MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 134667 bp
Accession: NC_022234 Location: 1212674..1347340 Organism: Variovorax paradoxus B4 Replicon: chromosome
Accession: NC_022234 Location: 1212674..1347340 Organism: Variovorax paradoxus B4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VAPA_RS32785 () | 1207834..1208168 | - | 335 | Protein_1157 | DUF4102 domain-containing protein | - |
| VAPA_RS32790 () | 1208382..1209032 | + | 651 | WP_021004559.1 | ATP-binding cassette domain-containing protein | - |
| VAPA_RS32795 () | 1209090..1209413 | - | 324 | WP_021004560.1 | hypothetical protein | - |
| VAPA_RS32800 () | 1209476..1209772 | - | 297 | WP_021004561.1 | hypothetical protein | - |
| VAPA_RS32805 () | 1209925..1210806 | - | 882 | WP_021004562.1 | LysR family transcriptional regulator | - |
| VAPA_RS32810 () | 1210927..1212120 | + | 1194 | WP_021004563.1 | muconate cycloisomerase family protein | - |
| VAPA_RS32815 () | 1212123..1212401 | + | 279 | WP_021004564.1 | muconolactone Delta-isomerase | - |
| VAPA_RS32820 () | 1212438..1213424 | + | 987 | WP_021004565.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| VAPA_RS32825 () | 1213628..1213849 | - | 222 | WP_080666993.1 | helix-turn-helix domain-containing protein | - |
| VAPA_RS34720 () | 1214090..1214350 | + | 261 | WP_155248155.1 | hypothetical protein | - |
| VAPA_RS32830 () | 1214608..1215921 | - | 1314 | WP_021004568.1 | IS1380 family transposase ISThsp13 | Transposase |
| VAPA_RS34725 () | 1216452..1216628 | + | 177 | WP_155248156.1 | hypothetical protein | - |
| VAPA_RS32840 () | 1216749..1217534 | + | 786 | WP_155248157.1 | hypothetical protein | - |
| VAPA_RS32845 () | 1217751..1218023 | + | 273 | WP_041946734.1 | hypothetical protein | - |
| VAPA_RS32850 () | 1218322..1218831 | + | 510 | WP_155248158.1 | hypothetical protein | - |
| VAPA_RS32855 () | 1219173..1219679 | + | 507 | WP_155248159.1 | hypothetical protein | - |
| VAPA_RS34300 () | 1220273..1220839 | + | 567 | WP_080666995.1 | DUF2846 domain-containing protein | - |
| VAPA_RS32865 () | 1220986..1221255 | + | 270 | WP_021004575.1 | hypothetical protein | - |
| VAPA_RS32870 () | 1221348..1221572 | + | 225 | WP_041946739.1 | hypothetical protein | - |
| VAPA_RS34310 () | 1222342..1223153 | + | 812 | WP_196232540.1 | IS5 family transposase | - |
| VAPA_RS32885 () | 1224121..1225527 | - | 1407 | WP_196232594.1 | sulfatase-like hydrolase/transferase | - |
| VAPA_RS32890 () | 1225638..1226480 | + | 843 | WP_041946932.1 | Serine/threonine-protein kinase pkn1 | VF |
| VAPA_RS32895 () | 1226613..1227584 | + | 972 | WP_021004580.1 | Bug family protein | - |
| VAPA_RS32900 () | 1227608..1229059 | + | 1452 | WP_196232608.1 | sulfatase-like hydrolase/transferase | - |
| VAPA_RS32905 () | 1229056..1229925 | + | 870 | WP_021004582.1 | Carboxylesterase NlhH | VF |
| VAPA_RS32910 () | 1230041..1231456 | + | 1416 | WP_041946934.1 | FAD-binding oxidoreductase | - |
| VAPA_RS32915 () | 1231476..1232681 | + | 1206 | WP_021004584.1 | aspartate/tyrosine/aromatic aminotransferase | - |
| VAPA_RS32920 () | 1232810..1233589 | + | 780 | WP_155248176.1 | tryptophan 2,3-dioxygenase | - |
| VAPA_RS32925 () | 1233601..1233972 | + | 372 | WP_021004586.1 | RidA family protein | - |
| VAPA_RS32930 () | 1233972..1234304 | + | 333 | WP_041946742.1 | DUF202 domain-containing protein | - |
