MGE detailed information
MGE type: Mobilizable plasmid MGE length: 108910 bp
Accession: NZ_AP017658 Location: 1..108910 Organism: Sphingobium cloacae strain JCM 10874 Replicon: plasmid pSCLO_4
Accession: NZ_AP017658 Location: 1..108910 Organism: Sphingobium cloacae strain JCM 10874 Replicon: plasmid pSCLO_4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SCLO_RS21370 () | 1..1203 | + | 1203 | WP_007688084.1 | Chromosome-partitioning ATPase Soj | VF |
| SCLO_RS21375 () | 1251..2264 | + | 1014 | WP_013849890.1 | ParB/RepB/Spo0J family partition protein | - |
| SCLO_RS21380 () | 2329..2679 | + | 351 | WP_007688086.1 | hypothetical protein | - |
| SCLO_RS21385 () | 2724..3407 | - | 684 | WP_013041559.1 | RES family NAD+ phosphorylase | - |
| SCLO_RS21390 () | 3407..3805 | - | 399 | WP_007686501.1 | MbcA/ParS/Xre antitoxin family protein | - |
| SCLO_RS21395 () | 3902..5068 | - | 1167 | WP_007686500.1 | hypothetical protein | - |
| SCLO_RS21400 () | 5281..6045 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| SCLO_RS21410 () | 6103..6615 | + | 513 | Protein_7 | hypothetical protein | - |
| SCLO_RS21415 () | 6676..7568 | + | 893 | Protein_8 | Protein VirD4 | VF |
| SCLO_RS21420 () | 8140..9093 | - | 954 | WP_061939919.1 | replication initiator protein A | - |
| SCLO_RS21425 () | 9090..9413 | - | 324 | WP_061939951.1 | hypothetical protein | - |
| SCLO_RS21430 () | 9413..10066 | - | 654 | WP_061939917.1 | ParA family protein | - |
| SCLO_RS21435 () | 10139..10771 | - | 633 | WP_066522052.1 | SprT-like domain-containing protein | - |
| SCLO_RS21440 () | 11175..14102 | - | 2928 | WP_174521995.1 | Tn3 family transposase TnpA_ISAzs17 | Transposase |
| SCLO_RS21445 () | 14271..14864 | + | 594 | WP_066522055.1 | Tn3 family transposase ISPsy42 | Transposase |
| SCLO_RS21450 () | 14900..15517 | + | 618 | Protein_15 | type IV secretion system protein | - |
| SCLO_RS21460 () | 15854..16552 | + | 699 | WP_007683408.1 | Type IV secretion system protein virB8 | VF |
| SCLO_RS21465 () | 16549..17310 | + | 762 | Protein_17 | Type IV secretion system protein virB9 | VF |
| SCLO_RS21470 () | 17367..18131 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| SCLO_RS21475 () | 18194..18625 | + | 432 | Protein_19 | IS110 family transposase ISMno14 | Transposase |
| SCLO_RS21480 () | 18949..19074 | - | 126 | Protein_20 | IS3 family transposase | - |
| SCLO_RS21485 () | 19091..19492 | - | 402 | Protein_21 | IS110 family transposase ISMch6 | Transposase |
| SCLO_RS21490 () | 19914..21446 | + | 1533 | WP_096362260.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| SCLO_RS21495 () | 21983..23578 | + | 1596 | WP_096362261.1 | FAD-dependent monooxygenase | - |
| SCLO_RS21500 () | 23955..24215 | + | 261 | Protein_24 | IS3 family transposase ISCc3 | Transposase |
| SCLO_RS21505 () | 24297..24716 | + | 420 | WP_082734689.1 | IS66 family transposase ISAzca2 | Transposase |
| SCLO_RS21510 () | 24713..25084 | + | 372 | WP_062346440.1 | IS66 family transposase ISMno13 | Transposase |
| SCLO_RS21515 () | 25379..26872 | + | 1494 | WP_066522435.1 | IS66 family transposase ISFpe1 | Transposase |
| SCLO_RS21520 () | 26920..27120 | + | 201 | Protein_28 | IS3 family transposase ISPko4 | Transposase |
| SCLO_RS21525 () | 27201..27620 | + | 420 | WP_082734689.1 | IS66 family transposase ISAzca2 | Transposase |
| SCLO_RS21530 () | 27617..27988 | + | 372 | WP_062346440.1 | IS66 family transposase ISMno13 | Transposase |
| SCLO_RS21535 () | 28283..29776 | + | 1494 | WP_066522435.1 | IS66 family transposase ISFpe1 | Transposase |
| SCLO_RS21540 () | 29825..30044 | + | 220 | Protein_32 | DDE-type integrase/transposase/recombinase | - |
| SCLO_RS23105 () | 30100..30336 | - | 237 | Protein_33 | hypothetical protein | - |
