MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 123278 bp
Accession: NZ_AP017898 Location: 2220681..2343958 Organism: Sphingopyxis sp. FD7 Replicon: chromosome
Accession: NZ_AP017898 Location: 2220681..2343958 Organism: Sphingopyxis sp. FD7 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPYCA_RS10475 () | 2216251..2218071 | + | 1821 | WP_120220224.1 | DUF885 domain-containing protein | - |
| SPYCA_RS10480 () | 2218172..2219059 | + | 888 | WP_120220227.1 | helix-turn-helix domain-containing protein | - |
| SPYCA_RS10485 () | 2219364..2219771 | + | 408 | Protein_2065 | SUF system Fe-S cluster assembly regulator | - |
| SPYCA_RS10490 () | 2219884..2221347 | + | 1464 | WP_172595153.1 | Fe-S cluster assembly protein SufB | - |
| SPYCA_RS10495 () | 2221456..2221734 | + | 279 | WP_146625121.1 | hypothetical protein | - |
| SPYCA_RS10500 () | 2221737..2222570 | + | 834 | WP_120220233.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| SPYCA_RS10505 () | 2222692..2223420 | + | 729 | WP_120220235.1 | SufD family Fe-S cluster assembly protein | - |
| SPYCA_RS10510 () | 2223417..2224598 | + | 1182 | WP_120220237.1 | cysteine desulfurase | - |
| SPYCA_RS10515 () | 2224595..2225065 | + | 471 | WP_120220239.1 | SUF system Fe-S cluster assembly protein | - |
| SPYCA_RS10520 () | 2225181..2225540 | + | 360 | WP_120220241.1 | iron-sulfur cluster assembly accessory protein | - |
| SPYCA_RS10525 () | 2225541..2226266 | - | 726 | WP_120220243.1 | extensin family protein | - |
| SPYCA_RS10530 () | 2226322..2227731 | - | 1410 | WP_172595036.1 | cytochrome P450 | - |
| SPYCA_RS10535 () | 2227891..2228712 | + | 822 | WP_120220245.1 | hypothetical protein | - |
| SPYCA_RS10540 () | 2228722..2230047 | - | 1326 | WP_172595037.1 | dicarboxylate/amino acid:cation symporter | - |
| SPYCA_RS10545 () | 2230123..2231913 | - | 1791 | WP_120220247.1 | SLC13 family permease | - |
| SPYCA_RS10550 () | 2232065..2233141 | - | 1077 | WP_120220249.1 | chorismate synthase | - |
| SPYCA_RS10555 () | 2233148..2233678 | - | 531 | WP_172595038.1 | GNAT family N-acetyltransferase | - |
| SPYCA_RS10560 () | 2233671..2234498 | - | 828 | WP_120220253.1 | hypothetical protein | VF |
| SPYCA_RS10565 () | 2234516..2235583 | - | 1068 | WP_120220255.1 | YihY/virulence factor BrkB family protein | - |
| SPYCA_RS10570 () | 2235587..2236504 | - | 918 | WP_120220257.1 | DnaJ domain-containing protein | - |
| SPYCA_RS10575 () | 2236678..2237268 | + | 591 | WP_120220259.1 | Pyridoxine/pyridoxamine 5'-phosphate oxidase | VF |
| SPYCA_RS10580 () | 2237265..2238086 | + | 822 | WP_120220261.1 | hypothetical protein | VF |
| SPYCA_RS10585 () | 2238272..2239423 | - | 1152 | WP_120220263.1 | serine hydrolase | - |
| SPYCA_RS10590 () | 2239428..2239850 | + | 423 | WP_172595039.1 | hypothetical protein | - |
| SPYCA_RS10595 () | 2239892..2240680 | - | 789 | WP_172595040.1 | AraC family transcriptional regulator | - |
| SPYCA_RS10600 () | 2240895..2241818 | - | 924 | WP_120222277.1 | alpha/beta hydrolase | - |
| SPYCA_RS10605 () | 2241962..2242846 | - | 885 | WP_120220267.1 | pirin family protein | - |
| SPYCA_RS10610 () | 2242870..2243238 | - | 369 | WP_120220269.1 | DUF2200 domain-containing protein | - |
| SPYCA_RS10615 () | 2243247..2243537 | - | 291 | WP_120220271.1 | BolA family transcriptional regulator | - |
| SPYCA_RS10620 () | 2243651..2244181 | + | 531 | WP_172595154.1 | Chaperone protein DnaJ | VF |
| SPYCA_RS10625 () | 2244192..2244629 | + | 438 | WP_120220275.1 | nuclear transport factor 2 family protein | - |
