MGE detailed information
MGE type: Prophage MGE length: 58666 bp
Accession: NC_022364 Location: 1675294..1733959 Organism: Escherichia coli LY180 Replicon: chromosome
Accession: NC_022364 Location: 1675294..1733959 Organism: Escherichia coli LY180 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LY180_RS08140 () | 1670684..1671382 | + | 699 | WP_000577184.1 | GntR family transcriptional regulator | - |
| LY180_RS08145 () | 1671427..1672326 | - | 900 | WP_000087220.1 | O-acetylserine/cysteine exporter | - |
| LY180_RS08150 () | 1672521..1673708 | + | 1188 | WP_001054196.1 | efflux MFS transporter YdeE | - |
| LY180_RS08155 () | 1673835..1673930 | + | 96 | WP_000901367.1 | protein MgtS | - |
| LY180_RS08160 () | 1674149..1675039 | - | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| LY180_RS08165 () | 1675294..1675686 | - | 393 | WP_000671744.1 | YdeI family stress tolerance OB fold protein | - |
| LY180_RS08170 () | 1675962..1676480 | + | 519 | WP_001024810.1 | 2-oxo-tetronate isomerase | - |
| LY180_RS08175 () | 1676525..1678570 | - | 2046 | WP_001299399.1 | peptidyl-dipeptidase Dcp | - |
| LY180_RS08180 () | 1678707..1679453 | + | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| LY180_RS08185 () | 1679542..1680228 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| LY180_RS08190 () | 1680406..1680609 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LY180_RS08195 () | 1680645..1682105 | - | 1461 | WP_000527779.1 | mannitol dehydrogenase family protein | - |
| LY180_RS08200 () | 1682194..1683561 | - | 1368 | Protein_1570 | MHS family MFS transporter | - |
| LY180_RS26290 () | 1684082..1684195 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| LY180_RS08205 () | 1684264..1684497 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LY180_RS24620 () | 1684814..1684993 | + | 180 | WP_016230953.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| LY180_RS08210 () | 1684962..1686170 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| LY180_RS08215 () | 1686269..1686742 | + | 474 | WP_077631333.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LY180_RS08220 () | 1686840..1687415 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| LY180_RS24630 () | 1687415..1690489 | - | 3075 | WP_000279140.1 | phage tail protein | - |
| LY180_RS08240 () | 1690554..1691153 | - | 600 | WP_001233072.1 | Outer membrane protein X | VF |
| LY180_RS08245 () | 1691224..1694637 | - | 3414 | WP_000033679.1 | host specificity protein J | - |
| LY180_RS08250 () | 1694698..1695330 | - | 633 | WP_000090891.1 | tail assembly protein | - |
| LY180_RS08255 () | 1695267..1696010 | - | 744 | WP_001349921.1 | C40 family peptidase | - |
| LY180_RS08260 () | 1696016..1696714 | - | 699 | WP_001152622.1 | phage minor tail protein L | - |
| LY180_RS08265 () | 1696714..1697043 | - | 330 | WP_000847360.1 | phage tail protein | - |
| LY180_RS08270 () | 1697040..1699601 | - | 2562 | WP_000840335.1 | phage tail tape measure protein | - |
| LY180_RS08275 () | 1699594..1700028 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| LY180_RS08280 () | 1700010..1700432 | - | 423 | WP_000479150.1 | phage minor tail protein G | - |
| LY180_RS08285 () | 1700448..1701188 | - | 741 | WP_001349920.1 | phage tail protein | - |
| LY180_RS08290 () | 1701196..1701591 | - | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| LY180_RS08295 () | 1701588..1702166 | - | 579 | WP_000985119.1 | phage tail protein | - |
| LY180_RS08300 () | 1702178..1702531 | - | 354 | WP_000753007.1 | head-tail joining protein | - |
| LY180_RS08305 () | 1702543..1702941 | - | 399 | WP_000158921.1 | DNA-packaging protein FI | - |
| LY180_RS08310 () | 1702983..1704008 | - | 1026 | WP_000063280.1 | major capsid protein | - |
| LY180_RS08315 () | 1704064..1704396 | - | 333 | WP_001295978.1 | head decoration protein | - |
| LY180_RS08320 () | 1704406..1705725 | - | 1320 | WP_000123305.1 | S49 family peptidase | - |
| LY180_RS08325 () | 1705706..1707307 | - | 1602 | WP_001349919.1 | phage portal protein | - |
| LY180_RS08330 () | 1707304..1707510 | - | 207 | WP_000198149.1 | gpW family protein | - |
| LY180_RS08335 () | 1707507..1709432 | - | 1926 | WP_001027259.1 | phage terminase large subunit family protein | - |
