MGE detailed information
MGE type: Conjugative plasmid MGE length: 116529 bp
Accession: NZ_AP017621 Location: 1..116529 Organism: Escherichia coli strain MRY15-131 Replicon: plasmid pMRY15-131_1
Accession: NZ_AP017621 Location: 1..116529 Organism: Escherichia coli strain MRY15-131 Replicon: plasmid pMRY15-131_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPY99_RS27255 () | 62..202 | - | 141 | WP_001333237.1 | hypothetical protein | - |
| CPY99_RS25515 () | 904..1761 | - | 858 | WP_000130940.1 | incFII family plasmid replication initiator RepA | - |
| CPY99_RS25520 () | 1754..1828 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| CPY99_RS25530 () | 2054..2314 | - | 261 | WP_000083818.1 | replication regulatory protein RepA | - |
| CPY99_RS25535 () | 2553..3126 | - | 574 | Protein_4 | DUF2726 domain-containing protein | - |
| CPY99_RS25540 () | 3164..3373 | - | 210 | WP_001333231.1 | hemolysin expression modulator Hha | - |
| CPY99_RS25545 () | 3419..3880 | - | 462 | WP_001233871.1 | thermonuclease family protein | - |
| CPY99_RS25550 () | 4123..4335 | - | 213 | WP_012311405.1 | hypothetical protein | - |
| CPY99_RS25555 () | 4473..5033 | - | 561 | WP_000139359.1 | fertility inhibition protein FinO | - |
| CPY99_RS25560 () | 5088..5834 | - | 747 | WP_000205777.1 | conjugal transfer pilus acetylase TraX | - |
| CPY99_RS25565 () | 5854..6714 | - | 861 | Protein_10 | Multifunctional conjugation protein TraI | Relaxase |
| CPY99_RS25575 () | 6770..7474 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CPY99_RS25585 () | 7525..8010 | + | 486 | WP_001774155.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| CPY99_RS25590 () | 8013..10979 | + | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| CPY99_RS25595 () | 11058..12062 | + | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| CPY99_RS25600 () | 12281..12919 | - | 639 | WP_061093065.1 | hypothetical protein | - |
| CPY99_RS25605 () | 12919..13173 | - | 255 | WP_000343103.1 | hypothetical protein | - |
| CPY99_RS25610 () | 13525..14526 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| CPY99_RS25615 () | 14702..15046 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| CPY99_RS25625 () | 15632..16336 | + | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| CPY99_RS25635 () | 16784..17797 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| CPY99_RS25640 () | 17953..18426 | + | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| CPY99_RS25645 () | 18496..19200 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CPY99_RS25655 () | 19322..20227 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| CPY99_RS25660 () | 20224..21462 | + | 1239 | WP_000004159.1 | MFS transporter | - |
| CPY99_RS25665 () | 21462..22046 | + | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| CPY99_RS25675 () | 22539..23048 | - | 510 | Protein_26 | IS6 family transposase IS6100 | Transposase |
| CPY99_RS25680 () | 23100..23804 | - | 705 | WP_096427337.1 | IS6 family transposase IS26 | Transposase |
| CPY99_RS25685 () | 23864..24724 | - | 861 | Protein_28 | conjugal transfer protein TraN | - |
| CPY99_RS25690 () | 24721..25359 | - | 639 | WP_001104248.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CPY99_RS25695 () | 25387..25839 | - | 453 | WP_000069427.1 | hypothetical protein | - |
| CPY99_RS25700 () | 25869..26330 | - | 462 | WP_000277845.1 | hypothetical protein | - |
| CPY99_RS25705 () | 26356..27348 | - | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| CPY99_RS25710 () | 27345..27977 | - | 633 | WP_001203745.1 | type-F conjugative transfer system protein TraW | - |
| CPY99_RS25715 () | 27974..28360 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| CPY99_RS25720 () | 28357..30984 | - | 2628 | WP_001064268.1 | type IV secretion system protein TraC | - |
| CPY99_RS25725 () | 31144..31365 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| CPY99_RS25730 () | 31500..32015 | - | 516 | WP_000809906.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CPY99_RS25735 () | 32012..32263 | - | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| CPY99_RS25740 () | 32260..32577 | - | 318 | WP_001057292.1 | conjugal transfer protein TrbD | - |
| CPY99_RS25745 () | 32574..33146 | - | 573 | WP_000002780.1 | conjugal transfer protein TraP | - |
| CPY99_RS25750 () | 33136..34563 | - | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| CPY99_RS25755 () | 34563..35267 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| CPY99_RS25760 () | 35278..35844 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| CPY99_RS25765 () | 35866..36177 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CPY99_RS25770 () | 36192..36551 | - | 360 | WP_000340272.1 | type IV conjugative transfer system pilin TraA | - |