| SPYCA_RS10630 () | 2244698..2245687 | + | 990 | WP_120220277.1 | cobaltochelatase subunit CobS | - |
| SPYCA_RS10635 () | 2245684..2246883 | + | 1200 | WP_120220279.1 | alpha/beta hydrolase | - |
| SPYCA_RS10640 () | 2247016..2248233 | - | 1218 | WP_120220282.1 | MFS transporter | - |
| SPYCA_RS10645 () | 2248425..2250248 | + | 1824 | WP_120220284.1 | cobaltochelatase subunit CobT | - |
| SPYCA_RS10650 () | 2250478..2251158 | + | 681 | WP_146625122.1 | hypothetical protein | - |
| SPYCA_RS10655 () | 2251271..2251513 | + | 243 | WP_120220288.1 | BrnT family toxin | Toxin Detail |
| SPYCA_RS10660 () | 2251552..2251803 | + | 252 | WP_120222278.1 | BrnA antitoxin family protein | Antitoxin Detail |
| SPYCA_RS10665 () | 2252348..2253994 | + | 1647 | WP_120220290.1 | acetolactate synthase large subunit | - |
| SPYCA_RS10670 () | 2254106..2255539 | + | 1434 | WP_172595041.1 | aldehyde dehydrogenase family protein | - |
| SPYCA_RS10675 () | 2255767..2256639 | + | 873 | WP_120220292.1 | UDP-2,3-diacylglucosamine diphosphatase | - |
| SPYCA_RS10680 () | 2256636..2257688 | + | 1053 | WP_120220294.1 | glycosyltransferase family 1 protein | - |
| SPYCA_RS10685 () | 2257685..2260084 | - | 2400 | WP_120220296.1 | TonB-dependent receptor plug domain-containing protein | - |
| SPYCA_RS10690 () | 2260280..2261866 | + | 1587 | WP_120220298.1 | glutamine-hydrolyzing GMP synthase | - |
| SPYCA_RS10695 () | 2262160..2263416 | + | 1257 | WP_120220300.1 | hypothetical protein ; Integrase | Integrase |
| SPYCA_RS10700 () | 2263406..2263666 | - | 261 | WP_120220302.1 | AlpA family phage regulatory protein | - |
| SPYCA_RS10705 () | 2263698..2263916 | - | 219 | WP_058807805.1 | DUF2274 domain-containing protein | - |
| SPYCA_RS10710 () | 2263913..2265019 | - | 1107 | WP_120220304.1 | hypothetical protein | VF |
| SPYCA_RS10720 () | 2265159..2266522 | + | 1364 | WP_120219001.1 | IS3 family transposase ISPko4 | Transposase |
| SPYCA_RS10725 () | 2266939..2267133 | + | 195 | WP_120222280.1 | hypothetical protein | - |
| SPYCA_RS10730 () | 2267229..2267714 | + | 486 | WP_197715339.1 | hypothetical protein | - |
| SPYCA_RS10735 () | 2267654..2268004 | + | 351 | WP_003051010.1 | IS3 family transposase ISCpr2 | Transposase |
| SPYCA_RS10740 () | 2267977..2268801 | + | 825 | WP_120220306.1 | IS3 family transposase ISMco1 | Transposase |
| SPYCA_RS10745 () | 2268980..2269708 | - | 729 | WP_120222281.1 | IS21 family transposase ISSsp4 | Transposase |
| SPYCA_RS10750 () | 2269695..2271209 | - | 1515 | WP_021238707.1 | IS21 family transposase ISSsp4 | Transposase |
| SPYCA_RS10755 () | 2271325..2272149 | - | 825 | WP_120220306.1 | IS3 family transposase ISMco1 | Transposase |
| SPYCA_RS10760 () | 2272122..2272472 | - | 351 | WP_003051010.1 | transposase | - |
| SPYCA_RS10765 () | 2272452..2273156 | + | 705 | WP_120220308.1 | bacteriophage abortive infection AbiH family protein | - |
| SPYCA_RS10770 () | 2273219..2274109 | - | 891 | WP_137866785.1 | hypothetical protein | - |
| SPYCA_RS10775 () | 2274231..2275181 | + | 951 | WP_120220313.1 | DUF4238 domain-containing protein | - |
| SPYCA_RS10780 () | 2275214..2276437 | - | 1224 | WP_137866784.1 | hypothetical protein | - |
| SPYCA_RS19045 () | 2276623..2277759 | + | 1137 | WP_146625123.1 | hypothetical protein | - |
| SPYCA_RS10795 () | 2277822..2278993 | + | 1172 | WP_120219141.1 | IS3 family transposase ISMch1 | Transposase |
| SPYCA_RS19050 () | 2279127..2279606 | + | 480 | WP_146625124.1 | hypothetical protein | - |