| SCLO_RS21545 () | 30458..33367 | + | 2910 | WP_006961814.1 | Tn3 family transposase TnpA_ISYps3 | Transposase |
| SCLO_RS21550 () | 33510..34376 | + | 867 | WP_006961816.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| SCLO_RS21555 () | 34438..34632 | - | 195 | Protein_36 | replication initiation protein | - |
| SCLO_RS21560 () | 35636..35842 | + | 207 | Protein_37 | GrpB family protein | - |
| SCLO_RS21565 () | 35848..36549 | - | 702 | Protein_38 | Conjugal transfer protein TraG | VF |
| SCLO_RS21570 () | 36586..37146 | - | 561 | WP_011950653.1 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| SCLO_RS21575 () | 37214..37978 | + | 765 | WP_066522521.1 | IS6 family transposase IS6100 | Transposase |
| SCLO_RS21580 () | 38167..39159 | - | 993 | WP_123905556.1 | serine/threonine protein phosphatase | - |
| SCLO_RS21585 () | 39455..40219 | + | 765 | WP_066522521.1 | IS6 family transposase IS6100 | Transposase |
| SCLO_RS21590 () | 40277..42709 | + | 2433 | Protein_43 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| SCLO_RS21595 () | 42706..42972 | - | 267 | WP_083949265.1 | XRE family transcriptional regulator | - |
| SCLO_RS21600 () | 43020..43313 | - | 294 | WP_066522399.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SCLO_RS21605 () | 43301..43579 | - | 279 | WP_066522401.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| SCLO_RS21610 () | 43744..46635 | - | 2892 | WP_016746447.1 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| SCLO_RS21615 () | 46761..47381 | + | 621 | WP_008832583.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| SCLO_RS21620 () | 47378..47908 | + | 531 | WP_007686150.1 | GNAT family N-acetyltransferase | - |
| SCLO_RS21625 () | 48158..48490 | - | 333 | Protein_50 | error-prone DNA polymerase | - |
| SCLO_RS23520 () | 48456..48899 | + | 444 | WP_061939936.1 | hypothetical protein | - |
| SCLO_RS21635 () | 49113..49526 | + | 414 | Protein_52 | hypothetical protein | - |
| SCLO_RS21640 () | 49700..49978 | + | 279 | WP_061939934.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SCLO_RS21645 () | 49989..50273 | + | 285 | WP_061939959.1 | HigA family addiction module antidote protein | - |
| SCLO_RS21650 () | 50585..51958 | - | 1374 | WP_061939932.1 | hypothetical protein | - |
| SCLO_RS21655 () | 51959..52528 | - | 570 | WP_061939957.1 | Tn3 family transposase TnpR_ISMex38 | Transposase |
| SCLO_RS21660 () | 52669..55638 | + | 2970 | WP_048575129.1 | Tn3 family transposase TnpA_ISAli20 | Transposase |
| SCLO_RS21665 () | 55864..58779 | - | 2916 | WP_061939930.1 | Mobilization protein A | Relaxase |
| SCLO_RS21670 () | 58949..59272 | + | 324 | WP_061939928.1 | conjugal transfer protein TraD | - |
| SCLO_RS21675 () | 59292..59534 | + | 243 | WP_061939955.1 | conjugal transfer protein TraD | - |
| SCLO_RS21680 () | 59515..59799 | + | 285 | WP_061939926.1 | hypothetical protein | - |
| SCLO_RS21685 () | 59799..60479 | + | 681 | Protein_62 | Conjugal transfer protein TraG | VF |
| SCLO_RS21690 () | 60507..63440 | - | 2934 | WP_061939953.1 | Tn3 family transposase TnpA_ISAzs29 | Transposase |
| SCLO_RS21695 () | 63587..64192 | + | 606 | WP_061939924.1 | Tn3 family transposase ISPsy42 | Transposase |
| SCLO_RS21700 () | 64189..65550 | + | 1362 | WP_061939921.1 | hypothetical protein | - |
| SCLO_RS21705 () | 65606..65825 | - | 220 | Protein_66 | DDE-type integrase/transposase/recombinase | - |
| SCLO_RS21710 () | 65874..67367 | - | 1494 | WP_066522435.1 | IS66 family transposase ISFpe1 | Transposase |
| SCLO_RS21715 () | 67662..68033 | - | 372 | WP_062346440.1 | IS66 family transposase ISMno13 | Transposase |
| SCLO_RS21720 () | 68030..68449 | - | 420 | WP_082734689.1 | IS66 family transposase ISAzca2 | Transposase |
| SCLO_RS21725 () | 68530..68949 | - | 420 | Protein_70 | IS3 family transposase ISCc3 | Transposase |