| CPY99_RS25775 () | 36585..36812 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| CPY99_RS25780 () | 36906..37592 | - | 687 | WP_000332484.1 | PAS domain-containing protein | - |
| CPY99_RS25785 () | 37783..38166 | - | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| CPY99_RS25790 () | 38443..39090 | + | 648 | WP_000614936.1 | hypothetical protein | VF |
| CPY99_RS25795 () | 39387..40208 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| CPY99_RS25800 () | 40329..40616 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| CPY99_RS25805 () | 40641..40847 | - | 207 | WP_000547939.1 | hypothetical protein | - |
| CPY99_RS25815 () | 41538..41696 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 41740..41771 | - | 32 | NuclAT_1 | - | Antitoxin Detail |
| - () | 41740..41771 | - | 32 | NuclAT_1 | - | Antitoxin Detail |
| - () | 41740..41771 | - | 32 | NuclAT_1 | - | Antitoxin Detail |
| - () | 41740..41771 | - | 32 | NuclAT_1 | - | Antitoxin Detail |
| - () | 43213..43410 | - | 198 | NuclAT_0 | - | - |
| - () | 43213..43410 | - | 198 | NuclAT_0 | - | - |
| - () | 43213..43410 | - | 198 | NuclAT_0 | - | - |
| - () | 43213..43410 | - | 198 | NuclAT_0 | - | - |
| CPY99_RS27260 () | 43222..43410 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| CPY99_RS25825 () | 43422..44141 | - | 720 | WP_001276228.1 | plasmid SOS inhibition protein A | - |
| CPY99_RS25830 () | 44138..44572 | - | 435 | WP_000845895.1 | conjugation system SOS inhibitor PsiB | - |
| CPY99_RS25835 () | 44627..46585 | - | 1959 | WP_001145469.1 | ParB/RepB/Spo0J family partition protein | - |
| CPY99_RS25840 () | 46644..46877 | - | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| CPY99_RS25845 () | 46933..47460 | - | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| CPY99_RS25875 () | 48357..48920 | - | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| CPY99_RS25880 () | 48965..50326 | - | 1362 | WP_000170681.1 | DUF3560 domain-containing protein | - |
| CPY99_RS25885 () | 50378..50608 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| CPY99_RS27325 () | 51286..51614 | + | 329 | Protein_64 | pilus assembly protein | - |
| CPY99_RS25905 () | 51602..51784 | - | 183 | WP_001027505.1 | hypothetical protein | - |
| CPY99_RS25910 () | 51784..52245 | - | 462 | WP_042007484.1 | DUF1380 family protein | - |
| CPY99_RS25915 () | 52245..52547 | - | 303 | WP_072256028.1 | antirestriction protein | - |
| CPY99_RS25925 () | 53072..54043 | + | 972 | WP_000082154.1 | IS110 family transposase ISEc32 | Transposase |
| CPY99_RS25930 () | 54096..54793 | - | 698 | Protein_69 | IS1 family transposase | - |
| CPY99_RS25940 () | 54847..55179 | - | 333 | Protein_70 | hypothetical protein | - |
| CPY99_RS27330 () | 55248..55586 | - | 339 | WP_001513511.1 | hypothetical protein | - |
| CPY99_RS25955 () | 56398..57369 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CPY99_RS25960 () | 57369..58535 | - | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| CPY99_RS25965 () | 58835..59532 | - | 698 | Protein_74 | IS1 family transposase | - |
| CPY99_RS25975 () | 59688..61190 | - | 1503 | WP_000715078.1 | hypothetical protein | - |
| CPY99_RS25980 () | 61799..62248 | - | 450 | WP_000238252.1 | hypothetical protein | - |
| CPY99_RS25985 () | 62366..62845 | + | 480 | WP_000190053.1 | hypothetical protein | - |
| CPY99_RS25995 () | 63285..63512 | + | 228 | Protein_78 | malate dehydrogenase | - |
| CPY99_RS26000 () | 63509..63640 | - | 132 | Protein_79 | phosphopyruvate hydratase | - |
| CPY99_RS26005 () | 63638..63895 | + | 258 | Protein_80 | Tn3 family transposase | - |
| CPY99_RS26010 () | 64129..64986 | - | 858 | WP_000968140.1 | hypothetical protein | ARG |
| CPY99_RS26015 () | 64983..65840 | - | 858 | WP_000992806.1 | Manganese transport system membrane protein MntB | ARG |
| CPY99_RS26020 () | 65837..66664 | - | 828 | WP_061093066.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| CPY99_RS26025 () | 66664..67578 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| CPY99_RS26040 () | 67934..68631 | + | 698 | Protein_85 | IS1 family transposase IS1S | Transposase |
| CPY99_RS26045 () | 68811..69324 | - | 514 | Protein_86 | DUF4113 domain-containing protein | - |
| CPY99_RS26050 () | 69385..69489 | - | 105 | Protein_87 | AAA family ATPase | - |
| CPY99_RS26055 () | 69491..69814 | - | 324 | Protein_88 | IS21 family transposase IS21 | Transposase |
| CPY99_RS26060 () | 70063..71276 | + | 1214 | WP_085947772.1 | IS3 family transposase ISCfr6 | Transposase |
| CPY99_RS26065 () | 71821..72798 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| CPY99_RS26070 () | 73083..73823 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| CPY99_RS26075 () | 73944..74132 | - | 189 | WP_014640565.1 | hypothetical protein | - |