| VAPA_RS32935 () | 1234301..1234609 | + | 309 | WP_041946743.1 | DUF202 domain-containing protein | - |
| VAPA_RS32940 () | 1234646..1235188 | - | 543 | WP_196232595.1 | MarR family transcriptional regulator | - |
| VAPA_RS32945 () | 1235362..1236468 | + | 1107 | WP_041946935.1 | porin | - |
| VAPA_RS32950 () | 1236547..1237497 | + | 951 | WP_021004591.1 | LysR family transcriptional regulator | - |
| VAPA_RS32955 () | 1237984..1238934 | + | 951 | WP_041946936.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| VAPA_RS32960 () | 1239299..1240745 | + | 1447 | Protein_1192 | IS1182 family transposase ISBusp4 | Transposase |
| VAPA_RS34730 () | 1240900..1242232 | - | 1333 | Protein_1193 | Mur ligase | - |
| VAPA_RS34315 () | 1242439..1242579 | + | 141 | WP_021004594.1 | TetR/AcrR family transcriptional regulator C-terminal domain-containing protein | - |
| VAPA_RS32970 () | 1242812..1243576 | - | 765 | WP_021004595.1 | IS21 family transposase ISCARN17 | Transposase |
| VAPA_RS32975 () | 1243573..1245186 | - | 1614 | WP_021004596.1 | IS21 family transposase ISCARN17 | Transposase |
| VAPA_RS32980 () | 1245362..1245751 | + | 390 | Protein_1197 | alpha/beta hydrolase | - |
| VAPA_RS32985 () | 1245781..1246644 | - | 864 | WP_080667051.1 | HTH-type transcriptional regulator MalT | VF |
| VAPA_RS32990 () | 1246815..1248221 | + | 1407 | WP_021004599.1 | indoleacetamide hydrolase | - |
| VAPA_RS32995 () | 1248268..1249416 | + | 1149 | WP_021004600.1 | substrate-binding domain-containing protein | - |
| VAPA_RS33000 () | 1249424..1250278 | + | 855 | WP_021004601.1 | branched-chain amino acid ABC transporter permease | - |
| VAPA_RS33005 () | 1250256..1252064 | + | 1809 | WP_021004602.1 | ATP-binding cassette domain-containing protein | - |
| VAPA_RS33010 () | 1252061..1252756 | + | 696 | WP_021004603.1 | High-affinity branched-chain amino acid transport ATP-binding protein LivF | VF |
| VAPA_RS33015 () | 1252799..1253695 | + | 897 | WP_021004604.1 | PCP degradation transcriptional activation protein | VF |
| VAPA_RS33020 () | 1253708..1255048 | - | 1341 | WP_021004605.1 | type II toxin-antitoxin system HipA family toxin | - |
| VAPA_RS33025 () | 1255051..1255356 | - | 306 | WP_021004606.1 | helix-turn-helix domain-containing protein | - |
| VAPA_RS33030 () | 1255469..1256557 | - | 1089 | WP_155248177.1 | mandelate racemase | - |
| VAPA_RS33035 () | 1256575..1257303 | - | 729 | WP_021004608.1 | High-affinity branched-chain amino acid transport ATP-binding protein LivF | VF |
| VAPA_RS33040 () | 1257300..1258082 | - | 783 | WP_021004609.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| VAPA_RS33045 () | 1258084..1259028 | - | 945 | WP_021004610.1 | branched-chain amino acid ABC transporter permease | - |
| VAPA_RS33050 () | 1259025..1259897 | - | 873 | WP_021004611.1 | branched-chain amino acid ABC transporter permease | - |
| VAPA_RS33055 () | 1259890..1261065 | - | 1176 | WP_021004612.1 | alpha-hydroxy-acid oxidizing protein | - |
| VAPA_RS33060 () | 1261096..1262271 | - | 1176 | WP_021004613.1 | ABC transporter substrate-binding protein | - |
| VAPA_RS33065 () | 1262309..1263865 | - | 1557 | WP_021004614.1 | indolepyruvate oxidoreductase subunit beta family protein | - |
| VAPA_RS33070 () | 1263862..1266024 | - | 2163 | WP_021004615.1 | indolepyruvate ferredoxin oxidoreductase subunit alpha | - |
