MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 66126 bp
Accession: NZ_AP017603 Location: 1416956..1483081 Organism: Sphingopyxis sp. EG6 Replicon: chromosome
Accession: NZ_AP017603 Location: 1416956..1483081 Organism: Sphingopyxis sp. EG6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPYCW_RS06995 () | 1412181..1413359 | - | 1179 | WP_120216194.1 | CoA transferase | - |
| SPYCW_RS07000 () | 1413501..1416740 | + | 3240 | WP_120216195.1 | PD40 domain-containing protein | - |
| SPYCW_RS07010 () | 1416987..1417616 | - | 630 | WP_120216196.1 | YIP1 family protein | - |
| SPYCW_RS07015 () | 1417797..1418578 | - | 782 | Protein_1388 | IS5 family transposase ISMra2 | Transposase |
| SPYCW_RS07020 () | 1418656..1419030 | + | 375 | WP_120216197.1 | heat shock protein HspQ | - |
| SPYCW_RS07025 () | 1419034..1419906 | - | 873 | WP_120216198.1 | ABC transporter permease | - |
| SPYCW_RS07030 () | 1420025..1420720 | + | 696 | WP_120218159.1 | GcrA cell cycle regulator | - |
| SPYCW_RS07035 () | 1420731..1421129 | + | 399 | WP_120216199.1 | PaaI family thioesterase | - |
| SPYCW_RS07040 () | 1421186..1422016 | - | 831 | WP_120216200.1 | porin family protein | - |
| SPYCW_RS07045 () | 1422186..1424165 | + | 1980 | WP_120216201.1 | DNA topoisomerase IV subunit B | - |
| SPYCW_RS07050 () | 1424203..1425513 | + | 1311 | WP_120216202.1 | serine hydrolase | - |
| SPYCW_RS07055 () | 1425532..1426323 | - | 792 | WP_120216203.1 | HTH-type transcriptional regulator ArgP | VF |
| SPYCW_RS07060 () | 1426320..1426721 | - | 402 | WP_120218160.1 | Co2+/Mg2+ efflux protein ApaG | - |
| SPYCW_RS07065 () | 1426739..1427944 | - | 1206 | WP_120216204.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| SPYCW_RS07070 () | 1428062..1429108 | - | 1047 | WP_120218161.1 | 3-isopropylmalate dehydrogenase | - |
| SPYCW_RS07075 () | 1429275..1430012 | - | 738 | WP_120216205.1 | DNA repair protein RecO | - |
| SPYCW_RS07080 () | 1430000..1430392 | - | 393 | WP_120216206.1 | PaaI family thioesterase | - |
| SPYCW_RS07085 () | 1430446..1432380 | - | 1935 | WP_120216207.1 | excinuclease ABC subunit UvrC | - |
| SPYCW_RS07090 () | 1432449..1433168 | + | 720 | WP_120216208.1 | hypothetical protein | VF |
| SPYCW_RS07095 () | 1433439..1433966 | - | 528 | WP_120216209.1 | F0F1 ATP synthase subunit B | - |
| SPYCW_RS07100 () | 1433959..1434459 | - | 501 | WP_120216210.1 | ATPase | - |
| SPYCW_RS07105 () | 1434539..1434766 | - | 228 | WP_003044110.1 | F0F1 ATP synthase subunit C | - |
| SPYCW_RS07110 () | 1434808..1435593 | - | 786 | WP_120216211.1 | F0F1 ATP synthase subunit A | - |
| SPYCW_RS07115 () | 1435661..1435981 | - | 321 | WP_120216212.1 | AtpZ/AtpI family protein | - |
| SPYCW_RS07120 () | 1436191..1436592 | - | 402 | WP_120218162.1 | YdbL family protein | - |
| SPYCW_RS07125 () | 1436610..1436825 | - | 216 | WP_120216213.1 | YnbE family lipoprotein | - |
| SPYCW_RS07130 () | 1436822..1439374 | - | 2553 | WP_120218163.1 | YdbH domain-containing protein | - |
| SPYCW_RS07135 () | 1440180..1440815 | + | 636 | WP_120216214.1 | hypothetical protein | - |
| SPYCW_RS07140 () | 1440935..1442176 | + | 1242 | WP_120216215.1 | hypothetical protein ; Integrase | Integrase |
| SPYCW_RS07145 () | 1442214..1442651 | + | 438 | WP_120216216.1 | nuclease | - |
| SPYCW_RS07150 () | 1442670..1443560 | - | 891 | WP_120216217.1 | 3'-5' exonuclease | - |
| SPYCW_RS07155 () | 1443550..1445595 | - | 2046 | WP_120216218.1 | ATP-binding protein | - |
| SPYCW_RS07160 () | 1445592..1446914 | - | 1323 | WP_120216219.1 | SIR2 family protein | - |
| SPYCW_RS07165 () | 1446937..1447953 | - | 1017 | WP_120216220.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| SPYCW_RS07170 () | 1447946..1448539 | - | 594 | WP_113480769.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| SPYCW_RS07175 () | 1448773..1449729 | + | 957 | WP_120216221.1 | DUF1738 domain-containing protein | - |
| SPYCW_RS07180 () | 1449889..1452015 | + | 2127 | WP_120216222.1 | ParB/RepB/Spo0J family partition protein | - |
| SPYCW_RS07185 () | 1452137..1452553 | + | 417 | WP_120216223.1 | hypothetical protein | - |