| SPYCA_RS10800 () | 2279738..2280145 | - | 408 | WP_120220321.1 | CopG family transcriptional regulator | - |
| SPYCA_RS10805 () | 2280142..2282130 | - | 1989 | WP_120220323.1 | hypothetical protein | VF |
| SPYCA_RS10810 () | 2282346..2282543 | + | 198 | WP_172595042.1 | hypothetical protein | - |
| SPYCA_RS10815 () | 2282543..2282833 | + | 291 | WP_120220327.1 | hypothetical protein | - |
| SPYCA_RS10820 () | 2282826..2284565 | - | 1740 | WP_120220329.1 | VirD2 family relaxase/mobilization nuclease | - |
| SPYCA_RS10825 () | 2284813..2285514 | - | 702 | WP_120220331.1 | lytic transglycosylase domain-containing protein | - |
| SPYCA_RS10830 () | 2285518..2285847 | - | 330 | WP_120220333.1 | DUF736 domain-containing protein | - |
| SPYCA_RS10835 () | 2285851..2286429 | - | 579 | WP_120220335.1 | S26 family signal peptidase | - |
| SPYCA_RS10840 () | 2286426..2286866 | - | 441 | WP_120222282.1 | DUF2840 domain-containing protein | - |
| SPYCA_RS10845 () | 2287112..2288005 | - | 894 | WP_120220337.1 | replication initiator protein A | - |
| SPYCA_RS10850 () | 2288014..2288286 | - | 273 | WP_066479195.1 | helix-turn-helix domain-containing protein | - |
| SPYCA_RS10855 () | 2288418..2288972 | - | 555 | WP_172595043.1 | DUF2285 domain-containing protein | - |
| SPYCA_RS10860 () | 2289124..2290203 | - | 1080 | WP_120220341.1 | IS5 family transposase ISMex35 | Transposase |
| SPYCA_RS10870 () | 2290652..2290918 | - | 267 | WP_120220343.1 | DUF2285 domain-containing protein | - |
| SPYCA_RS10875 () | 2291137..2291364 | + | 228 | WP_120220345.1 | helix-turn-helix transcriptional regulator | - |
| SPYCA_RS10880 () | 2291414..2291734 | - | 321 | WP_100868183.1 | DUF736 domain-containing protein | - |
| SPYCA_RS10885 () | 2292347..2292751 | - | 405 | WP_120220347.1 | hypothetical protein | - |
| SPYCA_RS19270 () | 2292895..2293059 | - | 165 | WP_172595044.1 | hypothetical protein | - |
| SPYCA_RS19055 () | 2293369..2293749 | - | 381 | WP_146625125.1 | hypothetical protein | - |
| SPYCA_RS10900 () | 2295265..2296314 | - | 1050 | WP_120220349.1 | toprim domain-containing protein | - |
| SPYCA_RS10905 () | 2296316..2300656 | - | 4341 | WP_120220351.1 | strawberry notch family protein | - |
| SPYCA_RS10910 () | 2300702..2300917 | - | 216 | WP_120220353.1 | hypothetical protein | - |
| SPYCA_RS10915 () | 2300904..2301422 | - | 519 | WP_120220355.1 | hypothetical protein | - |
| SPYCA_RS10920 () | 2301491..2303587 | - | 2097 | WP_120220357.1 | ParB N-terminal domain-containing protein | - |
| SPYCA_RS10925 () | 2303715..2304908 | - | 1194 | WP_120220359.1 | DUF932 domain-containing protein | - |
| SPYCA_RS10930 () | 2305378..2306637 | + | 1260 | WP_197715340.1 | hypothetical protein | VF |
| SPYCA_RS10935 () | 2306634..2307980 | + | 1347 | WP_120220363.1 | hypothetical protein | - |
| SPYCA_RS10940 () | 2307989..2310358 | + | 2370 | WP_120220366.1 | hypothetical protein | - |
| SPYCA_RS10945 () | 2310361..2310834 | + | 474 | WP_146625126.1 | hypothetical protein | - |
| SPYCA_RS10955 () | 2312183..2313031 | + | 849 | WP_146625127.1 | hypothetical protein | - |
| SPYCA_RS10960 () | 2313018..2314280 | + | 1263 | WP_120220372.1 | hypothetical protein | - |
| SPYCA_RS10965 () | 2314583..2315005 | + | 423 | WP_120220374.1 | hypothetical protein | - |
| SPYCA_RS10970 () | 2315060..2315350 | + | 291 | WP_197715341.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| SPYCA_RS10975 () | 2315363..2315734 | + | 372 | WP_120220376.1 | type II toxin-antitoxin system VapC family toxin | - |
