MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 17815 bp
Accession: NZ_AP012334 Location: 755685..773499 Organism: Scardovia inopinata JCM 12537 Replicon: chromosome
Accession: NZ_AP012334 Location: 755685..773499 Organism: Scardovia inopinata JCM 12537 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SCIP_RS03020 () | 752780..753280 | + | 501 | WP_006293047.1 | Holliday junction resolvase RuvX | - |
| SCIP_RS03025 () | 753277..754500 | + | 1224 | WP_040590570.1 | endolytic transglycosylase MltG | - |
| SCIP_RS03030 () | 754820..756100 | + | 1281 | WP_006293049.1 | hypothetical protein | - |
| SCIP_RS07510 () | 756176..756691 | - | 516 | WP_006293050.1 | prepilin peptidase | - |
| SCIP_RS03045 () | 756798..758030 | + | 1233 | WP_006293051.1 | chorismate synthase | - |
| SCIP_RS03050 () | 758023..759762 | + | 1740 | WP_006293052.1 | bifunctional shikimate kinase/3-dehydroquinate synthase | - |
| SCIP_RS03055 () | 759775..760272 | + | 498 | WP_081442808.1 | type II 3-dehydroquinate dehydratase | - |
| SCIP_RS03060 () | 760398..762080 | + | 1683 | WP_006293054.1 | CTP synthase | - |
| SCIP_RS03065 () | 762270..762476 | - | 207 | WP_006293055.1 | transposon-encoded TnpW family protein | - |
| SCIP_RS07735 () | 762595..762957 | - | 363 | WP_115672902.1 | cysteine-rich VLP domain-containing protein | - |
| SCIP_RS03070 () | 763110..763388 | + | 279 | WP_040590572.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| SCIP_RS03075 () | 763385..763675 | + | 291 | WP_006293058.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| SCIP_RS03080 () | 763712..764683 | - | 972 | WP_196792690.1 | MobA/MobL family protein | - |
| SCIP_RS08170 () | 764989..765168 | + | 180 | WP_196792704.1 | hypothetical protein | - |
| SCIP_RS03085 () | 765336..765587 | - | 252 | WP_196792691.1 | DUF3847 domain-containing protein | - |
| SCIP_RS03090 () | 765584..766015 | - | 432 | WP_006293061.1 | sigma-70 family RNA polymerase sigma factor | - |
| SCIP_RS07740 () | 766117..766533 | - | 417 | WP_006293062.1 | hypothetical protein | - |
| SCIP_RS03100 () | 766922..767452 | - | 531 | WP_196792692.1 | hypothetical protein | - |
| SCIP_RS08175 () | 767486..767686 | - | 201 | WP_196792693.1 | hypothetical protein | - |
| SCIP_RS03105 () | 767683..768480 | - | 798 | Protein_610 | ABC transporter ATP-binding protein | - |
| SCIP_RS03110 () | 768597..768797 | - | 201 | WP_006293063.1 | PLDc N-terminal domain-containing protein | - |
| SCIP_RS03115 () | 768794..769915 | - | 1122 | WP_006293064.1 | HTH-type transcriptional regulator Xre | VF |
| SCIP_RS03120 () | 770042..771928 | - | 1887 | WP_006293065.1 | hypothetical protein ; Integrase | Integrase |
| SCIP_RS03125 () | 772169..773623 | + | 1455 | WP_115672904.1 | Fe-S cluster assembly protein SufB | - |
| SCIP_RS03130 () | 773623..774906 | + | 1284 | WP_006293067.1 | Fe-S cluster assembly protein SufD | - |
| SCIP_RS03135 () | 774912..775691 | + | 780 | WP_006293068.1 | Fe-S cluster assembly ATPase SufC | - |
| SCIP_RS03140 () | 775702..776985 | + | 1284 | WP_006293069.1 | SufS family cysteine desulfurase | - |
| SCIP_RS03145 () | 777083..777709 | + | 627 | WP_040590575.1 | SUF system NifU family Fe-S cluster assembly protein | - |
| SCIP_RS03150 () | 777852..778202 | + | 351 | Protein_619 | metal-sulfur cluster assembly factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|