| SCLO_RS21730 () | 69482..70246 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| SCLO_RS21735 () | 70303..71334 | + | 1032 | Protein_72 | class I SAM-dependent DNA methyltransferase | - |
| SCLO_RS21740 () | 71426..72679 | + | 1254 | WP_007683419.1 | DNA repair exonuclease | - |
| SCLO_RS21745 () | 72682..76122 | + | 3441 | WP_056383892.1 | YhaN family protein | - |
| SCLO_RS21750 () | 76282..78347 | + | 2066 | Protein_75 | ATP-dependent endonuclease | - |
| SCLO_RS21755 () | 78340..80112 | + | 1773 | WP_014072624.1 | ATP-dependent helicase | - |
| SCLO_RS23525 () | 80237..80395 | + | 159 | WP_007683426.1 | hypothetical protein | - |
| SCLO_RS21760 () | 80444..80647 | - | 204 | WP_007683427.1 | hypothetical protein | - |
| SCLO_RS21765 () | 80911..81960 | - | 1050 | WP_007688041.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| SCLO_RS21770 () | 81953..82561 | - | 609 | WP_007688042.1 | hypothetical protein | - |
| SCLO_RS21775 () | 82730..83851 | - | 1122 | WP_007688043.1 | T-DNA border endonuclease VirD2 | Relaxase |
| SCLO_RS21780 () | 83844..84404 | - | 561 | WP_007688044.1 | hypothetical protein | Relaxase |
| SCLO_RS21785 () | 84857..86119 | + | 1263 | WP_096362064.1 | IS21 family transposase ISMex13 | Transposase |
| SCLO_RS21790 () | 86116..86976 | + | 861 | WP_066522470.1 | IS21 family transposase ISMex13 | Transposase |
| SCLO_RS21795 () | 87003..87911 | - | 909 | WP_096362263.1 | ParB/RepB/Spo0J family partition protein | - |
| SCLO_RS21800 () | 87911..88675 | - | 765 | WP_007688046.1 | ParA family protein | - |
| SCLO_RS23530 () | 88688..88864 | - | 177 | WP_007688055.1 | hypothetical protein | - |
| SCLO_RS21805 () | 89056..89448 | - | 393 | WP_007688057.1 | DUF3768 domain-containing protein | - |
| SCLO_RS23620 () | 89708..90058 | + | 351 | WP_066564291.1 | hypothetical protein | - |
| SCLO_RS21815 () | 90197..90718 | - | 522 | WP_031295760.1 | hypothetical protein | - |
| SCLO_RS21820 () | 90826..90990 | - | 165 | WP_007688065.1 | hypothetical protein | - |
| SCLO_RS21825 () | 91296..91730 | + | 435 | WP_007688066.1 | hypothetical protein | - |
| SCLO_RS21830 () | 91806..92213 | - | 408 | WP_007688067.1 | single-stranded DNA-binding protein | - |
| SCLO_RS21835 () | 92621..93289 | - | 669 | WP_007688068.1 | hypothetical protein | - |
| SCLO_RS21840 () | 93402..94343 | - | 942 | WP_007688069.1 | DUF2493 domain-containing protein | - |
| SCLO_RS21845 () | 94691..95431 | - | 741 | WP_007688070.1 | arsenical resistance protein ArsH | - |
| SCLO_RS21850 () | 95431..95862 | - | 432 | WP_007688071.1 | GNAT family N-acetyltransferase | - |
| SCLO_RS21855 () | 95859..96926 | - | 1068 | WP_007688072.1 | ACR3 family arsenite efflux transporter | - |
| SCLO_RS21860 () | 96923..97363 | - | 441 | WP_007688073.1 | arsenate reductase (glutaredoxin) | - |
| SCLO_RS21865 () | 97360..97896 | - | 537 | WP_007688074.1 | arsenate reductase ArsC | - |
| SCLO_RS21870 () | 97909..98247 | - | 339 | WP_013849891.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| SCLO_RS21875 () | 98300..99223 | - | 924 | WP_007688077.1 | DUF1738 domain-containing protein | - |
| SCLO_RS21880 () | 99316..101328 | - | 2013 | WP_007688079.1 | ParB/RepB/Spo0J family partition protein | - |
| SCLO_RS21885 () | 101440..105639 | - | 4200 | WP_013041753.1 | strawberry notch family protein | - |
| SCLO_RS21890 () | 105706..106572 | - | 867 | WP_007688081.1 | toprim domain-containing protein | - |
| SCLO_RS21895 () | 106634..106960 | - | 327 | WP_007688082.1 | single-stranded DNA-binding protein | - |
| SCLO_RS21900 () | 107040..107240 | + | 201 | WP_013041755.1 | hypothetical protein | - |
| SCLO_RS21905 () | 107627..108715 | + | 1089 | WP_007688083.1 | replication initiation protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|