| SPYCA_RS10980 () | 2315761..2316123 | - | 363 | WP_120222284.1 | helix-turn-helix transcriptional regulator | - |
| SPYCA_RS10985 () | 2316233..2316937 | + | 705 | WP_120220378.1 | glutathione S-transferase family protein | - |
| SPYCA_RS10990 () | 2316991..2317476 | + | 486 | WP_120220380.1 | GFA family protein | - |
| SPYCA_RS10995 () | 2317610..2319166 | - | 1557 | WP_172595155.1 | Ferredoxin--NADP reductase | VF |
| SPYCA_RS11000 () | 2319296..2319859 | - | 564 | WP_120220384.1 | peroxiredoxin | - |
| SPYCA_RS11005 () | 2320072..2320365 | - | 294 | WP_146625128.1 | hypothetical protein | - |
| SPYCA_RS11010 () | 2320511..2321689 | + | 1179 | WP_120220388.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| SPYCA_RS11015 () | 2321686..2322150 | + | 465 | WP_120220390.1 | Acetyltransferase YpeA | ARG |
| SPYCA_RS11020 () | 2322209..2325019 | + | 2811 | WP_120220392.1 | DNA polymerase I | - |
| SPYCA_RS11025 () | 2325016..2325507 | + | 492 | WP_120220394.1 | hypothetical protein | - |
| SPYCA_RS11030 () | 2325627..2326301 | + | 675 | WP_120220396.1 | CDP-alcohol phosphatidyltransferase family protein | - |
| SPYCA_RS11035 () | 2326307..2327200 | - | 894 | WP_120222285.1 | prephenate dehydratase | - |
| SPYCA_RS11040 () | 2327382..2328017 | + | 636 | WP_120220398.1 | cytochrome c family protein | - |
| SPYCA_RS11045 () | 2328017..2328448 | + | 432 | WP_120220400.1 | cytochrome c family protein | - |
| SPYCA_RS11050 () | 2328496..2329371 | - | 876 | WP_120220402.1 | LOG family protein | - |
| SPYCA_RS11055 () | 2329471..2329959 | - | 489 | WP_197715342.1 | asparaginase | - |
| SPYCA_RS11060 () | 2329950..2330435 | - | 486 | WP_120220404.1 | DUF3291 domain-containing protein | - |
| SPYCA_RS11065 () | 2330446..2332047 | - | 1602 | WP_120222287.1 | lysine--tRNA ligase | - |
| SPYCA_RS11070 () | 2332155..2332523 | + | 369 | WP_120220406.1 | PilZ domain-containing protein | - |
| SPYCA_RS11075 () | 2332659..2334131 | - | 1473 | WP_120220408.1 | ATP-binding protein | - |
| SPYCA_RS11080 () | 2334242..2334502 | + | 261 | WP_120222288.1 | hypothetical protein | - |
| SPYCA_RS11085 () | 2334512..2335333 | - | 822 | WP_120220410.1 | hypothetical protein | - |
| SPYCA_RS11090 () | 2335467..2335949 | - | 483 | WP_120220412.1 | SRPBCC family protein | - |
| SPYCA_RS11095 () | 2335999..2336334 | + | 336 | WP_120222289.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| SPYCA_RS11100 () | 2336524..2338362 | - | 1839 | WP_120220414.1 | M2 family metallopeptidase | - |
| SPYCA_RS11105 () | 2338595..2339359 | - | 765 | WP_120220416.1 | alpha/beta hydrolase | - |
| SPYCA_RS11115 () | 2340072..2340719 | - | 648 | WP_120222290.1 | 2-hydroxychromene-2-carboxylate isomerase | - |
| SPYCA_RS11120 () | 2340846..2341292 | + | 447 | WP_120220420.1 | MarR family transcriptional regulator | - |
| SPYCA_RS11125 () | 2341292..2342374 | + | 1083 | WP_120220422.1 | p-hydroxybenzoic acid efflux pump subunit AaeA | VF |
| SPYCA_RS11130 () | 2342511..2344100 | + | 1590 | WP_120220424.1 | multidrug efflux MFS transporter | - |
| SPYCA_RS11135 () | 2344258..2345148 | - | 891 | WP_120220426.1 | metal-dependent hydrolase | - |
| SPYCA_RS11140 () | 2345208..2345816 | + | 609 | WP_120220432.1 | TetR family transcriptional regulator | - |
| SPYCA_RS11150 () | 2346111..2346761 | - | 651 | WP_120220434.1 | glutathione S-transferase family protein | - |
| SPYCA_RS11155 () | 2346930..2348591 | + | 1662 | WP_120222291.1 | CHASE domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|