| SPYCW_RS07190 () | 1452550..1452816 | + | 267 | WP_120216224.1 | hypothetical protein | - |
| SPYCW_RS07195 () | 1452813..1453109 | + | 297 | WP_120216225.1 | hypothetical protein | - |
| SPYCW_RS07200 () | 1453270..1457577 | + | 4308 | WP_120216226.1 | strawberry notch family protein | - |
| SPYCW_RS07205 () | 1457577..1458614 | + | 1038 | WP_120216227.1 | toprim domain-containing protein | - |
| SPYCW_RS07210 () | 1458926..1459852 | + | 927 | WP_120218164.1 | DUF2493 domain-containing protein | - |
| SPYCW_RS07215 () | 1459939..1460193 | + | 255 | WP_120216228.1 | plasmid stabilization protein | Antitoxin Detail |
| SPYCW_RS07220 () | 1460190..1460612 | + | 423 | WP_120216229.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| SPYCW_RS18955 () | 1460896..1461063 | + | 168 | WP_172595439.1 | hypothetical protein | - |
| SPYCW_RS07225 () | 1461196..1461636 | + | 441 | WP_120216230.1 | hypothetical protein | - |
| SPYCW_RS07230 () | 1462208..1462534 | + | 327 | WP_113480781.1 | DUF736 domain-containing protein | - |
| SPYCW_RS07235 () | 1462825..1463085 | + | 261 | WP_120216231.1 | helix-turn-helix transcriptional regulator | - |
| SPYCW_RS07240 () | 1463188..1463451 | + | 264 | WP_120216232.1 | DUF2285 domain-containing protein | - |
| SPYCW_RS07250 () | 1463810..1464337 | + | 528 | WP_197715663.1 | DUF2285 domain-containing protein | - |
| SPYCW_RS07255 () | 1464583..1465563 | - | 981 | WP_120216234.1 | hypothetical protein | - |
| SPYCW_RS07260 () | 1465837..1466382 | + | 546 | WP_197715664.1 | hypothetical protein | - |
| SPYCW_RS07265 () | 1466350..1467131 | - | 782 | Protein_1438 | IS5 family transposase ISMra2 | Transposase |
| SPYCW_RS07270 () | 1467933..1468214 | + | 282 | WP_113480787.1 | helix-turn-helix domain-containing protein | - |
| SPYCW_RS07275 () | 1468233..1469393 | + | 1161 | WP_120216235.1 | replication initiator protein A | - |
| SPYCW_RS07280 () | 1469390..1470043 | + | 654 | WP_120216236.1 | Iron-sulfur cluster carrier protein | VF |
| SPYCW_RS07285 () | 1470040..1470291 | + | 252 | WP_120216237.1 | hypothetical protein | - |
| SPYCW_RS07290 () | 1470327..1470809 | + | 483 | WP_120218165.1 | DUF2840 domain-containing protein | - |
| SPYCW_RS07295 () | 1470848..1471351 | + | 504 | WP_197715683.1 | S26 family signal peptidase | - |
| SPYCW_RS07300 () | 1471420..1471755 | + | 336 | WP_120218166.1 | DUF736 domain-containing protein | - |
| SPYCW_RS07305 () | 1471759..1472538 | + | 780 | WP_120216239.1 | lytic transglycosylase domain-containing protein | - |
| SPYCW_RS07310 () | 1472782..1474521 | + | 1740 | WP_120216240.1 | VirD2 family relaxase/mobilization nuclease | - |
| SPYCW_RS07315 () | 1474548..1476539 | + | 1992 | WP_120216241.1 | hypothetical protein | VF |
| SPYCW_RS07320 () | 1476544..1476990 | + | 447 | WP_120216242.1 | CopG family transcriptional regulator | - |
| SPYCW_RS07325 () | 1477161..1478144 | + | 984 | WP_120216243.1 | hypothetical protein | VF |
| SPYCW_RS07330 () | 1478141..1478473 | + | 333 | WP_120216244.1 | TrbC/VirB2 family protein | - |
| SPYCW_RS07335 () | 1478473..1478754 | + | 282 | WP_113480799.1 | VirB3 family type IV secretion system protein | - |
| SPYCW_RS07340 () | 1478769..1481216 | + | 2448 | WP_120216245.1 | conjugal transfer protein TrbE | - |
| SPYCW_RS07345 () | 1481222..1482001 | + | 780 | WP_120216246.1 | P-type conjugative transfer protein TrbJ | - |
| SPYCW_RS07350 () | 1482012..1482296 | + | 285 | WP_120216247.1 | putative entry exclusion protein TrbK-alt | - |
| SPYCW_RS07355 () | 1482300..1483658 | + | 1359 | WP_120216248.1 | P-type conjugative transfer protein TrbL | - |
| SPYCW_RS07360 () | 1483655..1484344 | + | 690 | WP_120216249.1 | conjugal transfer protein TrbF | - |
| SPYCW_RS07365 () | 1484341..1485321 | + | 981 | WP_120216250.1 | P-type conjugative transfer protein TrbG | - |
| SPYCW_RS07370 () | 1485390..1486502 | + | 1113 | WP_197715665.1 | TrbI/VirB10 family protein | - |
| SPYCW_RS07375 () | 1486504..1486743 | + | 240 | WP_120216252.1 | DUF2274 domain-containing protein | - |
| SPYCW_RS07380 () | 1486738..1487631 | - | 894 | WP_120216253.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|