| VAPA_RS33075 () | 1266308..1267411 | + | 1104 | WP_021004616.1 | carbon-nitrogen hydrolase family protein | - |
| VAPA_RS33080 () | 1267330..1268166 | - | 837 | WP_021004617.1 | alpha/beta hydrolase | - |
| VAPA_RS33085 () | 1268167..1268871 | - | 705 | WP_021004618.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| VAPA_RS33090 () | 1268920..1269921 | - | 1002 | WP_021004619.1 | Zinc-type alcohol dehydrogenase-like protein | VF |
| VAPA_RS33095 () | 1270003..1270602 | - | 600 | WP_021004620.1 | TetR/AcrR family transcriptional regulator | - |
| VAPA_RS33100 () | 1270672..1271163 | + | 492 | WP_021004621.1 | nucleoside deaminase | - |
| VAPA_RS33105 () | 1271176..1272156 | - | 981 | WP_021004622.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| VAPA_RS33110 () | 1272307..1273104 | + | 798 | WP_041946942.1 | thioredoxin family protein | - |
| VAPA_RS33115 () | 1273139..1273747 | - | 609 | WP_021004624.1 | trimeric intracellular cation channel family protein | - |
| VAPA_RS33120 () | 1273758..1274402 | - | 645 | WP_021004625.1 | FMN-binding negative transcriptional regulator | - |
| VAPA_RS33125 () | 1274449..1275216 | - | 768 | WP_021004626.1 | hypothetical protein | - |
| VAPA_RS33130 () | 1275223..1275702 | - | 480 | WP_021004627.1 | AAC(3)-I family aminoglycoside N-acetyltransferase | - |
| VAPA_RS33135 () | 1275753..1277738 | - | 1986 | WP_021004628.1 | signal transduction histidine kinase | - |
| VAPA_RS33140 () | 1278009..1278917 | - | 909 | WP_021004629.1 | LysR family transcriptional regulator | - |
| VAPA_RS33145 () | 1279103..1280155 | + | 1053 | WP_021004630.1 | ABC transporter substrate-binding protein | - |
| VAPA_RS33150 () | 1280162..1281229 | + | 1068 | WP_021004631.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| VAPA_RS33155 () | 1281222..1282100 | + | 879 | WP_021004632.1 | ABC transporter permease | - |
| VAPA_RS33160 () | 1282117..1282911 | + | 795 | WP_021004633.1 | ABC transporter permease | - |
| VAPA_RS33165 () | 1282972..1284108 | + | 1137 | WP_021004634.1 | FAD-binding oxidoreductase | - |
| VAPA_RS33170 () | 1284098..1284463 | + | 366 | WP_021004635.1 | (2Fe-2S)-binding protein | - |
| VAPA_RS33175 () | 1284453..1285841 | + | 1389 | WP_021004636.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| VAPA_RS33180 () | 1285838..1286995 | + | 1158 | WP_021004637.1 | FAD-binding oxidoreductase | - |
| VAPA_RS33185 () | 1286992..1287345 | + | 354 | WP_021004638.1 | RidA family protein | - |
| VAPA_RS33190 () | 1287489..1288241 | + | 753 | WP_021004639.1 | alpha/beta hydrolase | - |
| VAPA_RS33195 () | 1288234..1289271 | - | 1038 | WP_021004640.1 | RNA methyltransferase | - |
| VAPA_RS33200 () | 1289310..1290770 | - | 1461 | WP_021004641.1 | GGDEF domain-containing protein | - |
| VAPA_RS33205 () | 1290833..1291192 | - | 360 | WP_041946744.1 | hypothetical protein | - |
| VAPA_RS33210 () | 1291315..1291848 | - | 534 | WP_021004643.1 | 2'-5' RNA ligase family protein | - |
| VAPA_RS33215 () | 1291951..1292352 | - | 402 | WP_021004644.1 | GreA/GreB family elongation factor | - |
| VAPA_RS34735 () | 1292607..1292789 | - | 183 | WP_155248161.1 | hypothetical protein | - |
| VAPA_RS33220 () | 1292799..1293611 | + | 813 | WP_021004645.1 | methyltransferase domain-containing protein | - |