| CPY99_RS26080 () | 74506..75408 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| CPY99_RS26085 () | 75477..76586 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| CPY99_RS26095 () | 77019..77972 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| CPY99_RS26110 () | 79245..79403 | - | 159 | WP_001312823.1 | integrase core domain-containing protein | - |
| CPY99_RS26115 () | 79587..80800 | + | 1214 | WP_162842477.1 | IS3 family transposase IS629 | Transposase |
| CPY99_RS26120 () | 80948..81216 | - | 269 | Protein_98 | IS3 family transposase ISLad1 | Transposase |
| CPY99_RS26130 () | 81273..81970 | + | 698 | Protein_99 | IS1 family transposase | - |
| CPY99_RS26135 () | 82032..82823 | - | 792 | WP_000016493.1 | site-specific integrase | - |
| CPY99_RS26140 () | 82820..83509 | - | 690 | WP_000796228.1 | hypothetical protein | - |
| CPY99_RS26145 () | 83553..83903 | - | 351 | WP_000493379.1 | hypothetical protein | - |
| CPY99_RS26150 () | 84448..85536 | + | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| CPY99_RS26155 () | 85538..87763 | + | 2226 | WP_000698737.1 | phage T7 exclusion protein | - |
| CPY99_RS26160 () | 87813..88712 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| CPY99_RS26165 () | 88702..88992 | - | 291 | WP_000111771.1 | hypothetical protein | - |
| CPY99_RS26175 () | 89288..89518 | + | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CPY99_RS26180 () | 89515..89931 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CPY99_RS26185 () | 90093..92231 | - | 2139 | WP_000350638.1 | AAA family ATPase | - |
| CPY99_RS26190 () | 92585..92842 | + | 258 | WP_000343085.1 | hypothetical protein | - |
| CPY99_RS26195 () | 92842..93432 | + | 591 | WP_000194575.1 | hypothetical protein | - |
| CPY99_RS26200 () | 93695..95251 | + | 1557 | WP_000818556.1 | AAA family ATPase | - |
| CPY99_RS26205 () | 95443..96060 | + | 618 | WP_000521603.1 | hypothetical protein | - |
| CPY99_RS26210 () | 96353..97432 | - | 1080 | WP_001089727.1 | permease | - |
| CPY99_RS26215 () | 97537..97860 | + | 324 | WP_001175594.1 | helix-turn-helix domain-containing protein | - |
| CPY99_RS26220 () | 97961..98341 | + | 381 | Protein_116 | NAD(P)H-dependent oxidoreductase | - |
| CPY99_RS26225 () | 98394..99098 | - | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| CPY99_RS26230 () | 99233..99328 | + | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| CPY99_RS26235 () | 99454..100191 | + | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| CPY99_RS27265 () | 100136..100306 | + | 171 | WP_170852050.1 | rRNA adenine methyltransferase | - |
| CPY99_RS26240 () | 100821..101270 | + | 450 | WP_013362817.1 | hypothetical protein | - |
| CPY99_RS27270 () | 101231..101572 | + | 342 | WP_023909256.1 | 60 kDa chaperonin 2 | VF |
| CPY99_RS26250 () | 101799..103331 | + | 1533 | WP_013362816.1 | IS91 family transposase ISVsa3 | Transposase |
| CPY99_RS26265 () | 103654..104358 | - | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| CPY99_RS26275 () | 104465..105325 | + | 861 | WP_000557452.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| CPY99_RS26280 () | 105338..105880 | + | 543 | WP_002063889.1 | AAA family ATPase | - |
| CPY99_RS26285 () | 105972..107020 | + | 1049 | Protein_127 | IS3 family transposase ISKpn11 | Transposase |
| CPY99_RS26290 () | 107074..107778 | - | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| CPY99_RS26295 () | 107841..108254 | - | 414 | Protein_129 | serine hydrolase | - |
| CPY99_RS26300 () | 108437..108994 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CPY99_RS26305 () | 109158..109547 | + | 390 | Protein_131 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CPY99_RS26310 () | 109615..110712 | - | 1098 | Protein_132 | TonB-dependent receptor | - |
| CPY99_RS26315 () | 110769..111737 | - | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| CPY99_RS26320 () | 111772..112647 | - | 876 | WP_032277257.1 | Beta-lactamase CTX-M-97 | ARG |
| CPY99_RS26325 () | 112897..113076 | - | 180 | Protein_135 | IS1380 family transposase | - |
| CPY99_RS26330 () | 113141..113845 | + | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| CPY99_RS26335 () | 113911..114456 | + | 546 | Protein_137 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CPY99_RS26340 () | 114492..114907 | - | 416 | Protein_138 | IS1 family transposase | - |
| CPY99_RS26350 () | 115156..115557 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CPY99_RS27145 () | 115490..115747 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CPY99_RS26355 () | 115840..116493 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|