 | + | 2118 | WP_066702208.1 | Atxe2 family lasso peptide isopeptidase | - |
| SAMIE_RS05000 () | 1066836..1068587 | - | 1752 | WP_066702205.1 | asparagine synthase C-terminal domain-containing protein | - |
| SAMIE_RS05005 () | 1068587..1069243 | - | 657 | WP_025549571.1 | lasso peptide biosynthesis B2 protein | - |
| SAMIE_RS05010 () | 1069296..1069415 | - | 120 | WP_126516753.1 | benenodin family lasso peptide | - |
| SAMIE_RS05015 () | 1069581..1070132 | - | 552 | WP_066702202.1 | GntR family transcriptional regulator | - |
| SAMIE_RS05020 () | 1070193..1071101 | - | 909 | WP_083952577.1 | phytanoyl-CoA dioxygenase family protein | - |
| SAMIE_RS05025 () | 1071076..1071675 | - | 600 | WP_066702196.1 | autoinducer synthase | - |
| SAMIE_RS05030 () | 1071732..1072478 | - | 747 | WP_066702300.1 | HTH-type quorum sensing-dependent transcriptional regulator RpaR | VF |
| SAMIE_RS05035 () | 1072872..1073525 | + | 654 | WP_162849035.1 | DUF2285 domain-containing protein | - |
| SAMIE_RS05040 () | 1073992..1074845 | + | 854 | Protein_991 | DUF1738 domain-containing protein | - |
| SAMIE_RS05045 () | 1074999..1076390 | + | 1392 | WP_030538911.1 | IS91 family transposase ISAzo26 | Transposase |
| SAMIE_RS05050 () | 1076387..1078174 | + | 1788 | WP_030538912.1 | hypothetical protein | - |
| SAMIE_RS05055 () | 1078171..1080396 | + | 2226 | WP_030538913.1 | integrase | - |
| SAMIE_RS05060 () | 1080441..1081343 | + | 903 | WP_030538914.1 | DUF1738 domain-containing protein | - |
| SAMIE_RS05065 () | 1081340..1081654 | + | 315 | WP_126516754.1 | antirestriction protein ArdC | - |
| SAMIE_RS05070 () | 1081651..1082052 | + | 402 | WP_066699794.1 | DUF2958 domain-containing protein | - |
| SAMIE_RS05075 () | 1082169..1084043 | + | 1875 | WP_066699793.1 | ParB N-terminal domain-containing protein | - |
| SAMIE_RS05080 () | 1084225..1084425 | + | 201 | WP_126516755.1 | hypothetical protein | - |
| SAMIE_RS05085 () | 1084550..1084792 | + | 243 | WP_066699767.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| SAMIE_RS05090 () | 1084792..1085127 | + | 336 | WP_066699765.1 | endoribonuclease MazF | Toxin Detail |
| SAMIE_RS05095 () | 1085967..1086287 | + | 321 | WP_066699763.1 | DUF736 domain-containing protein | - |
| SAMIE_RS05100 () | 1086464..1086721 | + | 258 | WP_066699761.1 | helix-turn-helix domain-containing protein | - |
| SAMIE_RS05105 () | 1086718..1087290 | + | 573 | WP_066699759.1 | S26 family signal peptidase | - |
| SAMIE_RS05110 () | 1087278..1087928 | + | 651 | WP_066699757.1 | lytic transglycosylase domain-containing protein | - |
| SAMIE_RS05115 () | 1088046..1088711 | + | 666 | WP_066699752.1 | Pentapeptide repeat protein MfpA | VF |
| SAMIE_RS23290 () | 1088822..1089160 | - | 339 | WP_066699751.1 | hypothetical protein | - |
| SAMIE_RS05120 () | 1089510..1091522 | + | 2013 | WP_066699750.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| SAMIE_RS05125 () | 1091708..1091927 | - | 220 | Protein_1009 | CopG family transcriptional regulator | - |
| SAMIE_RS05130 () | 1092070..1093029 | + | 960 | WP_083952441.1 | HEPN domain-containing protein | - |
| SAMIE_RS05135 () | 1093175..1095196 | + | 2022 | WP_066699746.1 | Conjugal transfer protein TraG | VF |
| SAMIE_RS05140 () | 1095193..1095609 | + | 417 | WP_066699744.1 | IS3 family transposase ISVa4 | Transposase |
| SAMIE_RS05145 () | 1095672..1096628 | + | 957 | WP_066699792.1 | Type IV secretion system protein VirB11 | VF |
| SAMIE_RS05150 () | 1096625..1096972 | + | 348 | WP_197724666.1 | TrbC/VirB2 family protein | - |
| SAMIE_RS05155 () | 1096969..1097229 | + | 261 | WP_066699742.1 | VirB3 family type IV secretion system protein | - |
| SAMIE_RS05160 () | 1097223..1099673 | + | 2451 | WP_066699740.1 | conjugal transfer protein TrbE | - |
| SAMIE_RS05165 () | 1099675..1100424 | + | 750 | WP_066699738.1 | P-type conjugative transfer protein TrbJ | - |
| SAMIE_RS05170 () | 1100551..1101846 | + | 1296 | WP_066699736.1 | P-type conjugative transfer protein TrbL | - |
| SAMIE_RS05175 () | 1101848..1102624 | + | 777 | WP_066699734.1 | conjugal transfer protein TrbF | - |
| SAMIE_RS05180 () | 1102621..1103478 | + | 858 | WP_066699732.1 | P-type conjugative transfer protein TrbG | - |
| SAMIE_RS05185 () | 1103475..1104737 | + | 1263 | WP_066699730.1 | Type IV secretion system protein PtlG | VF |
| SAMIE_RS05190 () | 1104747..1104971 | + | 225 | WP_066699728.1 | DUF2274 domain-containing protein | - |
| SAMIE_RS05195 () | 1105379..1105741 | + | 363 | WP_066699726.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SAMIE_RS05200 () | 1105738..1106061 | + | 324 | WP_066699724.1 | XRE family transcriptional regulator | - |
| SAMIE_RS05205 () | 1106071..1106220 | - | 150 | Protein_1025 | integrase | - |
| SAMIE_RS05210 () | 1106276..1106647 | - | 372 | WP_066699721.1 | CopG family transcriptional regulator | - |
| SAMIE_RS05215 () | 1106714..1107028 | + | 315 | WP_066699720.1 | hypothetical protein | - |
| SAMIE_RS05220 () | 1107122..1107463 | + | 342 | WP_066699717.1 | hypothetical protein | - |
| SAMIE_RS05225 () | 1107561..1108598 | - | 1038 | WP_066699716.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SAMIE_RS05235 () | 1109275..1110606 | + | 1332 | WP_066699715.1 | dicarboxylate/amino acid:cation symporter | - |
| SAMIE_RS05240 () | 1110611..1110988 | - | 378 | WP_066699713.1 | response regulator | - |
| SAMIE_RS05245 () | 1111103..1112017 | + | 915 | WP_066699711.1 | N-formylglutamate amidohydrolase | - |
| SAMIE_RS05250 () | 1112029..1113909 | - | 1881 | WP_174522213.1 | acyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|