| VAPA_RS33225 () | 1293680..1294081 | - | 402 | WP_021004646.1 | aspartate 1-decarboxylase | - |
| VAPA_RS33230 () | 1294733..1295059 | + | 327 | WP_021004647.1 | helix-turn-helix transcriptional regulator | - |
| VAPA_RS33235 () | 1295046..1296416 | + | 1371 | WP_021004648.1 | HipA domain-containing protein | - |
| VAPA_RS33240 () | 1296413..1297828 | - | 1416 | WP_021004649.1 | IS701 family transposase ISCARN42 | Transposase |
| VAPA_RS34320 () | 1297908..1298435 | + | 528 | WP_021004650.1 | DUF1232 domain-containing protein | - |
| VAPA_RS33245 () | 1298335..1299906 | - | 1572 | WP_196232596.1 | Phosphatidylglycerophosphatase B | VF |
| VAPA_RS34990 () | 1299813..1300337 | - | 525 | WP_051255459.1 | hypothetical protein | - |
| VAPA_RS33250 () | 1300457..1301608 | + | 1152 | Protein_1254 | IS5 family transposase ISCARN14 | Transposase |
| VAPA_RS33260 () | 1302614..1302862 | - | 249 | WP_021004653.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| VAPA_RS33265 () | 1302904..1303173 | - | 270 | WP_021004654.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VAPA_RS33270 () | 1304007..1304951 | + | 945 | WP_041946745.1 | DUF1738 domain-containing protein | - |
| VAPA_RS33275 () | 1305343..1305723 | + | 381 | WP_021004656.1 | LysR family transcriptional regulator | - |
| VAPA_RS33280 () | 1306007..1306327 | - | 321 | WP_051255477.1 | hypothetical protein | - |
| VAPA_RS34330 () | 1306736..1307290 | + | 555 | WP_196232597.1 | IS21 family transposase ISCARN95 | Transposase |
| VAPA_RS33285 () | 1307180..1307818 | - | 639 | WP_021004659.1 | hypothetical protein | - |
| VAPA_RS33290 () | 1307818..1308177 | - | 360 | WP_021004660.1 | hypothetical protein | - |
| VAPA_RS33295 () | 1308417..1308695 | + | 279 | WP_041946746.1 | helix-turn-helix domain-containing protein | - |
| VAPA_RS33300 () | 1308685..1309917 | + | 1233 | WP_021004662.1 | hypothetical protein | VF |
| VAPA_RS33305 () | 1310052..1310249 | + | 198 | WP_021004663.1 | hypothetical protein | - |
| VAPA_RS33310 () | 1310268..1311371 | - | 1104 | WP_021004664.1 | J domain-containing protein | - |
| VAPA_RS33315 () | 1311665..1312261 | + | 597 | WP_021004665.1 | chorismate mutase | - |
| VAPA_RS33320 () | 1312408..1312692 | + | 285 | WP_021004666.1 | DUF1778 domain-containing protein | - |
| VAPA_RS34335 () | 1312700..1313224 | + | 525 | WP_021004667.1 | integrase core domain-containing protein | - |
| VAPA_RS33325 () | 1313370..1314056 | + | 687 | WP_021004668.1 | hypothetical protein | - |
| VAPA_RS33330 () | 1314040..1314783 | + | 744 | WP_021004669.1 | Fic family protein | - |
| VAPA_RS33340 () | 1315096..1315818 | - | 723 | WP_155248179.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| VAPA_RS33345 () | 1315851..1316438 | - | 588 | WP_021004672.1 | hypothetical protein | - |
| VAPA_RS33350 () | 1316452..1317132 | - | 681 | WP_021004673.1 | ABC transporter permease subunit | - |
| VAPA_RS33355 () | 1317137..1317808 | - | 672 | WP_021004674.1 | ABC transporter permease subunit | - |
| VAPA_RS33360 () | 1317824..1318537 | - | 714 | WP_051255461.1 | ABC transporter substrate-binding protein | - |
| VAPA_RS34340 () | 1319391..1319756 | - | 366 | WP_080667000.1 | helix-turn-helix domain-containing protein | - |
| VAPA_RS33365 () | 1319928..1320491 | + | 564 | WP_041946949.1 | XRE family transcriptional regulator | - |