| LY180_RS08340 () | 1709407..1709952 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| LY180_RS08355 () | 1710341..1710574 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LY180_RS08360 () | 1710632..1711042 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LY180_RS08365 () | 1711194..1711367 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LY180_RS08370 () | 1711539..1711694 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| LY180_RS26295 () | 1711774..1711839 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| LY180_RS24635 () | 1711842..1712030 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| LY180_RS08375 () | 1712041..1712253 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LY180_RS08380 () | 1712616..1713113 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LY180_RS08385 () | 1713110..1713643 | - | 534 | WP_001092971.1 | lysozyme | - |
| LY180_RS08390 () | 1713640..1713951 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| LY180_RS08395 () | 1713956..1714171 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LY180_RS08400 () | 1714925..1715140 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LY180_RS08405 () | 1715441..1715653 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LY180_RS26300 () | 1715708..1715797 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| LY180_RS08410 () | 1716075..1716827 | - | 753 | WP_001047135.1 | antitermination protein | - |
| LY180_RS08415 () | 1716841..1717890 | - | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| LY180_RS08420 () | 1717892..1718170 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| LY180_RS08425 () | 1718237..1718488 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| LY180_RS08430 () | 1718705..1718860 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LY180_RS08435 () | 1718932..1719219 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LY180_RS08440 () | 1719219..1719458 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LY180_RS24640 () | 1719483..1719788 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| LY180_RS08445 () | 1719991..1720323 | + | 333 | WP_001301033.1 | protein FlxA | - |
| LY180_RS08450 () | 1720760..1722073 | - | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| LY180_RS26710 () | 1722842..1723129 | - | 288 | Protein_1623 | hypothetical protein | - |
| LY180_RS08465 () | 1723740..1724096 | - | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| LY180_RS08470 () | 1724093..1724515 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| LY180_RS08475 () | 1724556..1725521 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| LY180_RS08480 () | 1725502..1726023 | - | 522 | WP_000705358.1 | hypothetical protein | - |
| LY180_RS08485 () | 1726007..1726237 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LY180_RS08490 () | 1726321..1726728 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LY180_RS08495 () | 1726895..1727050 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LY180_RS08500 () | 1727210..1727428 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| LY180_RS08510 () | 1727996..1728184 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LY180_RS08515 () | 1728181..1728372 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LY180_RS08520 () | 1728465..1730942 | + | 2478 | WP_000048348.1 | exonuclease | - |
| LY180_RS08525 () | 1731015..1731266 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| LY180_RS08530 () | 1731301..1732581 | + | 1281 | WP_000876956.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LY180_RS08535 () | 1732751..1733959 | + | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| LY180_RS25855 () | 1733969..1734049 | - | 81 | WP_023352561.1 | hypothetical protein | - |
| LY180_RS08540 () | 1734107..1735126 | - | 1020 | WP_000836076.1 | Zn-dependent oxidoreductase | - |
| LY180_RS08545 () | 1735138..1736352 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LY180_RS08550 () | 1736558..1736884 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| LY180_RS08555 () | 1737019..1737360 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| LY180_RS08560 () | 1737395..1737955 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LY180_RS08565 () | 1737958..1738668 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|