| VAPA_RS34740 () | 1320424..1320897 | + | 474 | WP_155248163.1 | metallophosphoesterase | - |
| VAPA_RS33375 () | 1321403..1322254 | - | 852 | WP_155248164.1 | hypothetical protein | - |
| VAPA_RS34745 () | 1322382..1322675 | + | 294 | WP_155248165.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| VAPA_RS33380 () | 1322558..1322806 | + | 249 | Protein_1283 | transcriptional regulator | - |
| VAPA_RS34750 () | 1323103..1323267 | - | 165 | Protein_1284 | IS21 family transposase ISCARN17 | Transposase |
| VAPA_RS34755 () | 1323324..1323526 | - | 203 | Protein_1285 | IS5 family transposase ISThsp21 | Transposase |
| VAPA_RS34760 () | 1323527..1323868 | - | 342 | Protein_1286 | IS5 family transposase ISThsp21 | Transposase |
| VAPA_RS34355 () | 1324122..1324442 | - | 321 | WP_021004681.1 | helix-turn-helix domain-containing protein | - |
| VAPA_RS33395 () | 1324669..1325232 | + | 564 | WP_196232609.1 | XRE family transcriptional regulator | - |
| VAPA_RS33400 () | 1325712..1326875 | - | 1164 | WP_021004683.1 | DUF1016 family protein | - |
| VAPA_RS33410 () | 1327864..1329425 | + | 1562 | WP_155248141.1 | IS3 family transposase ISAzo10 | Transposase |
| VAPA_RS33420 () | 1330001..1331098 | + | 1098 | WP_021004685.1 | hypothetical protein | - |
| VAPA_RS33425 () | 1331098..1332000 | + | 903 | WP_021004686.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| VAPA_RS34765 () | 1332010..1332171 | + | 162 | WP_155248166.1 | hypothetical protein | - |
| VAPA_RS33430 () | 1332168..1334519 | + | 2352 | WP_021004687.1 | DEAD/DEAH box helicase family protein | - |
| VAPA_RS33435 () | 1334734..1335252 | - | 519 | WP_021004688.1 | hypothetical protein | - |
| VAPA_RS34360 () | 1335264..1335617 | - | 354 | WP_021004689.1 | helix-turn-helix domain-containing protein | - |
| VAPA_RS33440 () | 1335843..1336415 | + | 573 | WP_041946954.1 | XRE family transcriptional regulator | - |
| VAPA_RS34995 () | 1337220..1337516 | + | 297 | WP_196232610.1 | hypothetical protein | - |
| VAPA_RS33450 () | 1337509..1338615 | + | 1107 | WP_021004692.1 | relaxase/mobilization nuclease domain-containing protein | - |
| VAPA_RS33455 () | 1338687..1339403 | - | 717 | WP_021004693.1 | TraX-like protein | - |
| VAPA_RS33460 () | 1339873..1341075 | - | 1203 | WP_021004695.1 | hypothetical protein | - |
| VAPA_RS33465 () | 1341143..1343098 | - | 1956 | WP_021004696.1 | Conjugal transfer protein TraG | VF |
| VAPA_RS33470 () | 1343064..1344062 | - | 999 | WP_196232611.1 | Type IV secretion system protein VirB11 | VF |
| VAPA_RS33475 () | 1344181..1345518 | - | 1338 | WP_021004698.1 | Type IV secretion system protein virB10 | VF |
| VAPA_RS33480 () | 1345515..1346357 | - | 843 | WP_021004699.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| VAPA_RS33485 () | 1346354..1347076 | - | 723 | WP_021004700.1 | Type IV secretion system protein virB8 | VF |
| VAPA_RS33490 () | 1347231..1348280 | - | 1050 | WP_021004701.1 | type IV secretion system protein | - |
| VAPA_RS33495 () | 1348516..1349250 | - | 735 | WP_021004702.1 | type IV secretion system protein | - |
| VAPA_RS33500 () | 1349243..1351750 | - | 2508 | WP_021004703.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| VAPA_RS33505 () | 1351765..1352133 | - | 369 | WP_021004704.1 | type IV secretion system protein VirB3 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|